genome.fa.s18.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  92  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31734954--31735257	103	3.0	97	78	14	337	28	0	15	54	1.48
31737334--31737413	33	2.4	33	81	6	99	18	40	13	27	1.89
31737659--31737951	76	3.9	76	88	2	421	26	7	10	55	1.59
31737659--31737951	153	1.9	150	88	3	437	26	7	10	55	1.59
31741050--31741121	27	2.7	27	86	0	99	26	22	29	22	1.99
31743388--31743430	22	1.9	23	85	4	61	48	0	0	51	1.00
31745681--31745802	60	2.0	60	96	0	226	29	20	17	32	1.95
31748520--31748563	16	2.8	16	82	3	54	54	2	4	38	1.33
31763959--31763999	20	2.0	21	90	4	66	43	0	2	53	1.13
31766045--31766099	26	2.1	26	100	0	110	41	25	14	18	1.88
31772628--31772671	19	2.1	20	84	16	54	61	4	0	34	1.16
31772759--31772810	25	2.1	25	100	0	104	61	11	7	19	1.53
31773144--31773192	26	1.9	25	95	4	89	36	4	0	59	1.17
31773160--31773211	22	2.3	23	78	12	63	28	3	0	67	1.08
31774608--31774653	5	9.2	5	77	17	51	21	0	2	76	0.90
31774616--31774653	20	2.0	18	90	10	58	21	0	2	76	0.91
31774601--31774655	22	2.5	23	74	17	62	27	0	1	70	0.97
31775107--31775140	14	2.4	14	85	0	50	67	5	2	23	1.26
31775543--31775587	22	2.0	22	84	16	58	53	8	6	31	1.58
31776065--31776135	25	3.0	22	74	22	65	74	2	18	4	1.10
31776064--31776121	16	3.5	16	72	9	53	74	1	20	3	1.06
31776682--31776740	29	2.0	29	86	0	82	33	30	8	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31780360--31780409	25	2.0	25	100	0	100	56	0	12	32	1.36
31782307--31782393	40	2.2	40	87	6	124	12	24	17	45	1.82
31786354--31786439	5	17.2	5	100	0	172	39	20	0	39	1.53
31787185--31787251	28	2.4	28	90	2	100	29	22	23	23	1.99
31787165--31787258	28	3.0	33	73	19	94	26	22	25	25	2.00
31787594--31787740	27	5.5	27	80	10	160	23	19	19	37	1.94
31788382--31788463	42	2.1	37	82	13	92	47	8	37	6	1.59
31790356--31790625	47	5.4	47	71	14	200	39	16	7	37	1.76
31790307--31790630	157	2.1	157	94	0	569	38	16	7	37	1.77
31792716--31792765	5	10.0	5	100	0	100	80	0	0	20	0.72
31794168--31794202	18	1.9	18	88	0	52	25	5	0	68	1.11
31797411--31797443	17	1.9	17	100	0	66	12	15	18	54	1.71
31798164--31798262	43	2.3	43	84	3	137	26	15	18	40	1.89
31798962--31799158	41	4.8	41	89	2	270	15	21	30	31	1.94
31799597--31799644	13	3.5	14	77	13	55	16	2	47	33	1.58
31799701--31799732	7	4.6	7	92	0	55	12	0	53	34	1.39
31799701--31799740	21	1.9	21	84	0	53	17	0	50	32	1.47
31799884--31799926	15	3.0	14	83	6	50	30	0	37	32	1.58
31800345--31800398	27	2.0	27	100	0	108	55	3	18	22	1.58
31804626--31804720	43	2.2	43	86	0	127	34	10	8	46	1.69
31804980--31805168	43	4.4	43	78	7	177	25	16	31	25	1.97
31805359--31805476	47	2.4	50	78	12	136	46	3	2	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31805556--31805585	15	1.9	16	93	6	53	43	0	6	50	1.28
31805529--31805836	61	5.1	61	67	12	249	43	2	5	48	1.40
31805577--31805611	18	2.0	17	88	5	52	45	0	0	54	0.99
31805457--31805865	120	3.4	120	96	0	739	43	2	4	49	1.36
31805817--31805851	18	2.0	18	88	5	54	42	0	0	57	0.99
31805836--31805891	25	2.2	25	82	14	71	42	0	3	53	1.18
31806008--31806104	45	2.2	45	88	5	144	35	28	4	31	1.76
31806084--31806120	16	2.3	16	95	0	65	21	32	5	40	1.76
31809513--31809598	30	3.0	28	72	9	84	30	23	11	34	1.90
31811447--31811504	20	2.9	21	85	10	68	41	1	1	55	1.20
31816544--31816794	112	2.3	107	85	6	335	37	12	14	35	1.84
31816541--31816766	107	2.1	104	82	11	287	38	12	14	33	1.84
31816877--31817160	110	2.6	109	87	7	416	30	16	12	40	1.86
31816877--31817160	107	2.6	110	86	6	409	30	16	12	40	1.86
31816890--31817234	107	3.2	108	81	12	354	29	16	11	42	1.83
31817443--31817484	19	2.3	18	84	8	50	28	0	11	59	1.33
31818006--31818068	31	2.0	31	100	0	126	49	9	12	28	1.72
31818107--31818150	19	2.1	20	84	16	54	61	4	0	34	1.16
31818989--31819032	19	2.1	20	84	16	54	61	4	0	34	1.16
31820521--31820575	22	2.5	23	77	14	62	29	3	1	65	1.20
31821070--31821108	11	3.5	11	83	13	53	64	17	12	5	1.46
31829335--31829413	40	2.0	40	85	5	106	13	29	18	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31830764--31830801	16	2.5	15	83	8	51	68	0	0	31	0.90
31833407--31833499	5	18.6	5	100	0	186	39	19	0	40	1.52
31834253--31834318	28	2.4	28	82	7	73	31	21	22	24	1.98
31834421--31834527	26	4.1	26	82	0	124	35	20	22	21	1.96
31834657--31834762	27	3.9	27	81	7	99	24	17	21	35	1.95
31834680--31834780	54	1.9	52	89	4	157	22	19	20	36	1.95
31836207--31836236	5	6.0	5	100	0	60	80	0	0	20	0.72
31837917--31837954	19	2.0	20	89	5	60	39	0	2	57	1.12
31843479--31843564	30	3.0	28	72	9	84	30	23	11	34	1.90
31845414--31845471	20	2.9	21	85	10	68	41	1	1	55	1.20
31850483--31850705	114	2.1	104	85	10	288	39	13	14	33	1.84
31850481--31850708	108	2.1	108	87	8	325	38	12	14	34	1.84
31850816--31851103	112	2.6	111	86	7	424	30	17	12	40	1.86
31851386--31851427	19	2.3	18	84	8	50	28	0	11	59	1.33
31851950--31852012	31	2.0	31	100	0	126	49	9	12	28	1.72
31852051--31852094	19	2.1	20	84	16	54	61	4	0	34	1.16
31854497--31854534	20	1.9	20	84	10	51	50	5	5	39	1.48
31856099--31856130	3	10.7	3	93	0	55	31	3	0	65	1.08
31856083--31856144	12	5.9	10	74	22	56	29	3	3	64	1.25
31868781--31869382	44	13.9	43	69	13	272	30	18	21	29	1.97
31868868--31869251	175	2.2	170	87	2	552	30	18	21	28	1.97
31868781--31869382	46	13.8	45	70	11	269	30	18	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31869088--31869378	130	2.2	131	96	0	530	30	15	21	31	1.95
31870685--31870716	3	10.7	3	93	0	55	31	3	0	65	1.08
31870669--31870730	12	5.9	10	74	22	56	29	3	3	64	1.25
31872163--31872205	14	3.0	14	76	6	50	79	0	13	6	0.93
31872773--31872831	29	2.0	29	86	0	82	33	30	8	27	1.86
31873665--31873782	59	2.0	59	94	0	209	24	16	11	47	1.79
31878427--31878486	20	3.0	20	67	0	57	20	31	16	31	1.95
31878417--31878519	40	2.6	40	82	0	116	20	30	15	33	1.94
31879859--31879896	16	2.5	15	83	8	51	68	0	0	31	0.90
31880726--31880767	17	2.5	17	96	0	75	14	7	45	33	1.72
31880852--31880877	5	5.2	5	100	0	52	19	61	19	0	1.35
31882666--31882719	15	3.6	15	82	5	65	38	18	1	40	1.61
31882684--31882719	5	7.2	5	93	0	63	41	19	0	38	1.52
31894951--31895002	21	2.5	21	87	6	70	63	5	3	26	1.34
31896532--31896591	30	2.0	31	86	3	86	40	0	40	20	1.52
31896804--31896840	9	4.1	9	89	0	56	29	8	13	48	1.71
31897428--31897486	20	2.9	21	85	9	70	40	1	1	55	1.20
31898779--31898878	20	4.8	20	68	26	64	44	2	3	51	1.28
31898820--31898878	20	2.9	21	87	9	79	42	1	1	54	1.20
31903099--31903202	47	2.3	45	80	6	111	29	9	9	50	1.67
31903115--31903261	45	3.1	47	82	7	172	27	12	12	47	1.77
31903132--31903291	51	3.4	47	81	9	171	28	10	12	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31903426--31903458	15	2.1	16	88	11	50	42	0	0	57	0.98
31904350--31904401	16	3.2	16	94	0	86	40	1	32	25	1.67
31904387--31904475	44	2.0	46	88	4	137	29	4	28	38	1.76
31904653--31904928	102	2.7	102	96	0	516	50	4	1	43	1.33
31904804--31904847	22	2.0	23	86	4	63	61	2	0	36	1.09
31904903--31904943	21	2.0	21	95	0	73	53	9	2	34	1.47
31909858--31910054	25	7.9	25	93	1	317	20	25	19	33	1.97
31910054--31910105	22	2.4	22	83	6	70	19	17	19	44	1.87
31911312--31911415	47	2.1	50	84	7	142	21	13	30	34	1.92
31915437--31915508	35	2.1	35	97	0	135	41	19	12	26	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199