genome.fa.s18.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  119  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39480250--39481818	524	3.0	524	96	0	2888	30	17	22	28	1.97
39485558--39485590	13	2.8	12	90	9	50	36	9	15	39	1.79
39486795--39487130	51	6.6	50	75	4	305	28	14	26	30	1.95
39486791--39487132	102	3.4	102	94	0	585	28	14	26	29	1.95
39493939--39493978	21	1.9	21	84	0	53	55	0	17	27	1.43
39502951--39503086	49	2.8	49	80	5	159	28	23	25	22	1.99
39532238--39532300	23	2.7	23	90	2	90	38	33	3	25	1.72
39536719--39537133	208	2.0	209	93	1	708	34	20	12	32	1.90
39549647--39549708	30	2.1	30	90	0	97	19	17	25	37	1.94
39549823--39549894	37	1.9	37	88	0	108	33	6	20	38	1.80
39552509--39552637	66	2.0	65	89	4	197	48	7	6	37	1.59
39554736--39554983	50	4.8	50	83	6	275	27	21	28	22	1.99
39563765--39564011	50	4.8	52	80	8	274	26	23	28	21	1.99
39566850--39566938	45	2.0	45	90	0	142	23	22	13	40	1.89
39568010--39571799	760	5.0	762	88	1	5411	29	25	11	33	1.91
39574719--39574868	78	1.9	78	91	0	246	24	10	21	44	1.84
39581186--39581245	30	2.0	31	90	3	95	38	0	41	20	1.52
39581434--39581470	9	4.1	9	85	0	56	32	10	10	45	1.74
39582289--39582340	20	2.6	20	87	0	77	53	0	25	21	1.45
39582290--39582346	20	2.8	19	84	10	69	50	0	28	21	1.48
39596806--39596954	71	2.1	71	87	0	208	33	19	17	29	1.95
39597977--39598005	11	2.7	11	94	5	51	44	10	6	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39602922--39602946	13	1.9	13	100	0	50	4	32	8	56	1.47
39605448--39605544	33	2.8	35	72	20	89	45	3	1	50	1.24
39605727--39605779	13	4.1	13	72	0	52	35	24	7	32	1.84
39606132--39606157	11	2.4	11	100	0	52	30	15	7	46	1.74
39626920--39627005	42	2.0	43	91	6	140	24	22	2	51	1.60
39627482--39627686	68	3.0	68	94	1	349	18	31	14	36	1.90
39631553--39631651	39	2.5	39	93	0	162	28	4	22	45	1.70
39646525--39646549	7	3.6	7	100	0	50	0	28	0	72	0.86
39647229--39647259	13	2.4	13	94	0	53	9	35	3	51	1.51
39649369--39649407	20	2.0	20	85	10	53	58	2	0	38	1.12
39649389--39649656	85	3.1	84	62	23	192	47	6	8	37	1.60
39649250--39649785	176	3.0	176	99	0	1063	46	6	7	39	1.57
39649545--39649583	20	2.0	20	85	10	53	58	2	0	38	1.12
39649721--39649759	20	2.0	20	85	10	53	58	2	0	38	1.12
39653421--39653472	26	2.1	24	85	7	68	44	1	1	51	1.23
39653551--39653585	18	2.0	17	88	5	52	45	0	0	54	0.99
39653551--39653605	16	3.4	16	80	16	53	49	0	1	49	1.11
39653707--39653741	18	2.0	17	88	5	52	45	0	0	54	0.99
39653539--39653854	156	2.0	157	96	0	580	48	5	3	42	1.41
39653980--39654012	16	2.1	16	100	0	66	39	36	0	24	1.56
39662340--39662377	17	2.3	17	86	13	53	28	7	0	63	1.23
39663157--39663208	27	1.9	27	84	0	68	55	3	0	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39663395--39663494	31	3.3	31	88	2	132	19	12	14	55	1.69
39663416--39663495	29	2.7	30	88	3	108	22	11	12	53	1.70
39665896--39665920	13	1.9	13	100	0	50	40	28	0	32	1.57
39669756--39669815	29	2.0	30	87	3	86	53	0	0	46	1.00
39669794--39669885	37	2.5	37	87	1	121	47	2	1	48	1.20
39670002--39670055	16	3.4	16	76	0	63	33	20	1	44	1.62
39670150--39670184	14	2.5	14	85	0	52	48	8	0	42	1.33
39670260--39670312	25	2.0	27	82	7	65	75	3	16	3	1.10
39671923--39671951	15	1.9	15	100	0	58	72	0	0	27	0.85
39671924--39671960	15	2.4	15	90	4	56	75	0	0	24	0.80
39672118--39672175	17	3.3	18	79	11	59	63	1	0	34	1.04
39672118--39672167	16	3.0	16	83	11	64	64	2	0	34	1.05
39673002--39673092	41	2.2	41	92	1	148	31	20	5	41	1.75
39681092--39681129	12	3.2	12	85	3	51	44	18	0	36	1.50
39692964--39693039	21	3.5	22	85	5	102	32	6	25	35	1.82
39695706--39695757	26	2.0	27	88	3	79	42	42	3	11	1.59
39696890--39696935	24	1.9	24	81	0	56	34	8	4	52	1.52
39697200--39697278	30	2.7	29	85	11	108	31	11	1	55	1.43
39709769--39710003	44	5.4	44	66	13	135	34	18	19	28	1.95
39709717--39710254	175	3.1	174	91	1	864	32	19	19	28	1.96
39710271--39710426	50	3.1	50	72	6	129	33	22	19	25	1.97
39710638--39710678	16	2.5	17	80	11	50	75	7	0	17	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39710648--39710693	21	2.1	23	84	8	60	76	4	0	19	0.96
39710765--39710815	26	1.9	27	92	4	86	41	41	3	13	1.63
39711197--39711264	20	3.6	18	80	16	75	2	20	4	72	1.16
39711948--39711993	24	1.9	24	81	0	56	34	8	4	52	1.52
39712258--39712335	28	2.8	28	82	7	95	30	11	2	55	1.49
39716661--39716710	12	4.1	12	76	5	55	46	6	16	32	1.71
39716777--39716814	18	2.1	18	85	9	51	60	7	15	15	1.57
39718140--39718194	18	3.1	17	85	12	67	74	0	9	16	1.06
39718141--39718196	19	3.1	19	85	12	73	73	0	8	17	1.08
39719834--39719978	73	2.0	73	94	0	254	17	20	17	43	1.88
39722804--39722853	12	4.1	12	76	5	55	46	6	16	32	1.71
39722920--39722957	18	2.1	18	85	9	51	60	7	15	15	1.57
39725547--39725674	30	4.3	29	84	9	136	34	25	3	37	1.72
39725547--39725671	60	2.1	59	89	5	189	34	25	2	37	1.69
39730490--39730540	4	12.8	4	100	0	102	23	0	25	50	1.49
39732636--39732684	16	3.0	16	78	3	53	79	8	2	10	1.01
39732594--39732709	24	5.0	22	71	14	74	74	6	8	10	1.23
39733661--39733698	7	5.6	7	87	6	60	71	0	15	13	1.16
39733661--39733700	20	2.0	20	95	0	71	67	0	17	15	1.23
39733661--39733698	13	2.8	14	84	8	60	71	0	15	13	1.16
39733875--39733905	9	3.4	9	90	0	53	25	12	22	38	1.90
39733960--39733996	9	4.1	9	85	0	56	45	10	10	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39736274--39736561	100	2.9	99	79	5	312	34	20	19	26	1.96
39736581--39737056	44	10.9	43	69	12	172	31	21	21	25	1.98
39736584--39737037	218	2.1	220	85	4	623	31	21	21	25	1.98
39736804--39737147	174	2.0	174	88	2	521	31	21	22	25	1.98
39736665--39737095	218	2.0	218	85	3	582	31	20	21	26	1.98
39736763--39737174	87	4.8	84	74	7	308	30	22	21	25	1.99
39736980--39737357	129	2.9	128	85	3	474	30	20	20	27	1.98
39736631--39737274	44	14.9	43	69	8	295	31	21	21	26	1.98
39739308--39739333	13	2.0	13	100	0	52	30	0	7	61	1.24
39739552--39739590	16	2.4	16	91	0	60	35	12	2	48	1.55
39739550--39739614	34	1.9	34	83	0	85	33	15	4	46	1.66
39743388--39743458	21	3.3	21	75	16	74	77	4	5	12	1.09
39743411--39743438	8	3.5	8	100	0	56	89	0	0	10	0.49
39743530--39743554	11	2.3	11	100	0	50	80	0	20	0	0.72
39744410--39744451	7	6.3	7	89	10	70	71	0	14	14	1.15
39744410--39744451	13	3.2	13	96	3	75	71	0	14	14	1.15
39745775--39746251	50	9.6	50	68	6	259	34	20	18	26	1.96
39745775--39746251	99	4.8	99	84	1	524	34	20	18	26	1.96
39746364--39746741	44	8.8	44	74	8	188	29	21	22	26	1.99
39746450--39746743	44	6.8	43	75	5	220	29	21	22	27	1.99
39746452--39746828	129	2.9	128	83	4	443	30	19	21	28	1.98
39748798--39748823	13	2.0	13	100	0	52	30	0	7	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39749043--39749081	16	2.4	16	91	0	60	35	12	2	48	1.55
39749041--39749105	34	1.9	34	83	0	85	33	15	4	46	1.66
39756866--39757176	147	2.1	147	81	1	356	30	19	22	27	1.98
39769796--39769833	17	2.2	17	86	9	51	28	0	15	55	1.41
39776987--39777164	95	1.9	94	84	4	241	35	14	18	32	1.90
39779048--39779102	28	2.0	26	82	6	65	20	9	7	63	1.47
39779059--39779113	26	2.0	28	83	13	71	20	7	9	63	1.47
39779334--39779358	13	1.9	13	100	0	50	16	4	0	80	0.87
39781516--39781553	20	1.9	20	94	0	67	57	0	0	42	0.98
39781524--39781565	18	2.2	20	83	8	52	61	2	2	33	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199