genome.fa.s18.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  34  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13770488--13770672	41	4.5	41	71	16	159	54	11	0	32	1.41
13770704--13770735	7	4.6	7	96	0	55	56	0	0	43	0.99
13770850--13770886	14	2.5	14	91	8	56	0	40	0	59	0.97
13771113--13771145	8	4.1	8	96	0	57	66	0	0	33	0.92
13771133--13771173	18	2.2	19	83	12	50	51	0	0	48	1.00
13771577--13771627	2	25.5	2	100	0	102	49	50	0	0	1.00
13773883--13774101	113	1.9	114	97	0	413	34	16	19	30	1.94
13777250--13777313	28	2.1	29	86	11	85	56	4	0	39	1.20
13777265--13777322	21	2.6	23	81	15	77	60	1	0	37	1.07
13782300--13782348	21	2.3	21	89	0	71	32	32	8	26	1.86
13782761--13782808	25	2.0	24	87	4	69	52	2	2	43	1.24
13785434--13785472	19	2.1	18	85	9	51	53	7	2	35	1.43
13788465--13788527	5	12.6	5	89	0	54	50	0	3	46	1.17
13788464--13788528	10	6.2	10	76	16	60	52	0	3	44	1.16
13788460--13788533	15	4.7	15	74	14	60	52	0	2	44	1.15
13794705--13794761	25	2.2	26	81	6	71	66	0	5	28	1.13
13795195--13795235	19	2.1	20	86	4	57	56	2	9	31	1.45
13800240--13800293	26	2.0	27	86	10	76	20	9	11	59	1.59
13812963--13813033	31	2.3	31	87	2	99	32	12	11	43	1.78
13813326--13813397	30	2.4	30	76	4	74	44	8	9	37	1.68
13815172--13815213	3	14.0	3	100	0	84	33	0	0	66	0.92
13823683--13823773	41	2.2	41	94	0	155	27	19	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13829497--13829539	22	2.0	22	81	9	52	44	34	16	4	1.68
13832923--13832962	12	3.3	12	89	0	62	50	5	2	42	1.37
13847482--13847542	26	2.3	26	91	5	97	47	3	1	47	1.28
13850583--13850654	34	2.1	34	89	5	110	16	5	9	68	1.37
13873317--13873341	3	8.3	3	100	0	50	0	36	0	64	0.94
13882676--13882724	17	2.9	16	76	8	53	30	0	12	57	1.36
13885803--13885837	15	2.3	15	90	9	54	25	0	22	51	1.48
13886077--13886242	23	7.1	23	66	20	103	32	10	15	40	1.82
13886081--13886242	47	3.4	47	96	0	306	32	11	15	40	1.82
13886086--13886294	94	2.2	93	87	6	280	33	10	16	39	1.83
13886856--13886994	46	3.0	46	89	2	217	35	10	25	28	1.90
13899731--13899783	25	2.2	24	82	3	61	33	3	13	49	1.60
13905500--13905684	51	3.7	50	78	5	176	23	16	27	32	1.96
13905500--13905684	101	1.8	102	88	3	284	23	16	27	32	1.96
13905693--13905781	45	2.0	45	93	0	151	25	17	23	32	1.97
13907681--13907817	45	3.1	45	86	5	179	21	15	27	35	1.94
13911332--13911385	5	10.8	5	100	0	108	40	0	0	59	0.98
13912374--13912509	40	3.4	40	75	11	118	27	16	22	33	1.95
13927536--13927589	24	2.2	25	80	6	67	64	1	7	25	1.30
13933353--13933404	24	2.2	24	89	0	77	38	1	7	51	1.42
13936156--13936210	15	3.5	15	71	9	56	45	16	0	38	1.47
13936144--13936208	32	2.0	32	100	0	130	47	18	0	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13936144--13936193	17	3.1	17	68	8	50	50	20	0	30	1.49
13936268--13936304	19	1.9	19	89	10	58	0	24	0	75	0.80
13936339--13936398	27	2.3	26	83	11	77	46	1	1	50	1.21
13939453--13939489	9	4.1	9	92	0	65	45	13	10	29	1.77
13939547--13939609	30	2.1	30	82	5	74	20	47	0	31	1.51
13943411--13943448	20	1.9	20	88	0	58	50	13	7	28	1.69
13944481--13944516	2	18.0	2	88	11	56	2	47	0	50	1.15
13963555--13963596	21	2.1	19	86	8	57	54	4	0	40	1.21
13967750--13967819	34	1.9	38	83	16	96	51	15	5	27	1.66
13969766--13969803	20	1.9	20	100	0	76	44	0	10	44	1.38
13972261--13972296	17	2.1	17	89	0	54	11	16	8	63	1.49
14008841--14008881	21	2.0	21	90	0	64	19	29	21	29	1.98
14028097--14028123	1	27.0	1	100	0	54	0	0	0	100	0.00
14030368--14030434	21	3.2	21	93	0	107	14	22	17	44	1.86
14030611--14030656	21	2.2	21	88	3	67	39	4	28	28	1.76
14032247--14032313	34	1.9	35	90	3	109	44	13	8	32	1.75
14035684--14035735	16	3.2	16	94	0	95	36	0	34	28	1.58
14035673--14035735	32	2.0	32	93	0	108	36	1	34	26	1.67
14035714--14035823	45	2.6	43	80	9	129	33	5	29	31	1.80
14035949--14035990	15	2.7	16	82	14	52	52	2	0	45	1.13
14035958--14035999	15	2.9	15	82	10	52	52	0	0	47	1.00
14036029--14036097	33	2.1	33	91	0	111	52	11	1	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14038341--14038373	16	2.1	16	94	0	57	63	15	15	6	1.49
14041555--14041740	50	3.7	50	88	0	264	19	29	23	27	1.98
14044547--14044642	50	1.9	50	85	4	131	41	2	12	43	1.54
14044871--14044918	23	2.1	23	96	0	87	62	14	8	14	1.53
14048085--14048153	26	2.7	26	100	0	138	39	23	21	15	1.92
14054611--14054674	24	2.6	25	75	12	60	21	26	20	31	1.98
14054600--14054716	25	4.7	25	71	14	80	22	27	18	31	1.97
14062347--14062380	16	2.1	16	88	0	50	2	14	0	82	0.79
14068211--14068242	3	10.7	3	93	0	55	0	34	0	65	0.93
14068770--14068845	40	1.9	40	97	0	143	32	10	13	43	1.78
14073266--14073291	3	8.7	3	100	0	52	34	0	34	30	1.58
14073741--14073837	47	2.1	47	98	0	185	28	12	17	41	1.86
14075751--14075803	9	5.9	9	82	10	56	32	0	1	66	1.03
14075982--14076018	15	2.4	16	82	17	51	40	0	0	59	0.97
14093843--14093867	7	3.6	7	100	0	50	24	32	16	28	1.96
14095484--14095521	15	2.4	16	82	4	51	36	23	7	31	1.84
14098840--14098908	16	4.2	16	96	3	129	26	0	36	37	1.57
14098840--14098908	33	2.1	32	97	2	129	26	0	36	37	1.57
14098889--14098979	45	2.0	45	85	2	121	27	6	28	37	1.82
14099124--14099178	15	3.4	16	80	16	53	54	1	0	43	1.10
14099130--14099178	16	2.9	18	80	20	61	55	0	0	44	0.99
14099226--14099438	67	3.1	67	65	16	168	46	3	3	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14099031--14099358	156	2.1	156	97	0	620	42	3	6	46	1.46
14099300--14099334	18	2.0	17	88	5	52	54	0	0	45	0.99
14099036--14099476	156	3.1	137	68	19	315	43	3	5	46	1.43
14099238--14099516	137	2.0	135	82	6	339	45	5	3	45	1.43
14099533--14099617	26	3.2	26	74	12	91	50	0	2	47	1.14
14100497--14100531	9	4.0	9	92	7	63	65	0	0	34	0.93
14100497--14100531	17	2.0	17	94	5	61	65	0	0	34	0.93
14108944--14108994	24	2.1	24	100	0	102	35	23	7	33	1.84
14111517--14111708	90	2.1	92	88	5	284	44	4	4	46	1.41
14111741--14111774	17	2.0	17	94	0	59	44	5	0	50	1.26
14111741--14111779	17	2.4	16	87	8	53	43	5	0	51	1.24
14111745--14111784	17	2.3	18	83	12	57	47	5	0	47	1.24
14111864--14111915	15	3.6	15	80	12	56	44	0	1	53	1.11
14111740--14112031	120	2.4	120	91	3	457	41	3	5	50	1.41
14111813--14111996	59	3.1	59	63	22	130	41	2	7	48	1.44
14111993--14112034	15	2.7	16	82	14	52	45	0	2	52	1.13
14111984--14112025	15	2.9	15	82	10	52	47	0	0	52	1.00
14111968--14112260	160	1.8	162	96	2	545	48	3	3	45	1.35
14112140--14112174	18	2.0	17	88	5	52	45	0	0	54	0.99
14111969--14112210	79	3.1	75	65	15	200	47	2	3	46	1.34
14112409--14112449	16	2.6	16	96	0	73	36	36	0	26	1.57
14112648--14112690	21	2.0	21	95	0	77	27	0	37	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14112671--14112703	16	2.1	16	94	0	57	33	0	36	30	1.58
14112682--14112776	45	2.1	44	88	1	136	34	5	27	32	1.79
14112938--14112972	18	2.0	17	88	5	52	54	0	0	45	0.99
14112896--14112968	27	2.7	27	76	8	76	52	2	0	45	1.15
14112857--14113128	144	1.9	147	94	3	487	46	3	2	47	1.34
14113082--14113116	18	2.0	17	88	5	52	54	0	0	45	0.99
14113102--14113280	55	3.1	54	64	22	128	49	7	2	41	1.43
14113097--14113284	61	3.1	61	68	14	190	49	6	2	41	1.41
14113065--14113287	120	1.9	120	97	0	419	49	6	2	42	1.40
14113202--14113236	18	2.0	17	88	5	52	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199