Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  60  of  199  ( 23841 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23204961--23204998
17
2.2
18
95
4
69
68
0
0
31
0.90
23204986--23205036
20
2.5
20
84
12
59
54
1
3
39
1.30
23204987--23205036
21
2.4
20
80
9
55
54
2
4
40
1.31
23204969--23205093
19
6.4
20
68
14
55
60
2
3
34
1.26
23205080--23205124
21
2.1
21
84
8
56
60
4
8
26
1.46
23205342--23205399
18
3.2
18
75
18
57
37
1
0
60
1.07
23205292--23205390
45
2.2
46
85
3
130
37
3
1
58
1.20
23205342--23205396
19
2.9
18
76
12
58
40
1
0
58
1.09
23205840--23206033
64
3.1
61
70
7
174
21
14
17
47
1.82
23209530--23209572
22
2.0
22
85
0
59
58
11
11
18
1.63
23209537--23209578
11
3.8
11
80
0
57
54
9
14
21
1.68
23211493--23211517
8
3.1
8
100
0
50
0
12
12
76
1.04
23234180--23234218
20
2.0
20
84
0
51
64
2
0
33
1.08
23235760--23235806
24
2.0
24
83
4
60
51
2
0
46
1.13
23242318--23242351
16
2.1
16
88
5
50
47
0
5
47
1.26
23244991--23245015
7
3.6
7
100
0
50
48
0
0
52
1.00
23246580--23246619
21
1.9
21
94
0
71
22
12
10
55
1.67
23251226--23251258
3
11.3
3
87
6
50
3
30
0
66
1.06
23255539--23255576
20
2.0
20
89
5
60
47
5
0
47
1.24
23255998--23256041
22
2.0
22
86
8
63
43
2
4
50
1.35
23255967--23256043
32
2.5
31
81
8
84
42
5
6
45
1.52
23265298--23265338
19
2.2
19
86
4
57
60
4
0
34
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23265345--23265392
19
2.6
19
90
3
71
56
2
0
41
1.11
23275811--23275843
3
11.0
3
100
0
66
33
0
33
33
1.58
23287069--23287100
14
2.3
14
100
0
64
75
0
0
25
0.81
23287079--23287224
68
2.1
69
92
2
249
46
10
6
36
1.63
23287211--23287263
9
6.1
9
82
8
74
52
13
0
33
1.40
23287220--23287263
16
2.6
17
89
7
63
52
13
0
34
1.41
23287210--23287266
25
2.3
25
90
0
87
52
12
0
35
1.39
23287212--23287266
16
3.3
16
80
19
60
50
12
0
36
1.41
23287336--23287377
16
2.6
16
92
0
66
42
7
2
47
1.43
23287353--23287412
22
2.7
23
82
7
70
51
1
1
45
1.21
23288293--23288333
19
2.1
20
86
13
59
31
4
0
63
1.15
23288317--23288380
27
2.4
26
79
7
67
50
0
3
46
1.17
23290516--23290568
21
2.5
21
87
0
70
30
33
9
26
1.88
23304401--23304441
21
2.0
21
90
0
64
29
21
29
19
1.98
23309450--23309492
22
2.0
22
90
0
68
58
0
0
41
0.98
23309995--23310057
24
2.7
22
82
7
63
49
0
1
49
1.10
23310467--23310505
11
3.4
11
80
13
51
51
0
2
46
1.14
23310485--23310522
14
2.4
17
87
12
55
47
0
0
52
1.00
23310614--23310638
13
1.9
13
100
0
50
44
0
0
56
0.99
23310645--23310670
3
8.7
3
100
0
52
34
0
0
65
0.93
23316290--23316334
22
2.0
22
83
8
56
33
20
2
44
1.63
23318820--23318853
3
11.3
3
100
0
68
64
0
35
0
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23323767--23323825
2
29.5
2
100
0
118
50
0
49
0
1.00
23339441--23339504
24
2.7
24
74
13
62
45
4
1
48
1.32
23346024--23346058
6
5.8
6
100
0
70
14
0
0
85
0.59
23348762--23348801
19
2.0
20
85
4
55
25
20
7
47
1.75
23351628--23351690
7
8.7
7
81
11
74
69
0
17
12
1.18
23351644--23351682
20
2.0
20
94
0
69
74
0
15
10
1.07
23351638--23351698
28
2.2
28
88
5
88
68
0
18
13
1.20
23351628--23351690
13
4.4
14
84
10
74
69
0
17
12
1.18
23351638--23351700
14
4.5
14
82
9
67
68
0
19
12
1.21
23352954--23353549
132
4.5
132
91
1
926
30
19
22
27
1.98
23354411--23354439
6
4.8
6
100
0
58
13
0
0
86
0.58
23368701--23368863
68
2.4
67
82
3
193
31
17
26
23
1.97
23371414--23371477
22
3.0
22
83
4
85
39
20
3
37
1.68
23371406--23371471
21
3.2
21
83
8
82
45
16
3
34
1.63
23373696--23373877
91
2.0
89
88
5
267
29
13
11
45
1.79
23375484--23375509
12
2.2
12
100
0
52
30
15
15
38
1.88
23382093--23382836
371
2.0
370
93
1
1258
26
18
16
38
1.92
23387383--23387440
22
2.7
21
82
10
80
44
18
3
32
1.67
23392526--23392583
22
2.7
21
82
10
80
44
18
3
32
1.67
23397597--23397627
9
3.4
9
100
0
62
80
0
0
19
0.71
23397797--23397859
32
2.0
32
87
6
92
61
7
0
30
1.24
23402370--23402428
32
1.9
30
86
6
82
50
1
6
40
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23405108--23405166
25
2.3
26
88
2
93
37
16
20
25
1.93
23405115--23405163
26
1.9
25
95
4
89
38
18
24
18
1.93
23405117--23405173
26
2.3
25
87
6
80
36
21
22
19
1.95
23406807--23406833
4
6.8
4
100
0
54
22
0
25
51
1.48
23410236--23410265
16
1.9
16
93
6
53
46
0
0
53
1.00
23411225--23411262
19
2.1
19
85
5
51
34
5
18
42
1.73
23420391--23420476
43
2.0
43
90
0
136
47
3
20
27
1.66
23422735--23422831
33
2.8
35
72
20
89
45
3
1
50
1.24
23427435--23427501
34
1.9
35
87
3
100
31
7
14
46
1.73
23429442--23429467
10
2.6
10
100
0
52
15
7
0
76
0.99
23437032--23437075
21
2.1
21
83
8
54
43
0
9
47
1.35
23445000--23445079
3
26.3
3
74
12
65
31
3
5
60
1.36
23444992--23445038
15
3.6
13
78
15
53
31
0
6
61
1.21
23445000--23445088
21
4.2
20
75
12
72
32
3
4
59
1.34
23444992--23445093
9
10.2
10
74
13
52
32
2
4
59
1.33
23450899--23450941
22
1.9
23
86
13
63
46
0
0
53
1.00
23451272--23451310
19
2.1
19
95
0
69
43
0
5
51
1.24
23452500--23452549
23
2.2
23
100
0
100
44
12
12
32
1.78
23454268--23454311
21
2.1
21
83
8
54
43
0
9
47
1.35
23473293--23473554
71
3.5
73
78
12
266
46
6
8
39
1.58
23476970--23477036
9
7.4
9
84
0
89
41
19
10
28
1.84
23476970--23477041
18
3.9
18
85
1
99
41
19
11
27
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23476970--23477041
27
2.6
27
91
2
117
41
19
11
27
1.85
23477140--23477180
5
7.6
5
84
15
55
4
0
53
41
1.22
23477139--23477173
18
1.9
18
100
0
70
8
0
51
40
1.33
23482589--23482651
16
3.9
16
73
8
56
44
7
7
39
1.63
23482587--23482666
32
2.5
32
83
4
90
42
10
7
40
1.67
23486258--23486294
2
18.5
2
94
0
65
48
2
48
0
1.15
23488889--23489188
129
2.3
129
88
0
447
30
22
17
30
1.96
23489147--23489234
46
1.9
46
85
0
122
29
22
18
29
1.97
23489018--23489363
175
2.0
175
88
1
514
30
21
17
30
1.96
23488758--23490275
304
5.0
304
90
1
2183
30
21
17
30
1.96
23489193--23489492
129
2.3
129
88
1
422
30
22
17
29
1.97
23489322--23489667
175
2.0
175
90
0
548
29
22
17
30
1.97
23489018--23490837
479
3.8
477
90
3
2382
30
21
17
30
1.96
23489461--23489796
129
2.6
129
87
2
433
30
21
17
30
1.96
23488810--23490796
44
45.6
44
66
13
359
30
21
17
30
1.96
23489592--23490146
175
3.2
174
89
2
830
29
21
18
30
1.96
23490065--23490625
175
3.2
175
91
1
878
30
21
17
30
1.97
23490111--23490534
87
4.9
87
72
10
310
29
21
18
30
1.97
23488758--23490450
304
5.6
301
89
4
1810
30
21
17
30
1.96
23489895--23490850
304
3.1
304
86
4
1166
29
21
18
30
1.97
23490455--23490754
129
2.3
129
91
0
474
29
22
18
30
1.97
23492266--23492309
8
5.6
8
94
5
81
11
11
0
77
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23492257--23492308
15
3.5
15
89
7
79
13
13
0
73
1.11
23492257--23492309
23
2.4
22
93
3
88
13
13
0
73
1.10
23492257--23492308
8
7.0
7
85
12
61
13
13
0
73
1.11
23493172--23493246
26
3.0
24
74
16
71
10
1
5
82
0.88
23493200--23493245
8
5.5
8
87
5
56
10
0
6
82
0.83
23493168--23493248
17
4.3
18
80
16
85
11
1
7
80
0.96
23493950--23493986
17
2.1
18
90
5
58
45
0
24
29
1.53
23496562--23496616
13
4.3
13
73
11
51
36
0
3
60
1.15
23497723--23497762
11
3.6
11
86
6
55
22
25
0
52
1.47
23499528--23499565
18
2.1
18
95
0
67
23
26
10
39
1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199