genome.fa.s18.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  15  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6315154--6315233	22	3.7	21	88	8	115	45	0	31	23	1.54
6333202--6333238	14	2.6	14	91	4	56	78	0	21	0	0.75
6341576--6341623	25	1.9	25	87	8	71	37	22	8	31	1.84
6349204--6349299	31	3.1	31	92	3	165	45	12	9	32	1.74
6349388--6349412	3	8.3	3	100	0	50	68	0	0	32	0.90
6349868--6349893	12	2.2	12	100	0	52	34	0	34	30	1.58
6351656--6351684	3	9.7	3	100	0	58	68	0	31	0	0.89
6363907--6363939	16	2.1	16	100	0	66	24	12	24	39	1.89
6376063--6376112	26	1.9	26	91	0	82	34	10	26	30	1.89
6377518--6377555	11	3.5	11	85	0	58	47	0	0	52	1.00
6378413--6378451	21	1.9	20	84	5	51	51	0	7	41	1.31
6390740--6390778	19	2.0	21	85	10	55	30	0	2	66	1.05
6393585--6393615	8	3.9	8	91	0	53	64	0	3	32	1.09
6397617--6397658	19	2.2	19	83	8	50	33	0	2	64	1.07
6404467--6404574	51	2.1	51	91	3	182	33	17	22	26	1.96
6404550--6404597	23	2.1	23	92	0	78	35	18	16	29	1.93
6404499--6404647	74	2.0	74	94	0	262	33	16	20	28	1.95
6404592--6404735	44	3.3	44	92	1	227	31	13	23	31	1.94
6422487--6422530	22	2.0	22	90	0	70	47	6	6	38	1.57
6423395--6423428	6	5.7	6	92	0	50	20	0	47	32	1.51
6425271--6425301	3	10.3	3	92	0	53	32	38	0	29	1.57
6429832--6430467	318	2.0	318	98	0	1236	41	16	14	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6453080--6453132	16	3.2	16	89	2	70	62	1	1	33	1.17
6453056--6453116	27	2.3	27	85	0	86	59	1	1	37	1.17
6453079--6453133	17	3.3	17	79	5	58	63	1	1	32	1.15
6453016--6453180	43	4.0	42	74	14	144	60	1	1	35	1.18
6454610--6454777	87	1.9	87	98	0	327	32	7	30	30	1.84
6465432--6465466	6	5.7	6	89	3	52	2	31	0	65	1.07
6484818--6484851	6	5.7	6	100	0	68	50	0	14	35	1.44
6485544--6485573	14	2.1	14	93	0	51	46	0	6	46	1.29
6489801--6489841	21	2.0	21	90	0	64	19	29	21	29	1.98
6493827--6493851	6	4.2	6	100	0	50	52	32	16	0	1.44
6498403--6498443	21	2.0	21	90	0	64	19	29	21	29	1.98
6501661--6501728	33	2.1	33	100	0	136	32	2	19	45	1.65
6501992--6502028	16	2.3	16	90	0	56	59	0	16	24	1.37
6521884--6521925	20	2.1	20	86	0	57	47	0	7	45	1.30
6523941--6523970	11	2.7	11	89	0	51	16	0	23	60	1.36
6534963--6535014	16	3.2	16	94	0	95	25	1	36	36	1.67
6534995--6535085	45	2.0	45	85	2	121	27	6	28	37	1.82
6535250--6535284	18	2.0	17	88	5	52	54	0	0	45	0.99
6535491--6535526	18	2.0	18	88	0	54	55	0	0	44	0.99
6535233--6535854	119	5.2	120	97	1	1142	48	5	2	43	1.40
6535233--6535854	241	2.6	241	96	1	1144	48	5	2	43	1.40
6538867--6538976	33	3.3	33	81	11	136	31	8	17	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6538923--6539037	51	2.3	51	96	3	214	26	6	19	46	1.75
6538973--6539077	33	3.3	33	63	12	92	27	7	18	46	1.76
6539022--6539049	12	2.3	12	100	0	56	21	0	21	57	1.41
6538971--6539088	63	1.9	62	98	1	227	28	6	17	46	1.74
6539155--6539335	86	2.1	86	98	1	355	47	7	4	40	1.52
6542358--6542420	31	2.0	31	93	0	108	36	1	7	53	1.40
6545936--6545976	3	13.7	3	94	0	73	34	2	0	63	1.08
6547438--6547588	71	2.1	71	92	2	250	30	29	16	23	1.96
6547508--6547730	103	2.2	104	92	2	369	31	31	18	17	1.95
6554492--6554543	26	2.0	26	92	0	86	28	34	21	15	1.94
6554504--6554654	72	2.1	71	92	2	250	30	29	15	23	1.96
6554573--6554794	102	2.2	104	90	3	351	31	31	18	18	1.95
6570807--6571051	124	2.0	124	98	0	472	45	15	11	26	1.81
6573522--6573614	41	2.4	39	86	11	138	41	18	12	26	1.86
6573537--6573619	41	2.0	41	100	0	166	38	21	12	27	1.89
6579233--6579266	18	1.9	18	88	5	52	41	2	0	55	1.15
6592762--6592800	3	12.7	3	89	5	60	33	0	0	66	0.92
6596357--6596419	26	2.4	27	78	7	76	42	3	7	46	1.49
6602525--6602560	17	2.1	18	89	5	56	58	5	5	30	1.44
6604827--6604861	12	2.9	12	91	0	52	8	17	17	57	1.64
6608104--6608168	25	2.6	25	80	2	78	30	20	26	23	1.98
6608153--6608200	25	2.0	24	83	4	60	33	22	27	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6609372--6609495	64	1.9	64	83	0	158	37	20	17	23	1.94
6613557--6613590	15	2.2	16	94	5	61	50	11	14	23	1.76
6617124--6617153	3	10.0	3	100	0	60	33	0	0	66	0.92
6617661--6617894	118	2.0	116	88	3	344	44	7	14	33	1.73
6620510--6620566	23	2.5	22	83	8	69	61	3	1	33	1.23
6620525--6620614	11	8.4	11	67	17	55	63	0	2	34	1.07
6620535--6620626	40	2.3	40	87	9	150	65	0	2	32	1.05
6629874--6629923	23	2.2	23	82	10	59	44	0	0	56	0.99
6637834--6637925	33	2.8	32	71	3	76	32	20	28	18	1.96
6639205--6639234	9	3.3	9	90	0	51	26	10	20	43	1.83
6639376--6639436	20	3.2	19	81	6	70	57	4	1	36	1.30
6639376--6639439	19	3.4	19	78	8	69	56	4	1	37	1.30
6639447--6639499	21	2.4	22	75	12	54	62	1	0	35	1.06
6653581--6653615	14	2.4	14	90	4	52	74	5	14	5	1.19
6654242--6654410	84	2.0	84	92	0	284	51	7	15	25	1.70
6658357--6658412	28	2.0	29	82	3	69	53	1	1	42	1.21
6658732--6658770	3	13.0	3	100	0	78	33	0	0	66	0.92
6659125--6659220	39	2.5	39	80	6	108	20	23	28	27	1.99
6664781--6664929	36	4.1	36	92	1	226	42	10	18	28	1.83
6666553--6666581	13	2.1	14	93	6	51	55	6	0	37	1.27
6666552--6666584	14	2.3	15	85	15	52	54	6	0	39	1.25
6667558--6667688	57	2.4	54	81	10	149	34	19	14	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6678436--6678489	27	2.0	27	100	0	108	14	40	18	25	1.89
6685872--6685964	18	5.2	18	85	0	132	29	23	15	32	1.95
6693704--6693762	9	6.3	9	74	14	57	64	3	0	32	1.10
6694081--6694126	23	1.9	25	82	8	60	41	0	6	52	1.27
6696243--6696283	17	2.4	18	80	12	50	53	4	7	34	1.50
6696427--6696459	2	17.0	2	93	6	59	48	0	0	51	1.00
6705910--6706047	59	2.3	59	97	0	258	32	25	15	26	1.96
6708728--6708752	4	6.2	4	100	0	50	76	0	24	0	0.80
6710371--6710410	13	3.0	13	82	7	53	42	12	2	42	1.56
6718274--6718298	7	3.6	7	100	0	50	16	44	12	28	1.83
6722631--6722667	20	1.9	20	94	5	67	43	2	8	45	1.47
6729602--6729631	5	6.0	5	100	0	60	20	0	20	60	1.37
6741068--6741097	11	2.7	11	89	0	51	50	0	3	46	1.18
6743174--6743223	17	2.7	20	78	18	70	10	0	44	46	1.37
6747801--6747850	17	2.7	20	78	18	70	10	0	44	46	1.37
6750075--6750117	13	3.2	13	80	12	52	60	6	0	32	1.23
6750120--6750178	13	4.1	14	71	18	50	49	1	0	49	1.11
6750148--6750177	16	1.9	15	93	6	51	53	0	0	46	1.00
6751307--6751335	3	9.7	3	100	0	58	31	0	34	34	1.58
6755085--6755119	18	2.0	17	94	5	61	57	0	0	42	0.99
6765135--6765194	29	2.1	29	100	0	120	33	13	20	33	1.91
6766350--6766394	19	2.3	19	84	3	54	57	2	4	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6767962--6768023	30	2.0	30	84	9	81	30	4	9	54	1.54
6768206--6768267	31	2.1	30	87	6	90	51	12	0	35	1.40
6768206--6768268	29	2.2	28	83	11	74	52	12	0	34	1.40
6773832--6773859	14	2.0	14	100	0	56	7	28	0	64	1.20
6773812--6773856	19	2.5	18	83	16	58	6	26	0	66	1.16
6773812--6773875	17	3.7	18	74	19	55	7	29	1	60	1.34
6776861--6776906	18	2.6	18	86	3	58	43	0	2	54	1.12
6777433--6777489	19	2.9	20	78	5	62	64	3	0	31	1.10
6779635--6779664	14	2.1	14	93	0	51	13	23	0	63	1.29
6785099--6785259	51	3.2	51	93	0	270	31	13	23	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199