genome.fa.s18.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  180  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57516471--57516503	11	2.9	12	86	13	52	66	0	0	33	0.92
57520150--57520198	19	2.6	18	78	15	55	67	2	2	28	1.13
57520109--57520190	10	8.8	9	74	11	58	67	2	2	28	1.16
57520612--57520683	28	2.5	28	78	17	78	34	2	4	58	1.32
57521649--57521691	17	2.4	18	81	14	54	23	9	6	60	1.51
57539684--57539729	21	2.2	21	96	0	83	21	13	6	58	1.57
57540970--57541033	30	2.2	29	80	8	76	35	7	4	51	1.52
57551884--57551980	33	2.8	35	72	20	89	43	3	2	51	1.29
57552163--57552228	13	5.1	13	77	0	69	37	21	6	34	1.78
57552426--57552477	22	2.4	22	83	0	68	19	26	19	34	1.95
57558336--57558363	12	2.3	12	100	0	56	32	14	0	53	1.41
57563320--57563364	18	2.5	19	76	23	53	80	0	20	0	0.72
57563320--57563365	16	2.8	17	84	15	69	78	0	21	0	0.76
57563326--57563363	14	2.7	14	80	15	51	78	0	21	0	0.74
57571206--57571263	30	1.9	30	89	0	89	18	39	29	12	1.87
57572735--57572786	21	2.6	20	77	14	54	19	5	7	67	1.36
57574631--57574663	10	3.0	11	86	13	50	54	6	3	36	1.41
57575196--57575273	41	1.9	41	89	0	120	39	17	25	16	1.91
57577884--57577934	26	2.0	26	96	0	93	11	13	35	39	1.82
57582174--57582206	15	2.2	15	100	0	66	57	6	36	0	1.23
57588262--57588303	19	2.5	17	79	20	52	57	0	0	42	0.99
57593576--57593624	24	2.0	24	92	0	80	32	16	4	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57594027--57594085	24	2.4	23	79	17	66	71	1	1	25	1.05
57594029--57594083	25	2.2	25	84	12	69	74	1	1	21	1.01
57601969--57602086	44	2.7	44	93	2	193	50	10	23	15	1.74
57604183--57604236	11	4.7	11	75	8	54	48	1	11	38	1.50
57606699--57606731	15	2.2	15	89	10	50	72	0	0	27	0.85
57606967--57607020	6	9.3	6	82	6	51	68	1	1	27	1.10
57606967--57607020	9	6.2	9	75	14	51	68	1	1	27	1.10
57611356--57611397	18	2.3	19	87	4	59	71	7	16	4	1.26
57613720--57613797	38	2.1	38	97	0	147	32	6	20	41	1.78
57615205--57615272	31	2.4	28	79	15	79	52	17	2	26	1.58
57616281--57616331	20	2.6	19	77	17	52	19	3	7	68	1.30
57620925--57620996	28	2.5	28	84	4	90	25	13	12	48	1.78
57635175--57635207	12	2.7	13	81	18	52	69	0	0	30	0.88
57635851--57635885	16	2.2	16	89	0	52	80	5	0	14	0.89
57636648--57636803	50	3.1	50	88	3	199	27	17	22	32	1.97
57636990--57637791	129	6.2	129	93	0	1361	26	22	21	29	1.99
57636799--57637744	85	11.0	85	70	12	461	27	21	21	29	1.99
57638845--57638891	21	2.2	21	88	7	69	23	34	12	29	1.92
57638973--57639015	7	6.1	7	82	15	54	13	13	0	72	1.13
57638982--57639021	7	5.2	8	85	14	50	12	12	0	75	1.06
57638973--57639021	22	2.2	22	86	13	66	14	14	0	71	1.15
57638973--57639021	15	3.4	14	83	8	62	14	14	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57638973--57639030	15	4.0	14	77	20	57	12	13	0	74	1.08
57638973--57639031	22	2.7	21	81	7	64	11	13	0	74	1.07
57639827--57639857	6	5.3	6	92	7	55	0	12	0	87	0.55
57639824--57639857	11	3.0	11	91	8	59	0	11	0	88	0.52
57639827--57639867	17	2.4	17	87	4	55	0	17	0	82	0.66
57639892--57639921	10	3.0	10	100	0	60	10	0	10	80	0.92
57639989--57640015	13	2.1	13	100	0	54	14	37	0	48	1.45
57641774--57641971	99	2.0	99	98	2	380	22	23	14	40	1.90
57644173--57644207	12	2.9	12	86	0	52	62	0	2	34	1.10
57644333--57644369	10	4.2	9	80	19	51	62	0	0	37	0.96
57644334--57644369	15	2.4	15	90	9	56	63	0	0	36	0.94
57654365--57654398	17	2.0	17	94	0	59	44	50	0	5	1.26
57658995--57659028	17	2.0	17	94	0	59	44	50	0	5	1.26
57660728--57660829	48	2.1	48	100	0	204	35	1	26	36	1.68
57664474--57664539	26	2.5	26	100	0	132	43	7	0	48	1.31
57665742--57665768	12	2.2	12	100	0	54	22	29	18	29	1.97
57666795--57666824	4	7.5	4	92	0	51	73	0	3	23	0.98
57668362--57668679	42	7.7	41	85	8	441	22	20	25	31	1.98
57668365--57668681	82	3.9	82	95	0	562	22	20	25	31	1.98
57680942--57680971	4	7.5	4	92	0	51	73	0	3	23	0.98
57681988--57682026	15	2.5	15	83	4	51	2	0	15	82	0.79
57689293--57689319	12	2.2	12	100	0	54	22	29	18	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57691775--57691812	20	1.9	20	100	0	76	26	15	15	42	1.87
57692219--57692265	25	1.9	25	83	12	62	72	0	12	14	1.13
57692490--57692542	21	2.5	21	84	0	70	26	33	11	28	1.91
57693978--57694010	16	2.1	16	94	0	57	33	12	6	48	1.65
57698804--57698877	29	2.5	29	82	4	85	25	13	13	47	1.79
57699436--57699503	30	2.3	29	84	2	82	50	14	14	20	1.78
57711605--57711722	44	2.7	44	92	2	184	53	10	22	14	1.70
57712251--57712293	20	2.2	19	83	8	50	60	0	6	32	1.23
57720254--57720366	55	2.1	55	100	0	226	44	8	1	45	1.45
57720999--57721037	17	2.4	17	87	12	55	66	5	5	23	1.32
57721898--57721973	19	3.8	18	80	14	71	73	0	2	23	0.95
57722225--57722259	17	2.0	18	94	5	63	25	0	0	74	0.82
57722527--57722587	20	3.2	19	76	17	54	26	3	3	67	1.22
57723513--57723567	21	2.6	21	91	0	83	32	34	7	25	1.83
57727062--57727124	30	2.1	30	93	0	108	57	14	3	25	1.52
57730401--57730444	21	2.1	21	83	8	54	68	0	2	29	1.02
57733910--57733959	16	3.1	16	80	11	57	72	2	0	26	0.96
57737802--57737870	21	3.2	21	73	19	61	26	2	4	66	1.24
57752721--57752762	20	2.0	20	90	4	66	66	2	4	26	1.23
57753177--57753219	22	2.0	22	90	4	70	69	0	4	25	1.07
57753906--57753948	21	2.0	21	100	0	86	9	46	11	32	1.72
57759251--57759284	16	2.1	16	88	0	50	17	11	17	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57762585--57762658	29	2.5	29	82	4	85	25	13	13	47	1.79
57763950--57763995	21	2.1	22	92	4	76	17	10	6	65	1.45
57763950--57764002	21	2.5	21	87	3	61	15	15	7	62	1.53
57766843--57766904	29	2.3	26	81	10	70	51	1	6	40	1.37
57770041--57770088	23	2.0	24	92	4	80	35	16	4	43	1.67
57770225--57770258	17	1.9	17	88	5	50	52	8	2	35	1.47
57770447--57770496	24	2.1	24	100	0	100	26	18	8	48	1.75
57770528--57770593	28	2.5	26	86	13	84	71	4	0	24	1.05
57771757--57771804	25	2.0	24	84	12	62	33	2	0	64	1.05
57776563--57776605	23	1.9	23	85	4	61	62	2	6	27	1.33
57785789--57785817	13	2.1	14	93	6	51	75	13	0	10	1.04
57787054--57787092	17	2.3	17	86	8	53	17	2	2	76	1.01
57794804--57794842	18	2.2	18	90	0	60	48	7	7	35	1.61
57795104--57795134	16	1.9	16	93	0	53	35	6	9	48	1.62
57795806--57795859	28	1.9	28	96	0	99	27	14	12	44	1.82
57795968--57796045	34	2.3	33	82	4	93	28	12	15	43	1.83
57799336--57799480	66	2.2	66	79	0	155	24	21	20	33	1.97
57799474--57799560	36	2.4	36	90	0	129	35	21	16	26	1.94
57804350--57804374	13	1.9	13	100	0	50	32	16	16	36	1.90
57825737--57825764	6	4.7	6	100	0	56	14	14	0	71	1.15
57827606--57827662	30	1.9	30	92	0	96	26	35	28	10	1.89
57828919--57828955	6	6.3	6	90	9	51	16	0	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57828925--57828955	16	1.9	16	100	0	62	16	0	0	83	0.64
57840415--57840460	21	2.2	21	96	0	83	21	13	6	58	1.57
57852884--57852949	13	5.1	13	81	0	87	36	25	6	31	1.81
57853307--57853430	43	2.9	43	87	2	178	27	19	29	24	1.98
57854267--57854293	7	3.9	7	100	0	54	11	0	0	88	0.50
57857372--57857420	21	2.2	23	78	7	57	38	4	2	55	1.31
57857599--57857649	22	2.3	22	93	0	84	19	27	13	39	1.90
57868277--57869241	498	1.9	499	99	0	1923	25	12	15	46	1.81
57872329--57872365	16	2.3	16	90	0	56	40	5	29	24	1.77
57872347--57872439	44	2.1	45	88	6	136	30	3	29	37	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199