genome.fa.s18.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  142  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47202966--47203177	104	2.0	104	94	1	372	18	19	30	31	1.96
47203096--47203249	73	2.1	73	93	1	265	22	16	29	30	1.96
47210445--47210668	104	2.2	104	93	1	378	17	19	31	31	1.95
47210587--47210738	71	2.1	72	92	1	252	23	17	29	30	1.97
47216600--47216652	13	4.1	13	78	9	63	60	1	0	37	1.08
47226911--47226960	18	2.6	19	78	15	50	34	0	10	56	1.33
47233546--47233589	11	4.2	11	80	11	56	18	2	29	50	1.59
47233562--47233642	9	8.9	9	84	8	83	23	8	28	39	1.84
47233551--47233598	20	2.4	20	92	0	78	20	4	31	43	1.71
47233565--47233642	26	2.9	27	82	5	95	24	8	25	41	1.84
47236891--47236963	22	3.3	23	86	9	98	27	27	1	43	1.63
47236891--47236963	11	6.5	12	77	13	84	27	27	1	43	1.63
47237294--47239104	906	2.0	906	98	0	3496	27	19	25	27	1.99
47240286--47240368	25	3.3	25	96	0	148	42	0	14	43	1.45
47240231--47240439	95	2.2	94	77	13	234	38	0	11	48	1.44
47255532--47255775	121	2.0	121	96	0	452	38	20	11	28	1.88
47257790--47258167	125	3.0	125	83	3	517	30	21	16	30	1.96
47258551--47258858	147	2.1	145	86	5	431	42	10	4	42	1.59
47262473--47263111	46	13.5	46	85	9	799	29	22	15	33	1.94
47268680--47268730	24	2.1	25	88	3	77	58	0	3	37	1.16
47269003--47269045	22	2.0	22	85	0	59	53	2	0	44	1.13
47289206--47289358	66	2.3	68	80	2	175	26	21	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47290491--47290543	26	2.0	26	89	7	81	20	7	13	58	1.59
47290939--47290984	19	2.4	20	79	17	53	76	0	6	17	1.00
47294499--47294545	24	1.9	25	86	4	69	21	4	8	65	1.37
47310529--47310587	27	2.2	27	93	0	100	27	45	11	15	1.81
47311178--47311219	14	2.9	14	82	3	57	38	23	2	35	1.68
47311264--47311297	17	1.9	18	88	5	52	38	8	11	41	1.73
47317838--47317896	23	2.5	24	86	2	84	40	15	13	30	1.86
47318462--47318494	14	2.4	14	100	0	66	24	18	30	27	1.98
47318528--47318580	27	2.0	27	88	0	79	20	24	28	26	1.99
47318847--47318930	22	3.8	22	79	6	89	42	14	9	33	1.78
47322216--47322268	23	2.3	23	93	3	90	16	7	43	32	1.76
47331924--47332094	63	2.7	63	78	7	177	26	23	22	28	1.99
47334883--47335114	50	4.6	50	88	0	329	21	30	21	26	1.98
47337080--47337129	19	2.7	18	87	6	82	72	2	16	10	1.21
47337329--47337383	27	2.1	26	86	10	76	70	0	1	27	0.97
47349494--47349579	25	3.4	25	93	1	136	37	16	13	32	1.88
47349494--47349592	50	2.0	51	84	6	130	38	15	15	31	1.88
47353957--47354031	12	6.1	12	68	11	53	77	6	8	8	1.13
47353960--47354024	31	2.1	30	82	2	76	76	7	7	7	1.15
47354047--47354088	22	1.9	22	85	0	57	66	0	21	11	1.23
47355298--47355628	87	3.8	87	90	0	518	29	22	22	25	1.99
47355489--47355626	44	3.2	43	67	22	108	26	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47355745--47356000	44	5.9	44	70	10	163	31	21	23	23	1.98
47356841--47356873	13	2.4	14	95	5	59	9	3	6	81	0.95
47359162--47359211	24	2.1	24	85	7	66	46	2	0	52	1.12
47361235--47361280	19	2.5	19	82	6	60	52	2	2	43	1.25
47361234--47361280	17	2.6	18	83	6	60	53	2	2	42	1.25
47370022--47370050	14	2.1	14	100	0	58	27	6	13	51	1.66
47372067--47372137	29	2.4	30	88	2	99	18	25	14	42	1.87
47378640--47380221	795	2.0	792	91	1	2549	35	18	13	32	1.90
47380713--47380749	18	2.1	18	89	0	56	16	24	5	54	1.63
47383000--47383155	50	3.1	50	87	1	215	26	21	31	20	1.98
47383444--47383471	12	2.3	12	100	0	56	57	7	17	17	1.62
47391037--47391075	20	2.0	20	90	10	62	15	23	5	56	1.59
47407898--47408009	42	2.7	42	81	2	127	28	16	24	30	1.97
47408690--47408788	35	2.9	34	83	5	119	24	11	20	44	1.83
47408776--47408906	69	1.9	69	83	0	172	26	14	17	41	1.88
47424495--47424594	28	3.6	28	75	2	105	25	26	18	31	1.97
47431861--47431975	27	4.3	27	85	4	135	45	18	14	21	1.85
47432303--47432412	28	4.0	28	81	1	132	23	23	21	30	1.99
47432388--47432452	32	2.0	34	81	6	80	27	24	23	24	2.00
47435925--47436111	68	2.7	69	89	1	286	26	14	16	42	1.86
47442603--47442639	15	2.4	16	82	17	51	59	0	0	40	0.97
47443651--47443676	13	2.0	13	100	0	52	38	15	23	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47443151--47444189	524	2.0	524	94	0	1848	28	21	18	31	1.97
47453102--47453147	22	2.0	24	87	8	69	58	2	2	36	1.22
47453923--47453980	27	2.1	28	87	3	82	50	12	12	25	1.74
47459385--47459436	25	2.1	24	85	3	68	51	1	1	44	1.23
47461210--47461251	20	2.0	21	86	13	61	38	19	16	26	1.92
47470657--47470699	22	2.0	22	86	9	61	34	9	13	41	1.77
47474818--47474923	36	2.9	36	88	0	149	41	18	18	20	1.91
47476517--47476647	55	2.4	55	81	3	156	25	18	24	31	1.97
47476506--47476647	56	2.6	56	80	3	162	25	19	25	30	1.98
47479298--47479539	129	1.9	128	81	5	292	24	27	13	33	1.93
47481675--47481701	4	6.8	4	100	0	54	48	0	0	51	1.00
47482314--47482352	16	2.4	17	79	12	55	48	2	0	48	1.15
47482883--47482912	15	2.1	14	93	6	51	53	3	0	43	1.17
47484243--47484413	75	2.3	75	81	2	200	24	25	22	27	2.00
47487226--47487264	20	1.9	20	89	5	60	35	2	0	61	1.10
47488310--47488341	6	5.3	6	96	0	55	50	0	37	12	1.41
47492232--47492282	26	2.0	26	96	0	93	29	35	23	11	1.90
47492138--47492360	103	2.2	104	92	2	369	31	31	18	17	1.95
47492689--47492752	30	2.2	29	81	10	76	29	28	6	35	1.82
47492696--47492752	30	1.9	30	85	3	80	29	24	7	38	1.82
47499605--47499656	26	2.0	26	92	0	86	28	34	21	15	1.94
47499617--47499767	72	2.1	71	91	2	241	30	29	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47499686--47499909	104	2.2	104	93	1	378	31	31	19	17	1.95
47500237--47500300	30	2.2	29	81	10	76	29	28	6	35	1.82
47500244--47500300	30	1.9	30	85	3	80	29	24	7	38	1.82
47502554--47502710	46	3.4	46	76	12	169	22	19	28	29	1.98
47510099--47510224	46	2.7	46	91	0	198	21	20	26	30	1.98
47514231--47514274	22	2.0	22	95	0	79	25	36	4	34	1.76
47514754--47514831	33	2.4	33	83	12	106	19	24	12	43	1.86
47522406--47522459	19	2.8	19	97	0	99	37	9	16	37	1.81
47522406--47522482	19	3.7	22	86	6	76	36	7	16	38	1.78
47522974--47523043	35	2.0	35	81	15	83	21	5	2	70	1.22
47523115--47523178	23	2.9	21	80	15	67	26	1	6	65	1.25
47530697--47530833	21	6.5	21	76	1	89	14	25	17	42	1.87
47530679--47530806	42	3.1	42	84	3	152	17	24	16	42	1.89
47530699--47530810	42	2.7	42	87	2	154	14	25	16	42	1.86
47530745--47530833	21	4.2	21	80	0	106	14	26	17	40	1.89
47531345--47531390	23	2.0	23	95	0	83	41	4	23	30	1.74
47539997--47540035	20	2.0	20	89	0	60	25	25	0	48	1.51
47540022--47540051	15	1.9	16	93	6	53	20	23	3	53	1.60
47552396--47552584	41	4.6	41	89	0	252	28	23	19	29	1.98
47562883--47562916	16	2.1	16	88	0	50	47	8	2	41	1.50
47563345--47563409	29	2.3	29	89	2	96	47	12	20	20	1.81
47565171--47565220	18	2.8	18	79	11	66	50	20	2	28	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47565440--47565505	33	2.0	34	87	3	98	46	15	6	31	1.70
47565479--47565553	29	2.5	30	80	2	98	44	14	8	33	1.75
47573589--47573773	79	2.3	81	84	7	236	25	27	22	24	2.00
47573589--47573773	40	4.7	40	83	7	234	25	27	22	24	2.00
47575866--47576285	201	2.1	203	89	2	641	34	11	12	41	1.79
47576479--47576756	148	1.9	148	88	0	423	25	7	17	48	1.73
47578767--47578829	23	2.7	23	75	0	63	25	11	20	42	1.85
47581050--47581460	37	9.7	44	87	8	355	35	15	22	27	1.94
47581099--47581312	52	4.2	51	87	9	314	35	14	22	27	1.94
47581050--47581312	97	2.7	95	83	13	333	34	14	22	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199