genome.fa.s18.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  169  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54791013--54791078	30	2.2	30	82	12	82	24	15	15	45	1.84
54792677--54792717	22	2.0	22	85	9	59	14	0	31	53	1.41
54792804--54792843	18	2.2	18	86	13	55	12	17	7	62	1.52
54793683--54793716	15	2.3	15	94	0	59	47	0	8	44	1.34
54793683--54793722	15	2.7	15	88	3	55	42	0	10	47	1.37
54798383--54798536	36	4.0	36	81	14	191	36	14	20	28	1.92
54798423--54798579	45	3.8	44	79	16	190	34	15	21	28	1.94
54798347--54798562	81	2.7	82	96	2	400	35	14	20	29	1.93
54806845--54806951	43	2.5	43	90	0	160	27	16	28	27	1.97
54807993--54808127	43	3.1	43	79	4	173	26	17	24	31	1.97
54818548--54818602	25	2.2	24	93	3	92	47	3	20	29	1.67
54830100--54830138	12	3.2	12	100	0	78	61	7	0	30	1.24
54839465--54839505	21	2.0	21	85	9	57	51	4	0	43	1.23
54840558--54840693	68	2.0	68	94	0	236	35	19	16	28	1.94
54842945--54842984	18	2.2	18	86	13	55	12	17	7	62	1.52
54850810--54851613	44	17.8	44	66	16	238	31	18	21	28	1.97
54850855--54851564	181	3.9	181	84	4	859	31	17	21	29	1.96
54851037--54851344	45	6.9	44	69	14	157	31	16	22	29	1.96
54850855--54851422	89	6.3	91	69	16	360	32	17	20	29	1.96
54851398--54851470	37	2.0	37	86	5	103	24	20	27	27	1.99
54851435--54852304	143	6.1	143	88	0	1256	29	20	21	27	1.98
54860898--54861094	97	2.0	97	100	0	394	28	14	17	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54867931--54868014	38	2.2	40	89	4	127	28	7	20	44	1.78
54870069--54870137	35	2.0	35	91	2	113	63	4	13	18	1.45
54870074--54870147	35	2.1	34	87	7	105	64	5	12	17	1.44
54870638--54870715	39	2.0	40	87	12	117	21	25	32	20	1.98
54875252--54875299	25	1.9	25	91	0	78	52	6	8	33	1.57
54875651--54875687	5	7.4	5	87	0	56	21	18	35	24	1.96
54875926--54875972	24	2.0	24	86	0	67	44	0	4	51	1.21
54875951--54876002	20	2.7	20	85	11	72	40	0	5	53	1.25
54876084--54876124	9	4.6	9	85	11	57	34	2	12	51	1.52
54884643--54884744	50	2.0	51	90	5	163	35	10	15	38	1.83
54887181--54887209	5	5.8	5	100	0	58	17	62	0	20	1.33
54894148--54894255	23	4.8	23	74	11	80	29	16	13	39	1.88
54904148--54904188	9	4.1	10	81	18	50	65	2	0	31	1.05
54904464--54904507	22	2.0	22	82	8	54	43	2	0	54	1.12
54906772--54906817	16	2.9	16	100	0	92	30	0	23	45	1.53
54912432--54912456	4	6.2	4	100	0	50	24	0	0	76	0.80
54922467--54922509	22	2.0	22	86	8	63	53	4	0	41	1.21
54923723--54923750	6	4.7	6	100	0	56	67	0	0	32	0.91
54924403--54924483	29	2.7	30	82	5	101	53	13	2	30	1.53
54926665--54926721	5	10.6	5	78	14	60	19	19	0	61	1.35
54926663--54926711	16	2.9	17	82	14	59	18	18	0	63	1.32
54926658--54926704	22	2.1	22	92	0	76	14	14	0	70	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54926665--54926721	27	2.1	27	90	6	89	19	19	0	61	1.35
54926665--54926721	11	5.3	10	80	14	60	19	19	0	61	1.35
54926668--54926721	22	2.5	22	87	0	72	20	20	0	59	1.38
54926757--54926802	18	2.8	16	86	6	65	19	13	4	63	1.46
54926881--54926936	19	2.8	19	78	19	60	25	8	0	66	1.21
54927269--54927346	5	15.0	5	73	15	61	19	19	1	60	1.44
54927269--54927341	22	3.5	22	81	11	98	19	19	1	60	1.44
54927336--54927591	48	5.3	47	85	6	345	24	13	0	62	1.31
54927337--54927591	95	2.7	95	90	3	388	24	13	0	61	1.32
54927590--54927637	21	2.3	20	79	10	53	22	14	0	62	1.32
54930917--54931222	109	2.8	108	85	4	373	34	20	16	27	1.95
54930925--54931286	109	3.3	108	80	7	279	35	20	15	28	1.94
54931615--54931639	7	3.6	7	100	0	50	68	0	0	32	0.90
54934852--54934877	13	2.0	13	100	0	52	61	7	0	30	1.24
54938735--54938767	17	2.0	17	94	5	59	60	0	0	39	0.97
54941220--54941311	36	2.6	34	77	12	89	58	5	4	31	1.40
54943165--54943203	20	2.1	19	90	9	62	56	5	5	33	1.43
54943641--54943701	3	20.3	3	83	6	79	62	1	4	31	1.26
54945337--54945479	44	3.2	44	74	11	114	24	20	20	34	1.97
54945629--54946233	88	6.9	88	92	2	893	24	22	22	29	1.99
54945629--54946233	263	2.3	262	89	3	907	24	22	22	29	1.99
54945629--54946233	175	3.5	176	91	2	902	24	22	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54950984--54951032	19	2.5	20	80	6	57	40	12	20	26	1.87
54953311--54953368	19	3.0	19	85	7	64	63	5	0	31	1.16
54953346--54953417	36	2.0	37	83	8	94	54	1	9	34	1.42
54953551--54953623	3	24.3	3	86	5	103	63	1	4	31	1.22
54957718--54957752	16	2.1	16	94	5	61	80	0	20	0	0.72
54959652--54959690	13	2.7	15	80	11	55	38	0	5	56	1.22
54959737--54959763	14	1.9	14	100	0	54	59	0	3	37	1.15
54960136--54960189	25	2.2	25	86	6	74	42	0	1	55	1.10
54960362--54960409	19	2.6	18	77	6	51	75	2	2	20	1.02
54965085--54965116	8	4.0	8	100	0	64	87	0	0	12	0.54
54965574--54965634	17	3.5	18	76	12	65	60	1	1	36	1.16
54968187--54968238	26	2.0	26	85	7	70	46	5	3	44	1.45
54968394--54968432	6	6.3	6	82	5	51	38	2	0	58	1.12
54976454--54976513	19	3.1	19	78	4	75	6	18	25	50	1.71
54978236--54978356	64	1.9	63	83	5	154	23	31	22	22	1.98
54979521--54979759	64	3.7	64	96	0	424	18	30	22	28	1.97
54988210--54988260	21	2.4	21	96	0	93	47	5	17	29	1.71
54991706--54991744	6	6.3	6	86	13	53	82	0	17	0	0.68
54991706--54991744	13	3.2	12	89	10	53	82	0	17	0	0.68
54992119--54992330	64	3.3	64	85	0	280	29	27	19	24	1.98
54994521--54994553	14	2.4	14	94	0	57	36	0	3	60	1.12
54995020--54995061	21	2.0	21	95	0	75	50	0	21	28	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54995331--54995355	3	8.3	3	100	0	50	36	0	0	64	0.94
54996457--54997592	566	2.0	566	100	0	2272	33	12	19	35	1.89
55003736--55004087	162	2.2	162	93	0	605	27	20	16	35	1.94
55007712--55007761	16	3.2	16	82	2	57	32	6	0	62	1.20
55012226--55012598	162	2.3	162	91	1	586	28	20	17	34	1.95
55020109--55020164	21	2.5	22	85	8	78	42	0	12	44	1.42
55020109--55020155	7	6.6	7	92	2	76	42	0	14	42	1.46
55026510--55026644	43	3.1	43	82	4	139	28	21	24	25	1.99
55026531--55026727	43	4.6	42	76	5	132	34	24	17	24	1.96
55032121--55032166	24	1.9	24	82	8	58	17	6	4	71	1.24
55032494--55032550	22	2.6	21	75	8	60	31	42	1	24	1.65
55032535--55032575	21	2.0	20	85	4	55	39	41	0	19	1.52
55032741--55032788	25	1.9	25	86	0	69	62	2	0	35	1.07
55032829--55032902	30	2.5	30	80	10	89	33	36	1	28	1.66
55032860--55032928	21	3.3	21	80	13	63	33	42	2	21	1.68
55033056--55033082	7	3.9	7	100	0	54	29	55	0	14	1.40
55033823--55033978	41	3.8	41	90	0	251	29	25	23	21	1.99
55034022--55034125	37	2.7	39	79	5	124	22	25	23	29	1.99
55034912--55034974	25	2.4	25	82	15	83	58	3	1	36	1.23
55036538--55036580	22	2.0	22	86	9	61	60	2	2	34	1.22
55037397--55037451	23	2.4	23	93	0	92	21	7	29	41	1.80
55038842--55039188	162	2.1	162	95	0	622	26	21	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55048479--55048503	3	8.3	3	100	0	50	68	0	0	32	0.90
55048910--55048973	23	2.8	23	85	0	74	39	18	20	21	1.93
55049482--55049526	5	9.0	5	90	0	72	37	2	2	57	1.23
55050668--55050780	23	5.0	23	84	5	133	18	21	23	36	1.95
55052221--55052256	18	1.9	18	88	5	54	50	8	0	41	1.33
55053953--55053998	18	2.5	18	86	10	58	19	0	4	76	0.96
55053964--55053997	12	2.8	12	90	4	50	20	0	2	76	0.92
55056025--55056074	25	2.0	24	81	11	57	26	0	8	66	1.19
55057048--55057101	20	2.7	19	83	11	63	29	11	22	37	1.89
55057257--55057292	17	2.1	18	89	5	56	47	13	5	33	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199