genome.fa.s18.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  96  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32690864--32690904	20	2.0	20	100	0	82	24	9	19	46	1.80
32701947--32702091	27	5.4	27	75	11	136	20	15	20	43	1.88
32701949--32702095	54	2.7	54	85	6	165	21	15	19	43	1.88
32702790--32702855	12	5.5	12	72	13	64	25	42	0	31	1.55
32702793--32702855	24	2.6	24	100	0	126	26	42	0	30	1.56
32710713--32710897	40	4.7	40	80	1	192	28	22	19	29	1.98
32710717--32710920	40	5.1	40	77	3	189	29	21	19	30	1.97
32710713--32710920	79	2.6	79	82	1	236	29	21	18	30	1.97
32715513--32715567	13	3.8	14	76	21	51	32	0	1	65	1.03
32724782--32724826	24	1.9	23	82	13	56	46	26	6	20	1.75
32725970--32726112	33	4.3	33	68	7	99	27	23	15	32	1.95
32725875--32726114	101	2.4	101	93	0	399	28	25	15	30	1.95
32734204--32734247	23	2.0	22	82	13	54	52	2	0	45	1.13
32739228--32739286	29	2.0	29	90	0	91	22	10	32	35	1.87
32740069--32740101	17	1.9	17	93	0	57	51	0	6	42	1.26
32750786--32750829	23	1.9	22	82	17	54	36	25	0	38	1.56
32750874--32750962	45	2.0	45	93	0	151	32	22	19	25	1.97
32750973--32751150	51	3.5	50	75	6	171	32	27	15	24	1.96
32751376--32751406	16	1.9	16	93	0	53	45	3	9	41	1.53
32760006--32760049	23	1.9	23	90	0	70	13	11	29	45	1.79
32776518--32776609	21	4.4	21	78	13	100	25	2	33	39	1.68
32776533--32776607	7	10.6	7	76	12	64	26	1	30	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32776938--32776974	18	2.1	18	100	0	74	32	21	5	40	1.76
32780038--32780090	24	2.2	24	89	0	79	33	5	9	50	1.58
32782175--32782244	29	2.4	29	78	4	79	18	0	37	44	1.50
32789883--32789976	42	2.2	42	84	0	116	25	30	24	19	1.98
32790476--32790537	31	2.0	31	96	0	115	33	29	4	32	1.78
32798058--32798109	27	1.9	27	92	0	86	32	30	19	17	1.95
32797982--32798182	102	2.0	102	92	0	339	33	27	18	20	1.96
32805157--32805190	3	11.3	3	100	0	68	32	0	0	67	0.91
32826089--32826145	29	2.0	29	89	0	87	40	0	5	54	1.23
32827162--32827186	2	12.5	2	100	0	50	52	0	0	48	1.00
32830779--32830989	112	1.9	112	95	0	386	30	20	9	39	1.85
32836337--32836402	27	2.4	28	87	2	98	42	0	3	54	1.15
32837024--32837066	20	2.2	20	100	0	86	18	41	9	30	1.82
32838159--32838202	22	2.0	22	100	0	88	36	13	22	27	1.92
32838397--32838428	17	1.9	16	93	6	55	37	9	0	53	1.34
32841312--32841350	13	3.2	13	85	7	55	53	0	0	46	1.00
32841312--32841376	24	2.7	23	79	9	60	53	0	1	44	1.09
32841718--32841784	22	2.9	23	68	17	57	44	0	2	52	1.16
32842204--32842258	17	3.4	17	79	16	55	40	0	1	58	1.09
32842218--32842261	16	2.7	16	89	10	63	45	0	0	54	0.99
32847780--32847815	2	18.0	2	100	0	72	50	50	0	0	1.00
32848811--32848893	42	2.0	42	100	0	166	31	16	20	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32849755--32849803	25	2.0	25	84	8	64	57	2	2	38	1.22
32849824--32849881	8	7.1	8	74	21	50	37	0	0	62	0.96
32849824--32849863	17	2.3	18	87	12	57	37	0	0	62	0.95
32849830--32849881	24	2.2	24	85	0	68	36	0	0	63	0.95
32853880--32854006	42	3.0	41	76	6	103	25	25	25	22	2.00
32856023--32856073	21	2.5	20	78	9	57	21	0	31	47	1.51
32857206--32857266	14	4.6	14	74	11	58	60	1	37	0	1.07
32863899--32863940	14	3.2	14	74	19	54	66	2	0	30	1.04
32865870--32865933	29	2.2	29	82	2	74	45	9	14	31	1.76
32865889--32865959	29	2.4	30	85	4	99	45	11	11	32	1.75
32869514--32869552	14	2.8	14	84	7	53	23	0	2	74	0.94
32870709--32870738	8	3.8	8	100	0	60	0	20	13	66	1.24
32885701--32885774	39	2.0	36	89	7	112	62	0	4	33	1.14
32886321--32886352	12	2.5	13	95	5	57	21	0	40	37	1.54
32885949--32886512	231	2.5	225	90	6	877	35	3	18	42	1.66
32886828--32886868	21	2.0	21	85	9	57	4	17	43	34	1.70
32887131--32887173	18	2.4	18	92	0	68	44	6	27	20	1.77
32889716--32889756	21	2.0	20	85	4	55	51	0	0	48	1.00
32889715--32889767	17	2.7	21	70	29	62	52	0	0	47	1.00
32889716--32889832	62	1.9	59	86	5	162	50	2	3	43	1.32
32889806--32889918	19	6.1	18	71	21	83	51	2	3	42	1.33
32899009--32899037	4	7.5	4	92	7	51	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32899341--32899398	19	2.7	22	84	10	68	36	8	17	37	1.80
32899367--32899412	21	2.1	22	84	8	58	36	4	15	43	1.66
32899354--32899412	22	2.7	23	79	7	61	37	5	16	40	1.71
32899508--32899587	40	2.0	40	95	0	142	61	3	21	13	1.48
32901902--32901996	47	2.0	47	100	0	190	45	12	16	25	1.83
32902578--32902635	21	2.7	21	83	5	71	62	1	6	29	1.31
32902852--32903102	50	5.1	49	79	9	260	22	23	19	33	1.97
32902825--32903101	49	5.6	48	77	6	252	25	23	19	31	1.98
32902825--32903101	99	2.8	97	79	6	281	25	23	19	31	1.98
32903603--32903734	48	2.8	48	80	5	133	34	21	21	22	1.97
32904228--32904451	48	4.6	48	82	4	254	25	22	19	32	1.97
32904213--32904451	97	2.5	96	83	2	275	24	22	20	33	1.97
32905371--32905726	100	3.6	99	85	4	416	25	1	15	58	1.46
32908286--32908337	26	2.0	26	96	0	95	28	34	23	13	1.92
32908150--32908416	104	2.6	104	94	1	455	30	30	20	18	1.97
32908744--32908807	30	2.2	29	81	10	76	29	28	6	35	1.82
32908751--32908807	30	1.9	30	85	3	80	29	24	7	38	1.82
32911448--32911483	18	2.0	18	94	0	63	22	25	16	36	1.94
32912048--32912090	11	4.1	10	81	18	52	74	4	0	20	1.00
32912292--32913122	107	7.6	107	82	9	912	58	14	1	25	1.45
32912907--32912964	22	2.4	25	72	27	61	70	8	0	20	1.13
32912077--32913122	439	2.4	426	83	8	1276	58	14	1	25	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32912087--32913122	220	4.7	219	84	7	1260	58	14	1	25	1.46
32913497--32914086	96	6.1	97	85	6	779	43	2	16	37	1.63
32913497--32914090	194	3.1	193	92	2	964	42	2	16	38	1.63
32914126--32914410	126	2.3	126	90	2	439	33	18	20	27	1.96
32914991--32915220	95	2.4	95	86	2	318	38	16	2	42	1.60
32915217--32915258	16	2.6	16	81	7	50	54	30	0	14	1.40
32918322--32918397	40	1.9	40	86	5	109	22	27	26	23	1.99
32934115--32934158	19	2.4	19	84	3	63	2	6	9	81	0.94
32934664--32934717	18	3.1	18	89	2	74	57	29	1	11	1.44
32934664--32934717	17	3.1	17	86	2	63	57	29	1	11	1.44
32940067--32940110	16	2.8	16	71	0	52	11	0	34	54	1.36
32940293--32940704	202	2.0	201	90	0	653	32	9	13	43	1.77
32942978--32943045	29	2.4	28	85	9	84	27	29	13	29	1.94
32943147--32943225	29	2.7	30	82	13	110	29	30	15	25	1.96
32942693--32943194	174	2.9	174	98	0	950	30	23	14	31	1.94
32951171--32951238	29	2.4	28	85	9	84	27	29	13	29	1.94
32951340--32951418	29	2.7	30	82	13	110	29	30	15	25	1.96
32950886--32951387	174	2.9	174	98	0	950	30	23	14	30	1.94
32959979--32960013	13	2.7	13	100	0	70	60	0	0	40	0.97
32961776--32961819	19	2.2	20	84	12	63	52	4	4	38	1.42
32961781--32961830	19	2.6	19	90	0	73	52	2	6	40	1.38
32963043--32963086	18	2.5	17	78	10	52	40	0	40	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32965418--32965448	16	1.9	16	93	0	53	48	6	9	35	1.62
32965427--32965470	22	2.0	23	81	4	54	61	2	2	34	1.21
32965539--32965616	3	25.3	3	74	17	63	60	2	3	33	1.28
32966995--32967590	114	5.2	114	86	2	822	24	21	26	27	1.99
32967522--32967599	41	1.9	41	86	0	111	20	19	28	32	1.97
32968154--32968186	14	2.3	15	94	5	59	30	0	33	36	1.58
32968347--32968380	7	4.9	7	92	0	50	20	0	50	29	1.49
32968341--32968380	21	1.9	21	89	0	62	22	0	47	30	1.52
32968341--32968380	14	2.9	14	80	0	53	22	0	47	30	1.52
32968359--32968625	90	3.0	89	91	3	412	28	1	27	41	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199