genome.fa.s18.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  133  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44488672--44488869	50	3.8	51	79	4	193	22	27	21	27	1.99
44493478--44493536	17	3.6	17	68	25	54	15	44	27	13	1.84
44497265--44497478	27	7.9	27	86	1	196	38	19	20	21	1.93
44497277--44497479	81	2.5	81	82	1	219	38	18	20	22	1.93
44497506--44497570	24	2.7	24	90	0	94	23	7	23	46	1.78
44497651--44497706	27	2.1	27	83	12	71	21	25	21	32	1.98
44497698--44497751	26	2.1	26	85	0	72	18	20	24	37	1.94
44497757--44497953	61	3.1	61	79	6	207	21	19	19	39	1.93
44497786--44497911	29	4.1	29	77	14	103	23	19	19	38	1.94
44497757--44497953	32	6.3	32	78	8	181	21	19	19	39	1.93
44497945--44498009	22	3.0	21	75	4	58	16	20	18	44	1.87
44501630--44501722	30	3.1	29	85	3	123	23	26	13	35	1.93
44507707--44507769	29	2.3	27	84	10	76	20	23	9	46	1.80
44507723--44507810	29	3.0	29	88	3	124	20	25	14	39	1.90
44519397--44519433	17	2.1	19	85	10	51	0	32	0	67	0.91
44521805--44521885	26	3.1	26	85	0	117	37	20	19	22	1.95
44522018--44522123	27	3.9	27	82	4	79	18	17	23	39	1.92
44522029--44522124	27	3.6	27	88	0	129	16	19	21	41	1.90
44522076--44522150	27	2.8	27	82	8	73	25	20	13	41	1.88
44522027--44522150	54	2.3	54	79	5	133	20	18	19	41	1.91
44534809--44534894	42	2.0	43	84	2	111	25	12	25	36	1.92
44535497--44535669	23	7.1	25	63	20	80	26	10	15	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44535476--44535700	97	2.3	97	85	5	314	26	12	15	46	1.81
44535476--44535700	48	4.7	48	86	5	301	26	12	15	46	1.81
44542737--44542822	42	2.0	43	84	2	111	25	12	25	36	1.92
44543398--44543581	48	3.8	48	86	5	253	25	14	15	45	1.83
44543398--44543581	98	1.9	98	91	0	305	25	14	15	45	1.83
44543767--44543831	32	2.2	29	84	13	80	23	10	10	55	1.65
44544307--44544358	17	3.4	17	68	29	53	25	3	17	53	1.60
44544313--44544355	13	3.0	15	73	13	54	25	4	18	51	1.66
44556613--44556667	26	2.1	26	96	0	83	47	21	10	20	1.80
44562581--44562637	28	2.0	28	100	0	114	40	21	10	28	1.86
44563236--44563277	20	2.1	20	86	0	57	47	0	7	45	1.30
44564646--44564679	15	2.2	16	89	5	52	35	2	17	44	1.64
44567630--44567672	20	2.2	20	86	0	59	48	0	6	44	1.29
44569078--44569114	18	2.1	18	100	0	74	56	21	10	10	1.64
44572712--44572833	59	2.1	59	98	0	235	27	13	21	38	1.90
44574515--44574541	12	2.2	12	100	0	54	22	25	11	40	1.87
44579810--44579839	15	2.1	15	93	6	53	30	0	0	70	0.88
44579821--44579867	9	5.1	9	78	14	51	31	2	0	65	1.04
44579790--44579872	43	1.9	42	83	13	107	31	1	1	66	1.07
44580087--44580210	61	2.0	61	89	3	187	42	9	9	37	1.71
44580555--44580596	23	1.9	21	90	9	66	52	0	4	42	1.22
44580854--44580913	10	6.2	10	83	13	63	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44580863--44580902	9	4.4	9	87	12	64	40	0	0	60	0.97
44580834--44580912	38	2.1	37	83	6	97	35	0	2	62	1.09
44580854--44580903	18	2.6	19	84	9	75	40	0	0	60	0.97
44582958--44583002	12	3.8	12	79	2	56	40	0	0	60	0.97
44584102--44584126	7	3.6	7	100	0	50	28	0	12	60	1.32
44586248--44586351	28	3.7	29	83	6	133	29	10	25	33	1.90
44587076--44587134	23	2.6	23	81	7	59	28	20	15	35	1.93
44587098--44587589	46	10.4	45	69	11	182	26	12	18	42	1.86
44587146--44587678	94	5.6	94	93	0	868	26	12	18	42	1.86
44593963--44594066	28	3.7	28	88	1	145	29	11	25	32	1.91
44594789--44594847	23	2.6	23	81	7	59	28	20	15	35	1.93
44594811--44595302	46	10.4	45	68	11	191	26	12	19	42	1.87
44594929--44595062	23	5.6	24	70	21	63	24	13	18	43	1.86
44594859--44595391	94	5.6	94	94	0	904	26	12	19	42	1.86
44595864--44595981	25	5.0	24	75	12	127	40	0	13	45	1.43
44595854--44595988	70	1.9	70	98	0	261	38	0	12	48	1.41
44595984--44596020	9	4.2	9	93	3	58	29	0	8	62	1.24
44596051--44597317	23	57.2	22	76	14	950	46	25	0	26	1.57
44596047--44597316	44	28.7	44	84	6	1130	46	26	0	26	1.57
44596050--44597306	67	18.9	68	79	12	1075	46	26	0	26	1.57
44597311--44597552	115	2.1	115	90	1	387	40	9	5	45	1.59
44600165--44600233	32	2.2	32	91	0	111	47	33	8	10	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44601505--44601551	25	1.9	24	86	4	67	29	0	6	63	1.19
44601504--44601559	25	2.2	25	78	6	60	30	1	5	62	1.28
44603131--44603166	19	1.9	19	88	5	56	52	5	5	36	1.48
44603844--44603968	35	3.6	35	84	0	169	19	12	32	35	1.89
44608502--44608579	39	2.0	39	97	0	147	12	19	20	47	1.82
44610698--44610741	23	1.9	23	90	0	70	45	6	0	47	1.29
44611677--44611703	6	4.5	6	100	0	54	66	0	0	33	0.92
44612402--44612468	34	1.9	35	84	3	91	44	13	8	32	1.75
44612882--44612954	29	2.5	30	75	6	78	38	2	4	54	1.34
44612905--44612961	29	2.0	29	86	10	82	29	3	5	61	1.35
44615201--44615258	28	2.1	28	100	0	116	3	13	22	60	1.49
44619697--44619721	13	1.9	13	100	0	50	48	16	0	36	1.46
44634462--44634503	20	2.0	21	90	4	68	30	16	28	23	1.96
44635641--44635685	22	2.0	23	83	8	58	4	26	2	66	1.22
44635680--44635722	20	2.2	20	91	4	70	11	18	2	67	1.32
44639179--44639220	20	2.0	21	86	4	59	30	14	30	23	1.94
44641796--44641837	20	2.0	21	86	4	59	30	14	30	23	1.94
44644409--44644450	20	2.0	21	86	4	59	30	14	30	23	1.94
44647024--44647063	20	2.0	21	90	5	64	32	17	25	25	1.97
44650320--44650382	23	2.7	22	73	23	58	11	22	1	65	1.33
44662006--44662145	40	3.5	39	80	8	149	38	20	19	21	1.93
44662208--44662395	82	2.3	82	85	1	234	21	22	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44662208--44662431	41	5.5	40	80	7	202	21	21	22	33	1.97
44663517--44663576	7	8.7	7	81	3	59	16	1	40	41	1.58
44663973--44664032	30	2.0	31	87	9	88	41	1	1	55	1.20
44668253--44668343	43	2.1	43	85	2	121	34	10	10	43	1.75
44668610--44668839	43	5.3	43	85	3	286	19	15	32	32	1.93
44672731--44672954	79	2.8	78	83	8	272	24	27	22	25	2.00
44672731--44672954	40	5.7	40	86	6	271	24	27	22	25	2.00
44681068--44681796	115	6.4	115	84	3	859	22	20	27	29	1.99
44681068--44681786	229	3.1	230	84	4	861	21	21	27	29	1.99
44682458--44682649	103	1.9	100	86	7	271	29	0	28	42	1.56
44682609--44682655	14	3.4	14	77	14	53	17	0	42	40	1.49
44682534--44682772	83	2.9	82	85	6	322	29	1	25	43	1.62
44682899--44683115	84	2.6	85	82	7	232	30	17	19	32	1.95
44682959--44683119	84	1.9	85	88	3	245	27	17	21	33	1.96
44682964--44683138	85	2.1	84	83	5	219	27	17	21	34	1.95
44683418--44683457	20	2.0	20	95	0	71	22	5	17	55	1.61
44683509--44683700	105	1.8	106	85	4	273	27	17	20	34	1.95
44686282--44686803	36	14.5	36	83	5	538	50	14	1	33	1.54
44686307--44686803	27	17.7	27	85	7	548	50	14	2	32	1.55
44686282--44686787	63	8.0	64	82	9	612	50	14	1	33	1.52
44692344--44692377	15	2.3	15	100	0	68	47	14	26	11	1.79
44692455--44692514	21	2.9	21	82	9	77	30	16	48	5	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44692827--44692940	41	2.7	42	82	6	151	37	19	19	23	1.94
44693010--44693052	21	2.0	21	86	0	59	46	25	16	11	1.80
44694712--44694743	15	2.1	15	94	0	55	62	3	6	28	1.34
44704867--44704909	21	2.0	21	100	0	86	44	27	4	23	1.73
44714423--44714456	16	2.1	16	88	0	50	35	20	2	41	1.68
44720624--44720808	101	1.8	102	90	3	302	23	17	28	30	1.97
44720621--44720806	51	3.7	49	80	6	196	23	17	28	30	1.97
44720812--44720910	46	2.2	43	81	12	110	24	18	25	32	1.97
44724020--44724092	33	2.2	33	81	11	87	23	24	10	41	1.86
44724794--44724840	16	2.9	16	72	12	51	44	0	12	42	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199