genome.fa.s18.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  115  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38072412--38072706	51	5.8	50	80	6	308	28	26	15	28	1.96
38072412--38072706	102	2.9	102	90	0	439	28	26	15	28	1.96
38072413--38072702	153	1.9	151	82	4	359	29	26	15	28	1.96
38083521--38083556	18	2.1	17	89	5	54	11	5	22	61	1.50
38096574--38096869	50	5.8	50	83	4	301	22	29	21	26	1.99
38098671--38098719	21	2.3	21	78	0	62	42	8	24	24	1.81
38099406--38099559	54	2.9	53	77	4	166	31	16	28	24	1.96
38100660--38100701	19	2.2	19	91	0	66	40	11	16	30	1.85
38113562--38113594	16	2.0	17	88	5	50	39	3	0	57	1.14
38114692--38114726	17	2.1	16	89	5	52	17	0	2	80	0.84
38123510--38123554	19	2.4	19	96	0	81	40	26	11	22	1.87
38131999--38132218	73	3.0	73	94	0	377	40	23	5	31	1.76
38134017--38134343	168	1.9	168	100	0	654	38	7	25	27	1.84
38148437--38148475	20	2.0	20	89	0	60	46	0	5	48	1.24
38154513--38154749	129	1.8	129	82	3	307	30	18	21	29	1.97
38157607--38157659	23	2.4	22	76	20	56	9	18	1	69	1.25
38161040--38161077	20	1.9	20	100	0	76	36	15	21	26	1.93
38175684--38175738	18	3.1	17	87	7	74	14	3	0	81	0.82
38175684--38175732	6	8.2	6	95	0	89	16	2	0	81	0.78
38178990--38179041	20	2.6	20	93	0	86	46	1	30	21	1.62
38189353--38189447	47	2.0	47	100	0	190	27	25	6	41	1.79
38194808--38194846	20	2.0	20	90	10	62	51	30	2	15	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38216232--38216302	35	2.0	35	94	0	124	28	14	12	45	1.81
38216787--38216917	50	2.6	49	80	3	145	29	26	17	26	1.98
38222555--38222797	51	4.8	51	74	6	208	30	26	17	25	1.97
38222552--38222793	101	2.4	101	82	2	281	30	26	18	25	1.98
38222547--38222831	101	2.8	98	77	7	259	30	27	16	26	1.97
38223192--38223222	14	2.2	14	94	0	53	51	6	9	32	1.60
38224672--38224713	22	2.1	19	86	13	57	45	2	0	52	1.13
38226233--38226309	3	25.7	3	100	0	154	66	0	33	0	0.92
38234298--38234377	20	4.0	20	74	6	90	41	21	28	8	1.83
38234295--38234375	40	2.0	40	85	0	108	43	19	28	8	1.81
38237989--38238055	20	3.3	20	70	13	66	40	20	26	11	1.88
38245438--38245671	81	2.9	79	81	6	258	36	18	20	23	1.95
38245438--38245670	27	8.7	27	81	3	229	36	18	20	24	1.95
38245710--38245791	24	3.5	24	85	5	96	19	7	25	47	1.75
38245855--38245925	27	2.7	26	77	12	65	23	23	19	32	1.98
38245960--38246177	32	6.8	32	78	1	231	19	21	23	34	1.96
38245960--38246177	64	3.4	64	90	1	339	19	21	23	34	1.96
38246247--38246299	26	2.0	26	88	0	79	18	28	20	32	1.97
38246415--38246468	28	1.9	28	85	7	74	20	27	22	29	1.98
38253844--38253989	37	4.0	37	92	1	233	25	21	16	36	1.94
38253953--38254175	52	4.6	46	87	7	284	28	22	14	34	1.93
38254042--38254075	7	4.7	7	88	3	50	26	26	2	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38259325--38259362	18	2.1	18	90	5	58	15	15	0	68	1.22
38273008--38273558	47	11.7	47	95	0	944	32	8	29	29	1.88
38273677--38273755	37	2.1	37	90	0	122	24	18	31	25	1.98
38284199--38284235	19	1.9	19	94	0	65	16	16	24	43	1.87
38286385--38286429	22	2.0	23	86	4	65	44	20	13	22	1.85
38295698--38295774	39	2.0	39	94	0	136	37	16	10	35	1.83
38297230--38297276	21	2.2	21	84	3	58	36	19	17	27	1.93
38317116--38317151	18	2.0	18	88	0	54	33	5	38	22	1.77
38326916--38327041	42	2.9	42	81	8	121	32	23	16	26	1.96
38326916--38327041	43	2.9	43	80	8	123	32	23	16	26	1.96
38352028--38352097	24	2.8	25	78	10	72	31	21	24	22	1.98
38352054--38352100	24	2.0	24	95	0	85	36	17	23	23	1.95
38353946--38353990	16	2.8	17	75	25	53	40	22	0	37	1.54
38354168--38354238	25	2.8	25	84	0	106	25	21	21	32	1.98
38362577--38362638	31	2.1	30	82	17	76	45	8	17	29	1.77
38369526--38369551	9	2.9	9	100	0	52	11	0	0	88	0.52
38368677--38371134	843	2.9	845	96	1	4619	33	19	12	34	1.89
38380699--38380821	52	2.4	52	84	6	164	43	5	1	49	1.36
38380784--38380858	38	2.0	38	94	0	132	42	9	0	48	1.35
38391581--38392059	242	2.0	242	99	0	949	29	9	17	43	1.81
38393637--38393772	49	2.8	50	82	3	168	31	21	22	24	1.98
38405832--38405919	44	2.0	44	97	0	167	22	14	18	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38407936--38408384	27	16.6	27	88	0	592	18	18	21	40	1.91
38414503--38414692	51	3.8	50	77	6	195	30	28	16	23	1.97
38414503--38414689	101	1.8	101	88	5	270	30	28	17	24	1.97
38420945--38421194	50	4.9	50	84	5	306	26	21	30	22	1.99
38429715--38429765	24	2.1	24	100	0	102	35	0	19	45	1.51
38460165--38460248	25	3.4	25	83	3	107	29	22	21	26	1.99
38460165--38460267	50	2.1	50	82	10	122	29	23	21	26	1.99
38460165--38460267	25	4.1	25	81	7	104	29	23	21	26	1.99
38461875--38461917	16	2.7	16	81	0	50	13	23	6	55	1.62
38462174--38462366	50	3.7	50	78	9	192	22	26	22	27	1.99
38462174--38462366	100	1.9	105	83	6	261	22	26	22	27	1.99
38466776--38466957	30	6.1	30	79	5	206	24	20	13	41	1.88
38466800--38466957	60	2.6	60	93	2	264	23	20	13	42	1.87
38466776--38466939	90	1.8	90	85	2	231	24	20	13	42	1.88
38469052--38469087	19	1.9	19	88	5	56	25	11	8	55	1.62
38487075--38487214	25	5.6	25	77	3	140	30	24	22	23	1.99
38487075--38487214	50	2.8	50	86	5	178	30	24	22	23	1.99
38489048--38489231	79	2.3	81	82	7	225	24	22	27	25	2.00
38489047--38489231	40	4.7	40	83	6	225	24	22	27	25	2.00
38489100--38489264	79	2.1	79	83	6	201	26	20	27	26	1.99
38496999--38497183	79	2.3	81	84	7	236	24	22	27	25	2.00
38497000--38497183	40	4.6	40	83	9	216	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38497052--38497216	79	2.1	79	84	6	210	26	21	27	25	1.99
38499410--38499448	20	2.0	20	85	10	53	12	7	30	48	1.69
38500556--38500580	11	2.3	11	100	0	50	28	0	0	72	0.86
38505478--38505545	20	3.4	20	86	11	95	29	17	29	23	1.97
38505478--38505527	10	5.1	9	82	17	64	32	16	30	22	1.95
38506298--38506330	16	2.0	17	88	5	50	39	3	12	45	1.57
38508166--38508226	30	2.0	30	96	0	113	32	14	27	24	1.95
38510156--38510265	39	2.8	39	76	0	130	31	14	29	24	1.95
38515009--38515042	14	2.4	14	95	0	59	35	44	11	8	1.72
38520126--38520158	14	2.4	14	94	0	57	27	45	21	6	1.75
38523759--38523784	12	2.2	12	100	0	52	7	30	38	23	1.83
38525961--38526145	79	2.3	82	83	7	229	24	27	22	24	2.00
38525942--38526145	40	5.1	40	81	8	229	24	27	22	25	2.00
38533923--38534107	79	2.3	82	83	7	229	24	27	22	24	2.00
38533904--38534107	40	5.1	40	81	8	229	24	27	22	25	2.00
38536914--38536966	13	4.1	13	80	0	70	32	7	26	33	1.84
38546135--38546221	26	3.3	26	73	1	84	24	24	18	33	1.97
38565880--38566009	43	3.0	43	78	10	140	23	18	28	30	1.98
38581028--38581061	16	2.1	16	100	0	68	5	11	35	47	1.65
38590037--38590081	23	2.0	22	87	8	65	66	4	0	28	1.11
38592593--38592671	26	3.0	26	85	3	88	17	20	22	39	1.92
38592610--38592677	26	2.6	27	90	4	104	17	20	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38597427--38597664	120	2.0	120	90	0	377	30	23	10	35	1.89
38602073--38602120	24	2.0	24	100	0	96	33	16	29	20	1.95
38603562--38603598	18	2.0	19	89	5	58	51	0	43	5	1.24
38608484--38608716	106	2.2	106	89	1	342	24	28	25	21	1.99
38615240--38615293	23	2.5	20	78	21	56	35	22	0	42	1.54
38615331--38615416	45	1.9	45	92	0	145	36	24	15	24	1.94
38615427--38615562	51	2.7	51	82	7	179	31	26	15	26	1.96
38621007--38621100	45	2.1	45	91	0	152	30	23	19	26	1.98
38621095--38621342	51	4.9	51	77	6	263	30	26	16	26	1.97
38621106--38621342	101	2.3	101	88	2	368	31	26	16	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199