genome.fa.s18.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  196  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61930352--61930385	17	2.1	17	88	5	52	5	8	44	41	1.60
61930868--61931107	46	5.7	41	73	11	157	27	20	20	32	1.97
61943454--61943546	42	2.2	44	80	5	102	55	5	5	33	1.45
61945009--61945042	17	2.1	17	88	5	52	5	8	44	41	1.60
61952493--61952526	17	2.1	17	88	5	52	32	0	2	64	1.08
61967821--61967863	19	2.3	19	88	8	61	41	16	32	9	1.80
61968222--61968247	3	8.7	3	100	0	52	0	34	0	65	0.93
61968305--61968346	9	4.7	9	84	0	57	2	42	0	54	1.13
61968310--61968360	21	2.4	21	80	0	57	3	47	0	49	1.20
61968502--61968530	12	2.5	12	94	5	51	0	44	6	48	1.29
61969376--61969408	17	2.1	16	88	11	50	66	0	0	33	0.92
61970057--61970103	20	2.5	18	80	10	58	19	0	6	74	1.03
61973963--61974024	26	2.5	24	79	7	61	22	9	3	64	1.38
61974145--61974183	20	1.9	21	89	5	62	33	23	12	30	1.92
61982065--61982172	57	1.9	56	83	9	139	36	15	10	37	1.82
61983077--61983103	2	13.5	2	100	0	54	51	0	0	48	1.00
61989509--61989700	40	4.8	40	86	8	241	37	2	0	60	1.09
61989519--61989684	50	3.5	49	74	22	158	36	2	0	61	1.09
61989598--61989700	10	10.1	10	70	20	63	42	0	0	56	1.06
61989518--61989684	90	1.9	90	88	7	259	36	2	0	61	1.09
61994128--61994197	35	2.0	35	97	0	131	35	14	5	44	1.69
61994824--61994893	20	3.5	20	67	11	52	37	1	2	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61995916--61995981	31	2.1	31	88	0	96	22	10	22	43	1.84
61998854--61998893	20	2.0	20	85	9	55	2	17	25	55	1.55
61999428--61999544	44	2.7	43	81	6	137	23	24	23	27	2.00
61999678--62000072	88	4.5	88	87	3	475	24	22	23	29	1.99
61999835--62000073	44	5.5	45	66	13	142	25	24	22	27	2.00
62001727--62001791	33	2.2	31	81	15	75	12	3	9	75	1.15
62009537--62009576	20	2.0	20	85	9	55	2	17	25	55	1.55
62013206--62013245	20	2.0	20	85	9	55	2	17	25	55	1.55
62013889--62013929	15	2.8	15	82	14	50	53	4	7	34	1.50
62022446--62022602	82	1.9	82	85	6	221	40	6	7	45	1.57
62025480--62025521	20	2.1	20	82	8	50	73	7	2	16	1.15
62027292--62027341	18	2.6	19	78	18	59	40	0	2	58	1.10
62029391--62029557	58	2.9	58	94	1	282	33	20	25	20	1.97
62035169--62035213	24	1.9	24	81	4	56	57	8	2	31	1.41
62042634--62042691	21	3.0	20	78	19	68	44	10	6	37	1.65
62043632--62043752	40	3.1	37	75	13	109	37	17	19	25	1.94
62044389--62044447	28	2.1	29	87	3	84	57	1	3	37	1.25
62047412--62047471	30	2.0	30	86	0	84	6	8	58	26	1.52
62047796--62047850	23	2.4	23	87	3	76	40	20	14	25	1.90
62049160--62049197	20	1.9	20	94	0	67	36	13	0	50	1.42
62062926--62063016	25	3.7	25	76	1	67	27	18	25	28	1.98
62066362--62066414	22	2.4	22	93	0	88	62	0	16	20	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62078720--62078783	29	2.2	29	75	10	69	45	10	4	39	1.60
62081060--62081118	32	2.0	32	80	12	72	54	0	1	44	1.10
62081271--62081318	22	2.1	23	84	3	62	41	2	2	54	1.24
62084907--62084933	13	2.1	13	100	0	54	48	7	22	22	1.75
62095771--62095801	13	2.4	13	94	0	53	35	0	3	61	1.12
62097370--62097463	48	2.0	48	85	8	129	20	12	26	40	1.88
62108485--62108525	19	2.1	20	86	13	59	58	0	2	39	1.11
62111747--62111784	18	2.1	18	90	0	58	23	2	0	73	0.95
62118210--62118255	16	3.1	16	78	12	53	47	0	0	52	1.00
62118215--62118281	31	2.3	29	82	17	77	47	0	0	52	1.00
62118317--62118346	6	5.0	6	100	0	60	33	0	0	66	0.92
62118668--62118707	16	2.5	16	91	0	62	47	2	7	42	1.45
62118640--62118692	22	2.4	22	87	0	70	52	1	1	43	1.23
62118696--62118832	59	2.6	50	80	18	184	41	5	8	45	1.56
62118714--62118871	59	2.7	59	97	0	298	40	5	9	44	1.61
62118938--62118981	24	1.9	24	90	9	74	61	2	0	36	1.09
62119288--62119334	25	1.9	24	87	12	69	36	0	2	61	1.08
62119401--62119579	68	2.9	59	83	13	250	45	9	4	40	1.57
62119490--62119517	9	3.1	9	100	0	56	57	10	0	32	1.33
62119431--62119601	68	2.5	68	97	1	319	47	8	4	39	1.54
62119611--62119642	17	1.9	17	93	6	57	56	0	0	43	0.99
62119797--62119862	28	2.4	28	80	12	75	39	0	4	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62130750--62130820	35	2.0	35	97	0	133	23	12	19	43	1.86
62133643--62133671	14	2.0	15	93	6	51	37	0	13	48	1.43
62134995--62135020	11	2.4	11	100	0	52	38	0	0	61	0.96
62139066--62139809	234	3.1	233	91	4	1127	21	18	19	40	1.92
62139372--62139848	247	1.9	244	88	5	710	23	17	18	40	1.91
62142665--62142690	13	2.0	13	100	0	52	38	0	0	61	0.96
62142742--62142792	16	3.0	16	72	22	50	45	0	0	54	0.99
62142742--62142813	35	2.1	34	82	12	85	44	0	1	54	1.08
62144189--62144247	23	2.7	22	85	10	77	37	8	18	35	1.81
62145305--62145550	39	6.3	39	84	1	278	33	12	19	34	1.89
62150143--62150273	66	2.0	66	93	0	226	32	10	20	35	1.87
62150514--62150547	16	2.1	16	89	10	52	44	0	5	50	1.26
62150525--62150669	47	3.1	47	72	16	158	44	2	3	49	1.30
62150511--62150637	44	2.8	43	73	15	123	46	2	3	47	1.34
62150755--62150937	59	3.1	57	68	11	179	43	3	5	48	1.42
62150718--62150996	120	2.3	117	92	7	468	44	2	5	48	1.38
62150825--62150859	18	2.0	17	88	5	52	45	0	0	54	0.99
62150958--62150999	15	2.7	16	82	14	52	50	0	2	47	1.14
62151144--62151234	45	2.0	45	85	2	121	37	28	6	27	1.82
62151215--62151283	16	4.2	16	94	3	120	37	36	0	26	1.57
62151215--62151283	33	2.1	32	94	2	120	37	36	0	26	1.57
62151965--62152022	26	2.3	26	79	5	66	22	12	8	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62153620--62153658	19	2.0	20	85	5	53	46	7	0	46	1.31
62161408--62161438	12	2.6	12	100	0	62	6	25	9	58	1.54
62163677--62163705	13	2.3	13	94	5	51	51	20	0	27	1.47
62164147--62164188	18	2.3	18	87	0	57	57	4	7	30	1.47
62170648--62170717	29	2.4	30	80	2	79	37	12	10	40	1.77
62174865--62174928	26	2.3	26	84	12	76	64	0	0	35	0.94
62174849--62174928	29	2.8	28	75	19	85	62	0	1	36	1.03
62178484--62178531	22	2.1	23	81	18	64	35	0	4	60	1.16
62178490--62178531	22	1.9	22	90	9	68	35	0	4	59	1.19
62178931--62178978	21	2.2	22	77	3	53	52	8	2	37	1.44
62179535--62179598	25	2.6	25	100	0	128	32	18	6	42	1.76
62181883--62181934	26	2.0	26	100	0	104	57	3	7	30	1.45
62183418--62183469	20	2.5	21	77	17	56	75	3	5	15	1.14
62184029--62184091	19	3.4	19	65	20	51	57	17	17	7	1.63
62184016--62184090	37	2.0	37	97	0	141	56	17	16	10	1.67
62188456--62188507	27	1.9	27	100	0	104	25	26	23	25	2.00
62189356--62189413	25	2.3	25	79	5	64	62	1	3	32	1.22
62190529--62190582	8	7.7	7	87	8	51	57	12	5	24	1.57
62190606--62190681	9	8.4	9	80	0	89	25	11	23	39	1.89
62190606--62190673	18	3.8	18	92	0	109	23	13	25	38	1.91
62197797--62197826	13	2.3	13	94	0	51	63	0	0	36	0.95
62202504--62202535	17	1.9	16	93	6	55	37	6	3	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62204139--62204202	23	2.8	23	86	9	69	42	10	14	32	1.80
62206487--62206540	15	3.5	15	70	9	54	59	3	0	37	1.15
62206617--62206678	23	2.7	23	82	5	72	43	11	9	35	1.73
62207319--62207358	5	8.2	5	88	5	64	20	2	0	77	0.88
62207319--62207355	19	1.9	19	94	0	65	18	2	0	78	0.87
62208221--62208293	25	2.9	25	78	13	71	79	0	13	6	0.92
62208221--62208260	21	2.0	21	90	5	64	80	0	17	2	0.83
62208226--62208287	12	5.0	12	76	18	56	83	0	11	4	0.78
62208817--62208843	4	6.8	4	100	0	54	77	0	0	22	0.76
62208967--62209004	20	1.9	20	88	0	58	39	13	7	39	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199