genome.fa.s18.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  85  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30066866--30066956	44	2.1	44	91	0	146	48	9	12	29	1.73
30068708--30068754	23	2.1	22	84	4	58	61	27	2	8	1.36
30069737--30070023	107	2.7	107	90	1	443	36	18	14	29	1.91
30071696--30071733	20	1.9	20	89	10	60	78	0	7	13	0.94
30072565--30073062	183	2.7	183	88	1	703	28	22	19	30	1.98
30072936--30073050	44	2.6	44	80	2	124	27	23	21	26	1.99
30073406--30073640	104	2.3	104	90	1	355	31	20	17	30	1.96
30074010--30074068	24	2.5	24	80	0	73	30	20	11	37	1.89
30074540--30074745	108	1.9	108	90	0	331	47	11	16	24	1.80
30075070--30075128	11	5.2	11	81	4	55	6	10	0	83	0.82
30075070--30075126	17	3.3	16	75	20	53	7	10	0	82	0.84
30078879--30079170	107	2.7	107	88	2	428	36	18	14	30	1.91
30086225--30086259	6	5.8	6	100	0	70	65	17	0	17	1.27
30086257--30086283	8	3.4	8	100	0	54	55	11	11	22	1.66
30086307--30086354	18	2.7	18	75	12	53	29	10	20	39	1.86
30095001--30095036	18	1.9	18	88	5	54	61	0	0	38	0.96
30095001--30095042	18	2.3	18	84	8	50	61	0	2	35	1.09
30095049--30095088	21	2.0	21	85	9	57	62	5	2	30	1.29
30101851--30102099	50	4.8	50	84	6	277	20	28	24	26	1.99
30101850--30102099	100	2.4	104	87	6	348	20	28	24	26	1.99
30102194--30102225	13	2.5	13	94	0	55	56	12	0	31	1.37
30102437--30102494	30	1.9	30	89	0	89	31	24	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30105277--30105327	16	3.2	15	78	13	57	64	0	1	33	1.05
30105257--30105327	32	2.1	33	84	7	90	64	0	2	32	1.08
30108882--30108942	32	1.9	32	83	6	79	37	6	14	40	1.72
30109360--30109392	3	11.0	3	100	0	66	66	0	0	33	0.92
30111020--30111173	46	3.0	53	82	12	189	31	20	17	30	1.95
30111075--30111379	46	7.1	45	81	14	358	29	21	14	34	1.93
30111143--30111297	36	4.0	36	79	15	175	28	20	14	36	1.92
30111097--30111343	82	3.0	82	94	0	422	28	21	13	35	1.92
30114407--30114467	23	2.6	23	86	2	77	36	21	19	22	1.95
30114513--30114554	19	2.2	19	83	12	50	40	4	4	50	1.45
30115741--30115843	51	2.0	51	96	3	190	35	18	17	28	1.94
30121711--30121752	15	2.6	16	82	17	52	23	30	26	19	1.98
30132484--30132524	21	1.9	22	90	5	66	31	0	7	60	1.24
30140210--30140279	30	2.3	30	85	9	90	38	1	8	51	1.41
30150796--30150831	3	12.0	3	100	0	72	33	0	0	66	0.92
30155393--30155482	22	4.1	22	81	8	103	40	16	22	21	1.92
30155379--30155482	44	2.4	44	86	0	136	43	16	21	19	1.88
30155977--30156059	42	2.0	42	85	0	112	26	24	24	25	2.00
30158845--30158879	17	2.0	17	88	5	52	34	8	5	51	1.56
30164479--30164505	12	2.2	12	100	0	54	44	0	7	48	1.31
30164866--30164918	21	2.5	21	93	0	88	30	37	9	22	1.86
30165712--30165764	21	2.5	21	84	0	70	26	7	35	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30166919--30166951	16	2.1	16	100	0	66	27	12	12	48	1.76
30166978--30167077	51	2.0	51	85	0	137	31	22	17	30	1.96
30167033--30167148	44	2.6	44	77	0	124	25	25	18	31	1.97
30167037--30167544	190	2.7	189	88	2	743	29	20	18	32	1.96
30167432--30167528	44	2.2	45	86	1	133	25	23	19	30	1.98
30167432--30167543	44	2.5	45	81	7	129	28	20	20	30	1.98
30175658--30175700	19	2.2	20	88	8	63	44	4	23	27	1.73
30179242--30179318	3	25.3	3	71	7	57	59	3	6	29	1.40
30179245--30179309	24	2.7	24	83	9	71	60	4	6	29	1.41
30186562--30186595	17	1.9	18	88	5	52	29	11	14	44	1.81
30187673--30187770	9	10.3	9	73	15	65	35	0	3	61	1.12
30187741--30187805	20	3.3	20	83	10	73	38	1	6	53	1.35
30187737--30187805	19	3.7	18	84	7	77	40	1	5	52	1.34
30189251--30189310	17	3.5	17	90	0	93	18	43	23	15	1.87
30189356--30189447	40	2.3	40	85	7	116	21	38	22	17	1.93
30191904--30192012	51	2.1	51	89	3	166	44	7	19	28	1.77
30195813--30195875	26	2.5	25	87	7	92	36	3	23	36	1.71
30200562--30200623	30	2.1	30	100	0	124	38	20	6	33	1.79
30201492--30201529	20	1.9	20	88	0	58	60	10	2	26	1.43
30204698--30204723	13	2.0	13	100	0	52	30	23	23	23	1.99
30205768--30205793	13	2.0	13	100	0	52	30	23	23	23	1.99
30210865--30210889	6	4.2	6	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30211806--30211867	5	12.6	5	71	21	51	77	3	19	0	0.90
30211805--30211868	25	2.6	24	90	9	94	76	3	20	0	0.92
30211807--30211868	29	2.1	29	85	5	81	75	3	20	0	0.94
30214850--30214909	27	2.4	25	80	8	68	66	1	1	30	1.11
30214835--30215056	10	23.3	10	70	15	73	62	4	3	30	1.29
30214986--30215045	28	2.1	28	82	11	70	60	0	5	35	1.19
30215575--30215616	18	2.3	18	84	8	50	30	2	4	61	1.29
30216499--30216532	17	1.9	18	88	5	52	11	8	8	70	1.34
30219211--30219554	102	3.4	101	88	2	458	28	14	26	30	1.95
30219211--30219548	51	6.7	50	82	5	356	28	14	26	30	1.95
30220659--30220710	24	2.2	24	89	0	77	55	9	1	32	1.43
30221617--30221727	56	2.0	56	96	0	204	22	23	17	36	1.94
30222668--30222719	24	2.2	24	89	0	77	55	9	1	32	1.43
30226589--30226624	16	2.2	16	95	0	63	38	2	5	52	1.39
30226879--30226916	17	2.2	17	90	0	58	21	13	0	65	1.26
30229988--30230165	45	4.0	44	82	9	236	27	19	23	29	1.98
30232433--30232497	32	2.0	32	96	0	121	33	20	6	40	1.77
30232900--30232959	30	2.0	31	90	3	95	20	35	0	45	1.51
30234368--30234408	21	1.9	22	90	5	66	46	29	0	24	1.53
30258146--30258224	25	3.2	25	77	10	83	31	24	27	16	1.96
30260034--30260075	22	1.9	22	85	9	59	69	9	2	19	1.28
30261149--30261191	21	2.0	23	81	9	54	44	11	11	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30261212--30261267	20	2.7	21	81	13	53	69	7	12	10	1.36
30261223--30261267	21	2.1	23	88	12	69	68	8	8	13	1.38
30264057--30264270	34	6.3	34	87	2	286	40	15	25	19	1.90
30264112--30264204	17	5.5	17	65	14	57	41	16	24	17	1.89
30264073--30264270	103	1.9	102	88	1	297	39	16	25	18	1.91
30264072--30264274	69	3.0	69	88	2	293	39	16	25	18	1.91
30267185--30267224	17	2.3	18	86	4	55	52	15	2	30	1.55
30270334--30270385	26	2.0	26	100	0	104	34	7	7	50	1.60
30271226--30271639	106	3.9	106	88	1	594	33	19	17	30	1.94
30280030--30280088	31	1.9	31	100	0	118	38	20	6	33	1.79
30286312--30286417	42	2.5	42	87	3	151	21	17	19	40	1.91
30286483--30286516	14	2.4	14	100	0	68	55	23	8	11	1.63
30286738--30286803	21	3.1	21	86	0	87	3	48	18	30	1.63
30292305--30292383	16	4.6	17	74	14	65	37	1	17	43	1.58
30292316--30292522	9	23.4	9	71	14	128	34	0	21	42	1.57
30292305--30292385	25	3.2	25	77	10	101	37	1	18	43	1.58
30292305--30292471	25	7.1	24	70	21	97	35	0	19	43	1.56
30292356--30292473	62	1.9	61	86	6	166	33	0	21	44	1.52
30294929--30295096	84	2.0	83	91	1	273	30	18	12	38	1.88
30295337--30295503	83	2.0	83	91	4	275	30	17	12	39	1.87
30294800--30295827	407	2.5	406	97	0	1912	33	14	13	38	1.86
30296438--30296469	15	2.1	16	94	5	57	50	3	0	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30296556--30296606	15	3.3	15	81	13	59	41	39	0	19	1.52
30296556--30296609	8	7.0	8	83	6	67	38	40	0	20	1.53
30296556--30296606	23	2.2	23	89	0	75	41	39	0	19	1.52
30296565--30296612	15	3.1	15	82	14	62	41	35	0	22	1.54
30296656--30296689	14	2.5	13	90	4	50	41	35	0	23	1.55
30296965--30297337	114	3.3	109	80	8	383	27	24	23	24	2.00
30316596--30316638	18	2.4	18	80	7	52	46	2	0	51	1.13
30336537--30336587	5	9.8	5	83	8	57	76	7	0	15	1.00
30336537--30336586	27	1.9	26	84	8	66	76	8	0	16	1.02
30339980--30340087	15	7.2	15	67	12	78	44	7	22	25	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199