genome.fa.s18.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  173  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55754472--55755719	133	9.4	133	94	3	2103	30	0	22	46	1.52
55754682--55754763	22	3.8	21	81	9	94	26	0	25	47	1.52
55754684--55754771	44	2.0	44	91	8	144	30	0	21	47	1.51
55754682--55754805	23	5.3	22	76	16	108	29	0	24	45	1.53
55754981--55755015	17	2.0	18	88	5	54	31	0	20	48	1.50
55755114--55755148	17	2.0	18	88	5	54	31	0	20	48	1.50
55755247--55755281	17	2.0	18	88	5	54	31	0	20	48	1.50
55755380--55755414	17	2.0	18	88	5	54	31	0	20	48	1.50
55755512--55755545	17	2.1	17	94	5	61	35	0	17	47	1.48
55755642--55755685	22	2.0	22	90	0	70	36	0	18	45	1.49
55755713--55755801	23	3.8	23	81	8	117	26	1	25	46	1.60
55758170--55758211	22	1.9	22	90	0	66	33	0	33	33	1.58
55758161--55758263	52	2.0	51	83	9	129	34	0	32	33	1.58
55758213--55758302	22	4.1	22	78	8	94	44	0	25	30	1.54
55766299--55766512	105	2.0	105	81	1	250	28	28	14	28	1.95
55768221--55768275	21	2.6	21	88	0	74	27	7	34	30	1.84
55768771--55768899	68	1.9	68	93	0	222	31	35	9	24	1.87
55769571--55769609	13	3.0	13	85	10	53	41	0	0	58	0.98
55771641--55771711	37	1.9	36	83	8	90	42	0	7	50	1.29
55773772--55774000	105	2.2	105	82	1	262	29	26	14	29	1.95
55778616--55778738	39	3.2	39	94	2	212	61	0	3	34	1.12
55780605--55780634	13	2.3	13	100	0	60	33	6	23	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55784568--55784766	36	5.3	36	82	12	238	37	13	20	29	1.90
55784532--55784722	82	2.3	82	95	0	337	37	12	21	29	1.89
55785618--55786273	51	12.9	51	76	6	584	29	25	14	30	1.95
55785619--55786273	102	6.4	102	92	1	1003	29	25	14	30	1.95
55787206--55787238	13	2.5	13	100	0	66	39	15	15	30	1.88
55788807--55788933	49	2.6	49	81	4	152	33	25	14	26	1.95
55791056--55791813	51	14.9	51	75	6	648	29	25	14	30	1.95
55791057--55791813	102	7.4	102	93	1	1216	29	26	14	30	1.95
55791920--55791944	11	2.3	11	100	0	50	8	16	0	76	1.02
55794570--55794598	6	4.8	6	100	0	58	68	0	31	0	0.89
55795676--55795780	23	4.8	23	75	9	94	21	18	20	39	1.93
55795729--55795778	21	2.5	20	90	3	73	18	18	22	42	1.90
55796184--55796220	19	1.9	19	88	0	56	51	2	18	27	1.60
55801508--55801768	105	2.5	105	90	0	387	28	26	14	30	1.95
55801527--55801850	105	3.1	105	84	0	326	29	26	14	29	1.95
55810304--55810328	11	2.3	11	100	0	50	32	0	0	68	0.90
55815720--55815948	105	2.2	105	84	1	280	28	26	15	29	1.96
55819264--55819298	3	11.7	3	100	0	70	65	0	0	34	0.93
55825163--55825215	7	7.3	7	85	8	61	47	30	0	22	1.52
55825156--55825215	14	4.2	14	79	10	68	46	31	0	21	1.52
55825242--55825419	21	8.2	22	64	13	82	49	29	0	20	1.53
55825237--55825418	65	2.8	63	81	6	188	48	30	0	20	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55825286--55825427	43	3.3	40	80	11	140	48	32	0	19	1.49
55825378--55825411	15	2.1	16	89	10	52	50	32	0	17	1.47
55825241--55825440	22	9.2	22	73	15	150	49	29	0	20	1.53
55825325--55825497	65	2.6	66	78	13	162	49	28	0	21	1.50
55825316--55825441	43	2.9	42	80	9	146	50	30	0	19	1.48
55825503--55825886	114	3.4	114	97	0	705	39	10	8	41	1.69
55828910--55829186	125	2.2	124	89	3	423	30	23	19	27	1.98
55829436--55829471	2	18.0	2	88	0	54	44	0	0	55	0.99
55832183--55832235	21	2.5	21	93	0	88	30	39	9	20	1.84
55836692--55836758	33	2.0	33	100	0	134	40	5	29	23	1.79
55838393--55838433	20	2.0	20	95	0	73	21	9	12	56	1.65
55839500--55839576	18	4.3	18	74	0	55	25	16	11	45	1.82
55839500--55839560	12	5.1	12	77	0	59	22	21	11	44	1.84
55839509--55839570	12	5.2	12	84	0	61	25	17	11	45	1.82
55839562--55839654	6	15.5	6	100	0	186	33	0	16	50	1.45
55841483--55841515	3	11.0	3	100	0	66	66	0	0	33	0.92
55841579--55841672	40	2.3	41	76	7	104	54	1	5	39	1.30
55841881--55841930	19	2.5	21	80	6	59	44	4	10	42	1.56
55843450--55843691	128	1.9	127	81	5	292	25	19	23	31	1.98
55843655--55843911	50	5.2	50	66	12	127	24	21	21	32	1.98
55843655--55843926	99	2.7	99	84	5	343	23	23	20	31	1.98
55843926--55844312	132	2.9	132	88	1	580	26	24	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55844087--55844286	44	4.5	44	71	18	164	27	27	18	27	1.98
55843925--55844288	88	4.1	89	67	16	220	26	24	18	29	1.98
55844304--55844704	89	4.5	89	86	0	550	24	23	22	29	1.99
55844304--55844691	44	8.7	44	74	7	291	24	23	23	28	2.00
55846011--55846063	10	5.2	10	88	4	79	11	7	0	81	0.88
55845983--55846051	14	4.9	13	73	15	57	4	15	0	79	0.88
55845983--55846049	27	2.4	27	80	9	73	4	16	0	79	0.90
55845984--55846051	20	3.6	19	81	11	77	4	16	0	79	0.89
55850886--55850981	42	2.3	42	80	3	124	55	1	4	39	1.26
55854671--55854919	50	4.9	49	84	5	273	20	28	24	26	1.99
55854670--55854919	100	2.4	104	88	5	364	20	28	24	26	1.99
55855013--55855044	13	2.5	13	94	0	55	56	12	0	31	1.37
55855256--55855313	30	1.9	30	89	0	89	31	24	3	41	1.71
55857394--55857533	70	2.0	70	98	0	271	34	13	30	22	1.92
55860808--55861251	105	4.2	105	90	0	602	28	25	14	31	1.95
55862406--55862437	15	2.1	15	94	0	55	34	0	3	62	1.11
55863010--55863079	37	1.9	37	88	2	106	60	0	1	38	1.06
55867018--55867135	58	2.0	58	96	0	218	27	26	20	26	1.99
55869306--55869547	105	2.3	105	91	0	376	30	28	14	26	1.95
55869329--55869635	105	2.9	105	85	2	350	28	27	14	29	1.95
55872958--55873074	43	2.7	43	79	6	130	23	12	26	36	1.91
55878857--55878888	15	2.2	15	94	5	57	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55882177--55882207	3	10.3	3	100	0	62	32	0	0	67	0.91
55888255--55888346	46	2.0	46	89	4	143	28	4	28	39	1.76
55888255--55888368	46	2.6	44	81	13	130	31	4	28	35	1.77
55888510--55888543	17	2.0	17	100	0	68	58	0	0	41	0.98
55888577--55888616	20	2.0	21	85	5	55	65	2	2	30	1.19
55888490--55888979	117	4.3	117	92	3	759	52	3	1	42	1.30
55888627--55888660	17	2.0	17	100	0	68	58	0	0	41	0.98
55888744--55888777	17	2.0	17	100	0	68	58	0	0	41	0.98
55888939--55889002	32	2.0	32	81	0	74	48	3	0	48	1.17
55890909--55890933	10	2.5	10	100	0	50	44	28	8	20	1.79
55891070--55891120	26	2.0	26	96	0	93	47	23	11	17	1.81
55892060--55892105	23	2.0	23	83	8	58	52	2	8	36	1.45
55896060--55896132	16	4.5	17	75	16	59	52	12	8	27	1.67
55900003--55900032	3	10.0	3	92	0	51	0	3	33	63	1.11
55900490--55900533	12	3.7	12	84	0	61	11	9	40	38	1.73
55902762--55902870	44	2.6	41	74	17	98	44	0	4	51	1.22
55902708--55902766	25	2.2	28	71	22	54	44	0	1	54	1.10
55902708--55902954	109	2.2	109	85	10	313	44	0	3	51	1.23
55902914--55902947	17	2.0	17	100	0	68	41	0	0	58	0.98
55903094--55903195	44	2.5	39	83	14	150	36	32	3	27	1.75
55903109--55903244	44	3.0	44	93	2	218	39	28	4	27	1.76
55905736--55905977	105	2.3	105	91	0	403	28	28	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55910756--55911149	114	3.5	113	80	6	472	33	17	21	27	1.95
55910756--55911203	114	3.9	113	79	5	456	34	17	21	27	1.95
55910761--55911203	227	2.0	227	90	2	703	33	17	21	27	1.96
55910756--55911244	113	4.3	111	75	8	396	34	17	21	26	1.95
55914110--55914155	23	2.0	23	83	8	58	17	4	17	60	1.51
55914265--55914352	44	2.0	46	88	4	135	21	6	28	43	1.78
55914311--55914707	217	1.8	216	82	8	507	17	15	17	48	1.81
55915837--55915942	32	3.4	30	76	15	101	53	13	0	32	1.46
55915873--55915942	20	3.5	21	77	11	67	55	12	0	31	1.38
55915837--55915942	29	3.4	29	79	15	115	53	13	0	32	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199