genome.fa.s18.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  139  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46316820--46316866	15	3.3	15	71	17	55	44	6	19	29	1.75
46316815--46316866	27	1.9	27	100	0	104	40	5	23	30	1.78
46322620--46322696	38	2.0	38	97	0	145	28	27	12	31	1.93
46327620--46327646	8	3.4	8	100	0	54	70	0	0	29	0.88
46330404--46330457	18	3.0	18	73	7	56	50	1	5	42	1.36
46333732--46333806	27	2.8	27	83	0	105	38	25	18	17	1.92
46333732--46333817	27	3.2	26	77	9	84	36	26	17	19	1.94
46334171--46334259	28	3.2	28	91	1	135	23	24	22	29	1.99
46340283--46340307	13	1.9	13	100	0	50	60	0	16	24	1.36
46349769--46349952	92	2.0	92	93	0	314	25	22	13	39	1.90
46357116--46357152	17	2.2	17	95	0	65	40	0	37	21	1.54
46357611--46357638	2	14.0	2	100	0	56	50	0	0	50	1.00
46362318--46362378	32	1.9	32	83	12	81	49	1	4	44	1.33
46362337--46362378	20	2.1	20	86	0	57	47	0	7	45	1.30
46370911--46370986	36	2.0	39	90	7	122	27	15	6	50	1.69
46371063--46371126	27	2.4	27	89	2	94	51	4	3	40	1.38
46376755--46376786	16	2.0	16	93	0	55	25	15	0	59	1.36
46377734--46377884	74	2.0	74	96	0	275	45	12	15	26	1.82
46381804--46381847	23	1.9	23	95	0	79	40	13	20	25	1.89
46383007--46383059	22	2.4	22	77	0	61	43	18	20	16	1.88
46383050--46383188	32	4.4	32	83	0	163	37	17	22	23	1.94
46383246--46383296	27	1.9	26	84	11	68	27	25	29	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46383360--46383417	24	2.4	24	91	5	91	50	24	6	18	1.72
46383360--46383446	24	3.6	24	77	14	72	47	24	6	21	1.75
46383463--46383581	27	4.5	26	77	7	89	23	21	17	37	1.94
46383504--46383851	27	12.9	27	79	7	314	22	19	19	37	1.94
46383504--46383900	81	4.9	81	80	7	355	22	19	20	38	1.94
46383489--46383888	27	14.8	27	76	9	255	22	19	20	38	1.94
46393447--46393524	26	3.1	25	70	7	68	39	16	19	24	1.91
46397582--46397704	26	5.0	26	66	21	84	39	21	20	18	1.92
46401530--46401754	40	5.7	40	82	6	233	25	28	21	25	1.99
46401686--46401763	40	1.9	41	82	10	97	26	28	20	24	1.99
46409438--46409661	40	5.7	40	82	7	233	25	28	20	25	1.99
46409438--46409662	79	2.8	78	80	6	247	25	28	20	25	1.99
46409593--46409670	40	1.9	41	82	10	97	26	28	20	24	1.99
46419081--46419154	29	2.6	28	75	14	71	17	14	0	67	1.23
46425377--46425413	9	4.1	9	92	0	65	29	10	13	45	1.77
46427928--46428100	27	6.4	27	82	4	201	39	17	20	22	1.92
46427932--46428103	81	2.1	81	84	2	229	40	18	19	22	1.92
46428319--46428363	14	3.4	14	73	17	51	20	17	15	46	1.84
46428276--46428370	26	3.7	26	91	1	140	21	21	16	41	1.91
46428281--46428401	51	2.4	51	78	4	127	19	22	18	40	1.91
46428512--46428630	28	4.3	28	83	4	152	24	24	21	30	1.99
46435185--46435309	27	4.6	27	88	0	169	42	21	17	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46435185--46435337	81	1.9	81	82	5	193	41	21	16	20	1.90
46435475--46435549	26	2.9	27	84	4	82	20	21	20	38	1.93
46435534--46435601	26	2.6	26	92	0	118	17	23	20	38	1.93
46435710--46435770	28	2.2	28	78	0	68	22	19	24	32	1.97
46437592--46437648	23	2.4	24	88	8	82	29	49	1	19	1.58
46448965--46449002	18	2.1	18	100	0	76	21	21	23	34	1.97
46450588--46450655	34	2.0	34	88	0	100	30	26	11	30	1.92
46458027--46458065	21	1.9	20	84	5	51	61	2	28	7	1.37
46464241--46464573	87	3.8	87	91	0	515	29	22	23	25	1.99
46466259--46466309	25	2.0	25	100	0	102	39	7	3	49	1.51
46470413--46470565	37	4.2	37	88	1	227	18	14	29	37	1.90
46470413--46470565	73	2.1	74	91	1	245	18	14	29	37	1.90
46471518--46471574	24	2.4	24	87	0	78	22	43	26	7	1.78
46471438--46471664	120	1.9	120	86	3	323	22	28	29	19	1.98
46471551--46471727	96	1.8	96	85	0	246	23	27	28	20	1.99
46471577--46471762	96	1.9	96	81	0	219	25	25	25	23	2.00
46471752--46471858	55	2.0	55	83	1	135	21	23	29	25	1.99
46473862--46474051	40	4.8	40	82	0	191	16	28	17	36	1.92
46473862--46474051	80	2.4	80	85	0	245	16	28	17	36	1.92
46473862--46474043	20	9.1	20	67	11	95	16	29	18	35	1.93
46475342--46475588	50	4.8	50	81	5	246	27	21	27	23	1.99
46476982--46477011	14	2.1	14	93	0	51	16	0	20	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46482923--46483099	29	5.9	29	71	8	140	42	27	9	21	1.83
46482887--46483079	61	3.2	60	80	1	199	41	25	10	21	1.85
46483056--46483231	90	2.0	90	95	0	316	36	22	13	26	1.92
46483291--46483402	56	2.0	56	91	0	179	25	25	15	33	1.95
46491104--46491149	20	2.2	21	84	3	58	36	10	21	30	1.88
46492137--46492457	145	2.2	145	82	4	384	42	4	10	41	1.61
46492344--46492406	32	2.0	31	81	6	74	33	4	9	52	1.55
46500608--46500751	41	3.5	40	80	3	110	34	22	20	22	1.96
46500691--46500722	16	2.0	16	93	0	55	28	25	28	18	1.98
46503599--46503675	26	2.9	26	82	1	91	38	7	18	35	1.79
46507054--46507119	27	2.4	27	85	5	80	39	24	24	12	1.89
46511527--46511596	27	2.6	27	79	0	68	32	17	31	18	1.94
46516454--46516564	24	4.6	24	82	0	132	51	4	25	18	1.65
46520731--46520781	25	2.0	25	100	0	102	31	19	15	33	1.93
46523343--46523370	4	7.0	4	100	0	56	25	0	0	75	0.81
46527992--46528026	17	2.2	15	90	10	52	62	2	22	11	1.41
46534210--46534242	11	3.0	11	100	0	66	45	9	18	27	1.79
46535172--46535262	43	2.1	43	91	0	146	31	4	6	57	1.44
46535179--46535278	43	2.3	43	86	1	130	29	6	7	58	1.49
46535499--46535577	39	2.0	39	97	0	149	24	34	20	21	1.97
46541533--46541561	6	4.8	6	100	0	58	65	17	0	17	1.27
46541976--46542014	20	2.0	20	90	5	62	74	10	0	15	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46542303--46542589	56	5.1	57	81	5	309	29	11	16	42	1.83
46542303--46542553	113	2.2	114	87	3	357	30	10	15	43	1.81
46542303--46542591	113	2.6	113	84	5	275	29	11	15	42	1.82
46543132--46543310	89	2.0	89	100	0	358	36	12	18	32	1.88
46545370--46545424	26	2.1	27	75	21	64	32	7	18	41	1.78
46545440--46545502	9	6.9	9	82	8	74	26	11	20	41	1.86
46545876--46545936	29	2.0	31	84	15	83	36	8	4	50	1.54
46550359--46550572	27	8.0	27	87	1	268	42	21	17	19	1.89
46550361--46550572	80	2.6	80	88	0	298	42	20	17	19	1.89
46550994--46551192	28	7.1	28	85	4	233	24	21	22	32	1.98
46552650--46552684	18	1.9	18	88	11	54	42	14	17	25	1.86
46559197--46559272	27	2.8	27	81	0	80	23	28	13	34	1.92
46561416--46561449	12	2.8	12	86	0	50	44	0	23	32	1.54
46563449--46563489	21	2.0	21	90	0	64	46	4	0	48	1.23
46565583--46565636	27	2.0	28	85	7	76	27	11	20	40	1.86
46569462--46569524	27	2.3	27	78	5	74	19	15	20	44	1.87
46573241--46573313	38	1.9	37	86	8	103	31	21	1	45	1.61
46573443--46573543	23	4.4	23	89	0	157	30	24	21	22	1.99
46580718--46580766	17	2.9	16	80	16	55	20	4	2	73	1.10
46580718--46580765	4	11.2	4	79	20	53	20	4	2	72	1.11
46580718--46580765	9	5.6	8	79	20	53	20	4	2	72	1.11
46583076--46583184	24	4.5	24	72	11	71	19	28	17	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46583369--46583439	25	2.8	25	76	6	63	21	23	21	33	1.97
46584399--46584583	74	2.5	73	78	4	194	22	25	25	25	2.00
46590786--46590842	25	2.3	24	81	3	69	17	26	22	33	1.96
46591015--46591111	25	3.9	25	76	8	72	17	24	25	31	1.97
46597511--46597559	20	2.5	20	81	15	66	57	6	24	12	1.58
46601081--46601195	43	2.6	44	78	11	121	26	20	26	27	1.99
46603006--46603083	38	2.1	38	95	0	138	46	10	16	26	1.79
46619564--46619673	51	2.1	52	86	5	152	43	5	21	29	1.75
46622649--46622687	14	3.0	13	88	7	53	56	0	0	43	0.99
46623113--46623209	48	2.0	48	93	0	167	28	11	12	47	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199