genome.fa.s18.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  32  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13178254--13178346	47	2.0	47	84	14	122	77	0	21	1	0.83
13178263--13178345	20	4.0	20	78	7	78	78	0	20	1	0.82
13178564--13178602	20	2.0	20	89	0	60	17	46	28	7	1.76
13178688--13178726	13	3.0	13	80	0	51	84	10	5	0	0.76
13178688--13178728	21	2.0	21	85	0	55	85	9	4	0	0.73
13179034--13179077	18	2.4	18	76	0	52	31	11	9	47	1.71
13179334--13179577	17	13.3	18	71	15	135	34	14	8	42	1.76
13179368--13179519	57	2.7	55	84	7	189	33	13	8	44	1.74
13179455--13179559	39	2.7	38	80	2	120	37	13	6	42	1.70
13179364--13179580	95	2.3	95	79	10	216	35	14	7	42	1.74
13179423--13179577	38	4.1	38	75	7	140	36	14	7	41	1.74
13179642--13179683	20	2.1	20	86	8	59	50	7	7	35	1.57
13191340--13191400	8	7.6	8	90	0	68	13	13	22	50	1.75
13191344--13191382	4	9.8	4	94	0	69	2	20	25	51	1.60
13191338--13191388	12	4.2	12	89	0	66	9	15	23	50	1.73
13198051--13198092	2	21.0	2	100	0	84	50	50	0	0	1.00
13199579--13199608	13	2.3	13	94	0	51	70	0	0	30	0.88
13203140--13203180	21	1.9	22	85	5	57	63	4	2	29	1.28
13209723--13209752	2	15.0	2	100	0	60	50	0	50	0	1.00
13210237--13210279	18	2.2	20	88	8	63	58	0	0	41	0.98
13215968--13216019	26	2.1	27	82	13	67	46	0	1	51	1.12
13222407--13222448	2	21.0	2	100	0	84	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13224460--13224528	27	2.6	27	81	2	86	18	23	21	36	1.95
13234020--13234075	21	2.7	22	81	10	64	35	0	1	62	1.06
13234042--13234087	23	2.0	23	87	8	67	41	0	0	58	0.98
13234431--13234513	42	2.0	42	95	4	150	48	12	9	30	1.72
13235121--13235456	126	2.7	124	89	2	494	29	17	23	29	1.97
13236121--13236174	11	4.8	12	86	6	51	46	1	27	24	1.63
13238620--13238681	21	2.9	21	80	4	70	33	1	0	64	1.03
13239386--13239445	28	2.2	28	85	8	79	46	0	1	51	1.10
13244995--13245046	16	3.2	16	91	0	77	30	0	34	34	1.58
13245282--13245316	18	2.0	17	88	5	52	54	0	0	45	0.99
13245385--13245422	16	2.4	17	82	13	53	55	0	0	44	0.99
13245260--13245676	120	3.5	120	93	2	705	49	4	2	43	1.36
13245381--13245432	15	3.6	15	80	12	56	53	0	0	46	1.00
13253540--13253573	14	2.5	14	85	4	52	76	0	23	0	0.79
13254828--13254882	27	2.0	29	82	13	71	50	10	1	36	1.48
13257009--13257046	19	2.1	18	85	9	51	2	68	7	21	1.28
13260571--13260623	13	4.1	13	76	9	54	43	20	0	35	1.52
13260719--13260786	33	2.1	33	97	0	127	25	11	23	39	1.88
13260913--13260961	20	2.4	22	73	16	59	40	0	6	53	1.26
13263169--13263395	50	4.6	50	78	9	180	28	22	26	21	1.99
13263169--13263395	100	2.3	99	80	8	246	28	22	26	21	1.99
13264673--13264739	9	7.4	9	86	0	98	40	22	11	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13264673--13264739	27	2.5	27	92	0	116	40	22	11	25	1.88
13264842--13264885	18	2.4	18	88	0	61	13	2	43	40	1.57
13265423--13265454	15	2.2	15	94	5	57	15	6	15	62	1.51
13267383--13267442	30	2.0	30	93	0	102	26	3	13	56	1.52
13269933--13269988	17	3.4	16	81	18	62	33	1	3	60	1.24
13269952--13269980	8	3.6	8	100	0	58	34	0	0	65	0.93
13269889--13269979	42	2.1	43	78	6	96	27	3	3	65	1.23
13269942--13269987	16	2.8	15	84	15	56	34	2	2	60	1.21
13270553--13270620	16	4.2	16	90	0	109	26	2	33	36	1.72
13270856--13270890	18	2.0	17	88	5	52	54	0	0	45	0.99
13270750--13271058	157	2.0	156	96	0	573	44	2	4	47	1.39
13270993--13271034	15	2.7	16	82	14	52	52	2	0	45	1.13
13271002--13271040	15	2.7	15	88	7	55	53	0	0	46	1.00
13271111--13271159	13	3.7	13	83	8	55	53	2	0	44	1.12
13271228--13271399	15	11.6	15	65	21	60	50	4	1	43	1.33
13270996--13271506	120	4.3	120	94	3	892	49	5	2	42	1.38
13271369--13271416	18	2.8	18	74	22	50	52	2	0	45	1.12
13272789--13272881	39	2.5	37	80	7	98	27	29	22	20	1.98
13273236--13273283	3	16.0	3	82	0	60	58	6	0	35	1.23
13273237--13273285	18	2.7	18	93	0	80	55	8	0	36	1.30
13273236--13273283	12	4.0	12	91	0	69	58	6	0	35	1.23
13273990--13274029	20	2.0	20	85	9	55	2	15	5	77	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13274160--13274227	31	2.3	28	78	9	73	41	2	1	54	1.24
13274206--13274244	21	1.9	20	84	5	51	46	2	0	51	1.14
13287422--13287456	12	2.9	12	86	0	52	40	11	5	42	1.65
13313909--13313960	24	2.2	24	85	0	68	40	1	5	51	1.37
13325093--13325127	18	1.9	18	88	0	52	40	2	0	57	1.14
13325090--13325132	18	2.5	17	81	7	50	41	2	0	55	1.12
13329605--13329644	6	6.7	6	91	0	53	50	50	0	0	1.00
13332509--13332538	14	2.1	15	93	6	53	80	0	20	0	0.72
13335126--13335169	21	2.1	21	95	0	79	45	31	6	15	1.73
13335900--13335932	12	2.8	12	95	0	57	48	0	21	30	1.50
13338261--13338306	14	3.4	14	84	3	58	56	10	2	30	1.46
13341238--13341385	37	4.0	37	94	0	251	38	13	20	27	1.90
13347699--13347733	18	2.0	17	88	5	52	82	0	0	17	0.66
13347709--13347734	13	2.0	13	100	0	52	84	0	0	15	0.62
13348906--13349053	37	4.0	37	94	0	251	38	13	20	27	1.90
13354455--13354489	18	1.9	18	88	0	52	40	2	0	57	1.14
13354398--13354507	53	2.1	53	86	6	152	32	2	7	57	1.40
13356209--13356260	24	2.2	24	89	3	79	42	7	3	46	1.51
13356513--13356556	21	2.1	21	95	0	79	45	31	6	15	1.73
13356727--13356770	21	2.1	21	95	0	79	45	31	6	15	1.73
13356390--13357412	214	4.8	214	99	0	2037	40	17	13	28	1.88
13356941--13356984	21	2.1	21	95	0	79	45	31	6	15	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13357155--13357198	21	2.1	21	95	0	79	45	31	6	15	1.73
13357369--13357434	21	3.1	21	91	4	105	43	31	7	16	1.76
13357369--13357434	22	3.0	22	93	2	107	43	31	7	16	1.76
13359175--13359224	18	2.6	19	84	6	57	34	4	2	60	1.27
13368801--13368857	16	3.4	16	73	17	53	57	7	1	33	1.36
13377731--13377778	7	6.6	7	81	9	51	54	0	4	41	1.20
13377713--13377775	31	2.1	30	85	8	83	53	0	4	41	1.22
13377716--13377778	16	3.9	16	74	14	58	58	0	3	38	1.14
13381676--13382491	153	5.4	154	87	6	1121	30	9	7	52	1.63
13381676--13382491	304	2.7	307	89	6	1232	30	9	7	52	1.63
13382708--13382742	16	2.1	17	89	5	54	14	0	8	77	0.99
13388362--13388410	24	2.0	24	100	0	98	24	20	12	42	1.86
13395763--13395878	60	2.0	57	90	8	182	21	10	15	52	1.72
13397746--13397807	31	2.0	31	90	0	97	25	20	9	43	1.83
13398283--13398329	22	2.1	23	84	11	62	65	2	6	25	1.27
13412151--13412213	23	2.7	23	80	9	58	61	3	1	33	1.21
13412167--13412213	22	2.1	23	84	4	60	61	4	2	31	1.27
13412996--13413021	3	8.7	3	100	0	52	69	0	0	30	0.89
13413635--13413689	22	2.5	22	80	19	69	43	1	30	23	1.64
13413635--13413688	11	4.8	12	80	15	62	42	1	31	24	1.65
13414668--13414723	19	2.8	20	78	8	60	53	1	3	41	1.29
13423174--13423213	9	4.3	9	84	6	53	17	5	0	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13424671--13424737	34	1.9	35	87	3	100	35	5	8	49	1.59
13428319--13428501	51	3.6	51	83	6	187	28	25	16	29	1.97
13430695--13430724	14	2.1	14	93	0	51	36	10	43	10	1.72
13430735--13430801	33	2.0	33	88	0	98	40	2	41	14	1.62
13433733--13433792	31	1.9	31	93	0	102	50	13	8	28	1.70
13434129--13434162	6	5.7	6	96	0	59	50	0	11	38	1.39
13442117--13442154	19	2.0	19	90	10	60	39	0	0	60	0.97
13442123--13442174	27	1.9	27	84	7	70	46	1	0	51	1.12
13443589--13443624	16	2.1	16	90	10	54	27	0	8	63	1.23
13443663--13443708	23	2.0	23	87	8	67	43	4	2	50	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199