genome.fa.s18.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  179  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57249399--57249474	23	3.3	23	90	0	125	21	21	27	30	1.98
57250924--57250960	17	2.1	17	90	5	56	54	0	0	45	1.00
57254517--57254583	30	2.2	30	91	2	107	22	4	11	61	1.48
57255635--57255691	20	2.9	19	71	5	60	52	0	3	43	1.18
57256671--57256695	13	1.9	13	100	0	50	64	8	0	28	1.22
57259158--57259216	3	19.3	3	78	16	59	61	3	1	33	1.23
57259161--57259204	16	2.8	15	89	6	61	61	2	0	36	1.09
57259158--57259204	11	4.6	10	77	12	51	61	2	0	36	1.08
57259157--57259204	19	2.5	19	86	6	62	60	2	0	37	1.09
57259204--57259241	20	1.9	20	84	10	51	57	7	5	28	1.49
57260308--57260340	13	2.4	14	90	5	50	72	0	9	18	1.10
57261064--57261122	3	19.7	3	89	0	91	32	1	3	62	1.21
57261482--57261574	39	2.4	39	80	7	102	21	21	29	27	1.99
57265252--57265305	29	1.9	27	88	7	81	61	1	5	31	1.30
57281312--57281341	15	2.1	14	93	6	51	50	0	0	50	1.00
57284922--57284985	31	2.0	33	85	11	89	54	3	0	42	1.16
57285184--57285255	34	2.1	34	89	0	108	8	19	51	20	1.72
57285186--57285255	17	4.2	18	69	18	53	8	20	51	20	1.73
57288234--57288297	3	21.3	3	76	6	58	29	1	6	62	1.29
57288342--57288381	14	2.9	14	88	7	55	32	0	2	65	1.06
57288876--57288924	18	2.7	19	81	9	57	18	6	4	71	1.23
57296341--57296370	15	2.1	14	93	6	51	50	0	3	46	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57298841--57298926	37	2.3	37	95	0	154	23	16	15	45	1.85
57300980--57301045	33	2.0	33	82	11	82	51	3	0	45	1.16
57305184--57305215	16	2.0	16	100	0	64	37	31	0	31	1.58
57311416--57311470	23	2.4	23	87	6	76	43	10	12	32	1.78
57311475--57311526	23	2.3	23	90	6	79	42	9	13	34	1.77
57311411--57311526	59	2.0	59	94	0	205	45	9	13	31	1.76
57315333--57315398	33	2.0	33	82	11	82	53	1	0	45	1.09
57317593--57317695	53	1.9	53	98	0	197	20	13	22	43	1.86
57318723--57318797	38	2.0	37	82	12	91	53	0	0	46	1.00
57318723--57318797	37	2.0	38	82	12	93	53	0	0	46	1.00
57330579--57330624	17	2.6	18	82	3	58	60	2	2	34	1.21
57330617--57330651	16	2.1	17	89	5	54	68	0	8	22	1.16
57330617--57330650	17	1.9	17	88	5	50	70	0	8	20	1.13
57335828--57335870	16	2.8	15	80	13	52	58	13	23	4	1.55
57338568--57338623	28	2.0	28	100	0	112	39	28	10	21	1.87
57340421--57340458	15	2.5	15	84	12	51	57	13	26	2	1.49
57340907--57340944	19	2.0	19	100	0	76	42	15	15	26	1.87
57350721--57350773	26	2.0	28	92	7	92	16	22	11	49	1.78
57352576--57352666	45	2.0	45	95	0	164	39	10	30	18	1.85
57352568--57352644	23	3.4	22	67	25	54	42	10	27	19	1.83
57355958--57356021	30	2.1	31	94	2	112	39	6	28	26	1.80
57355956--57356006	15	3.3	16	72	10	61	43	5	25	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57360581--57360674	30	3.1	30	96	1	170	40	6	26	26	1.80
57360579--57360659	15	5.3	16	71	11	80	43	6	24	25	1.77
57361950--57362043	30	3.1	30	96	1	170	40	6	26	26	1.80
57361948--57362028	15	5.3	16	71	11	80	43	6	24	25	1.77
57369433--57369516	40	2.0	40	88	4	123	44	8	9	38	1.67
57372534--57372571	20	1.9	20	88	0	58	50	13	7	28	1.69
57372520--57372586	34	1.9	35	87	3	100	46	14	7	31	1.73
57372555--57372594	14	2.9	14	84	0	53	42	17	7	32	1.77
57373226--57373309	40	2.1	40	86	8	118	47	0	2	50	1.14
57373722--57373764	18	2.5	17	81	7	50	46	2	0	51	1.13
57373742--57373789	24	2.0	24	84	8	62	50	4	0	45	1.21
57381932--57381985	26	2.0	27	89	3	83	18	22	11	48	1.79
57389090--57389123	16	2.1	16	100	0	68	38	11	38	11	1.79
57391361--57391399	18	2.2	17	82	8	51	43	0	2	53	1.14
57393223--57393256	13	2.6	14	90	9	54	82	0	17	0	0.67
57394063--57394098	8	4.5	8	89	10	56	75	0	11	13	1.06
57394064--57394098	15	2.2	16	95	5	63	74	0	11	14	1.08
57394637--57394672	16	2.2	16	100	0	72	38	16	19	25	1.92
57395240--57395519	46	6.1	46	93	0	445	26	16	27	29	1.97
57395501--57396042	132	4.1	132	94	1	937	31	18	23	26	1.97
57395704--57396039	44	7.7	44	65	16	151	30	19	24	25	1.98
57397634--57397659	13	2.0	13	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57397696--57397762	29	2.3	29	100	0	134	22	2	10	64	1.39
57397704--57397752	16	3.2	16	68	26	52	26	4	8	61	1.42
57397905--57397988	17	4.7	17	75	16	71	23	0	7	69	1.13
57397948--57397988	11	3.6	11	84	15	57	26	0	0	73	0.84
57397949--57397988	3	14.0	3	84	10	57	27	0	0	72	0.85
57397948--57397988	14	2.9	14	86	10	57	26	0	0	73	0.84
57401970--57402002	16	2.1	16	94	0	57	33	12	6	48	1.65
57403295--57403337	23	1.9	23	90	4	70	65	2	4	27	1.25
57405469--57405604	43	3.2	43	78	13	147	29	18	20	31	1.96
57405469--57405679	86	2.4	85	79	13	209	30	19	18	32	1.95
57405833--57405866	15	2.3	15	94	0	59	38	11	2	47	1.55
57405888--57405915	12	2.3	12	100	0	56	35	10	7	46	1.66
57406708--57406907	7	28.3	7	73	6	143	48	33	0	18	1.52
57406691--57406833	14	10.1	14	69	16	55	46	38	0	13	1.49
57407268--57407363	40	2.4	40	82	6	115	27	22	19	30	1.98
57407197--57407477	154	1.8	154	87	1	420	28	21	18	30	1.97
57408298--57408468	90	1.9	90	85	4	238	39	17	18	24	1.92
57408290--57408485	90	2.2	90	77	5	218	38	16	19	25	1.92
57422299--57422337	19	2.0	20	85	10	53	25	0	17	56	1.41
57426343--57426396	28	1.9	28	85	7	74	38	1	1	57	1.20
57426526--57426573	16	2.9	15	79	14	51	72	2	2	22	1.05
57426899--57426939	9	4.6	9	90	0	64	29	21	4	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57430417--57430513	44	2.2	44	92	0	158	50	11	22	15	1.76
57430417--57430534	44	2.7	44	85	5	141	51	11	22	14	1.74
57433126--57433170	24	1.9	23	86	4	63	51	0	2	46	1.13
57440417--57440468	23	2.2	24	77	16	56	42	0	13	44	1.44
57442624--57442657	15	2.3	15	89	0	50	17	14	8	58	1.61
57444560--57444680	62	2.0	62	98	0	233	42	21	4	32	1.72
57445954--57445986	17	1.9	17	88	11	50	87	9	3	0	0.63
57446437--57446508	7	9.9	7	74	14	56	79	2	16	1	0.93
57446447--57446509	16	3.8	16	76	20	58	77	1	19	1	0.93
57446439--57446508	22	3.2	21	81	4	77	80	2	15	1	0.91
57447451--57447549	44	2.2	45	82	3	121	29	18	24	28	1.98
57447603--57448416	100	8.2	100	82	5	977	30	21	21	26	1.99
57447602--57448403	200	4.0	200	91	0	1250	30	21	21	26	1.99
57448422--57449088	84	7.9	84	91	3	1031	33	22	21	22	1.97
57448425--57449212	84	9.4	82	88	5	898	34	22	20	22	1.97
57448425--57449220	168	4.7	168	87	7	993	34	22	20	22	1.97
57448422--57449212	252	3.1	252	87	7	1067	34	22	20	22	1.97
57450854--57450923	22	3.0	22	73	17	61	35	12	0	51	1.40
57451311--57451344	15	2.3	15	89	0	50	17	14	8	58	1.61
57460913--57460946	17	2.0	17	94	0	59	44	50	0	5	1.26
57465551--57465584	17	2.0	17	94	0	59	44	50	0	5	1.26
57477162--57477194	15	2.2	15	100	0	66	0	36	6	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57479521--57479636	58	2.0	58	98	0	223	30	17	21	31	1.96
57485074--57485150	29	2.6	29	83	4	91	48	14	12	24	1.79
57486225--57486256	9	3.4	9	95	4	55	34	12	0	53	1.39
57486945--57487023	42	1.9	42	82	7	99	18	24	18	37	1.94
57491116--57491205	44	2.0	44	89	4	137	12	23	11	53	1.70
57499386--57499419	16	2.1	16	88	0	50	50	14	17	17	1.79
57501980--57502020	21	2.0	21	90	0	64	19	29	21	29	1.98
57511789--57511833	15	3.0	15	90	0	54	46	2	4	46	1.35
57512093--57512171	40	2.0	40	84	0	104	18	22	17	40	1.91
57515328--57515354	7	3.9	7	100	0	54	25	0	0	74	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199