genome.fa.s18.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  125  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41897709--41897758	26	1.9	26	95	0	91	38	10	6	46	1.62
41899667--41899692	12	2.2	12	100	0	52	23	0	19	57	1.40
41900978--41901071	27	3.6	27	92	5	149	30	28	12	27	1.93
41908168--41908203	18	2.0	18	88	0	54	41	5	13	38	1.68
41918350--41918401	26	2.0	26	100	0	104	38	11	7	42	1.70
41920470--41920521	26	2.0	26	100	0	104	38	11	7	42	1.70
41926577--41926628	26	2.0	26	92	0	86	40	11	5	42	1.65
41928899--41929038	41	3.5	40	84	2	172	22	22	12	42	1.87
41930301--41930442	76	1.9	76	83	0	185	24	16	26	31	1.97
41934048--41934138	43	2.1	43	100	0	182	37	15	10	36	1.83
41936994--41937051	30	1.9	30	82	0	71	34	8	22	34	1.85
41937292--41937326	18	1.9	18	88	0	52	31	0	34	34	1.58
41937382--41937536	33	4.6	33	75	17	133	19	20	27	32	1.97
41937405--41937616	76	2.8	76	89	0	318	21	19	26	32	1.97
41944628--41944662	18	1.9	18	88	0	52	31	0	34	34	1.58
41944742--41944951	75	2.8	75	82	4	271	21	18	26	33	1.96
41952596--41952685	38	2.4	38	78	0	99	31	17	14	36	1.90
41954744--41954806	30	2.1	31	85	8	85	38	3	14	44	1.61
41966686--41967127	47	9.4	47	93	0	722	32	8	30	28	1.87
41967250--41967324	37	2.0	37	87	5	107	21	21	30	26	1.98
41981056--41981248	38	5.1	38	85	2	235	37	29	17	16	1.91
41981137--41981203	16	3.8	16	70	21	53	35	29	19	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41981056--41981248	76	2.5	76	85	3	264	37	29	17	16	1.91
41983635--41983676	20	2.2	19	91	4	66	16	21	42	19	1.89
41983907--41984045	53	2.6	53	82	5	156	40	20	20	18	1.92
41983911--41984045	27	5.0	27	79	3	148	40	20	20	19	1.91
41984428--41984587	28	5.7	28	82	2	169	26	25	21	26	1.99
41984430--41984587	84	1.9	84	82	2	201	26	25	21	25	2.00
41984458--41984615	28	5.4	29	81	5	108	24	25	23	27	2.00
41986196--41986331	27	5.1	27	78	8	118	40	22	19	17	1.91
41986200--41986333	26	5.0	27	79	5	148	40	20	20	18	1.92
41986196--41986333	53	2.6	53	85	4	172	39	21	20	18	1.92
41986722--41986848	28	4.5	28	83	0	137	28	25	21	24	1.99
41991512--41991550	17	2.2	18	86	4	53	7	7	10	74	1.22
41992375--41992421	24	1.9	24	86	4	67	34	0	40	25	1.56
41992829--41992863	17	2.0	17	88	5	52	14	17	42	25	1.86
41993060--41993166	27	4.0	27	86	6	137	44	21	14	18	1.86
41993058--41993164	54	2.0	54	87	7	155	44	22	14	18	1.85
41993378--41993427	26	1.9	26	83	0	64	18	20	22	40	1.92
41994954--41995023	25	2.8	25	71	0	68	22	2	22	51	1.61
41995974--41995998	13	1.9	13	100	0	50	56	8	16	20	1.65
41996017--41996079	20	3.1	20	64	28	51	39	11	4	44	1.61
41996308--41996449	43	3.1	43	77	14	176	35	16	2	44	1.63
41996378--41996417	19	2.1	19	100	0	80	40	20	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41999534--41999741	91	2.3	91	91	0	326	45	2	3	48	1.35
41999534--41999672	47	3.0	44	68	18	122	45	2	5	46	1.39
41999645--41999716	26	2.6	28	84	8	85	41	0	4	54	1.20
41999566--41999709	47	3.1	47	69	16	138	43	1	4	51	1.29
41999574--41999716	44	3.2	43	68	16	119	44	1	3	50	1.27
41999757--42000049	120	2.4	119	90	4	439	41	2	5	49	1.40
41999882--41999933	15	3.6	15	80	12	56	42	0	3	53	1.19
42000002--42000043	15	2.9	15	82	10	52	50	0	0	50	1.00
41999861--42000046	54	3.2	54	65	21	142	43	1	5	48	1.36
41999986--42000300	155	2.0	157	95	1	562	47	5	3	44	1.42
42000153--42000187	18	2.0	17	88	5	52	45	0	0	54	0.99
42000423--42000490	16	4.2	16	92	0	118	35	36	0	27	1.58
42027116--42027176	32	1.9	32	83	12	81	44	4	1	49	1.33
42031078--42031117	16	2.5	16	87	0	62	15	27	42	15	1.86
42034665--42034710	3	15.3	3	78	17	51	65	2	0	32	1.05
42035994--42036362	44	8.4	44	70	12	215	29	25	17	27	1.97
42035949--42036617	131	5.1	132	91	2	947	29	24	17	27	1.98
42035949--42036617	263	2.5	264	88	3	972	29	24	17	27	1.98
42037908--42037940	14	2.3	15	89	5	50	6	12	6	75	1.16
42043249--42043297	3	16.3	3	80	16	57	65	2	0	32	1.04
42045741--42045783	20	2.2	20	86	0	59	44	6	0	48	1.29
42048704--42048783	42	1.9	42	92	0	133	11	18	25	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42048712--42048796	42	2.0	42	88	0	125	10	20	25	43	1.83
42049644--42049687	13	3.2	13	76	17	52	47	0	2	50	1.13
42049642--42049705	15	4.1	15	77	16	60	46	0	1	51	1.10
42049641--42049706	29	2.3	29	83	0	87	46	0	1	51	1.10
42051414--42051442	14	2.1	14	93	6	51	0	13	0	86	0.58
42052471--42052537	32	2.1	33	88	2	100	28	8	10	52	1.66
42052781--42052834	21	2.7	20	80	5	63	38	11	5	44	1.63
42052968--42053021	20	2.7	20	82	5	65	35	11	3	50	1.56
42052873--42053021	40	3.7	39	72	16	117	37	12	6	43	1.68
42053081--42053184	20	5.1	20	72	4	73	38	16	0	44	1.54
42056105--42056268	20	8.2	20	69	11	104	39	17	4	38	1.71
42056105--42056268	40	4.1	39	77	11	145	39	17	4	38	1.71
42061141--42061206	20	3.3	19	79	10	69	37	18	1	42	1.59
42061156--42061217	21	3.0	21	85	2	81	33	16	1	48	1.56
42061253--42061302	20	2.5	20	87	6	66	38	20	4	38	1.71
42061145--42061457	149	2.1	148	82	5	380	38	17	3	39	1.68
42061403--42061591	20	9.4	20	72	13	129	41	17	4	35	1.71
42061403--42061593	80	2.4	80	82	5	224	41	17	4	36	1.71
42061145--42061508	149	2.5	149	80	4	362	38	18	4	38	1.70
42061403--42061593	40	4.8	40	76	8	183	41	17	4	36	1.71
42061580--42061770	40	4.8	41	74	11	146	42	13	6	37	1.71
42061681--42061757	20	3.8	20	77	6	84	42	16	3	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42061701--42061765	20	3.2	20	70	8	51	41	15	3	40	1.63
42061828--42061910	20	4.2	20	76	0	67	39	14	7	38	1.74
42061956--42062075	20	5.9	20	73	8	82	33	10	5	50	1.61
42069288--42069357	33	2.1	33	84	10	90	20	22	14	42	1.88
42073707--42073813	44	2.5	44	93	3	182	28	24	2	44	1.67
42073707--42073825	44	2.7	43	87	10	179	26	25	2	45	1.66
42097095--42097151	22	2.6	22	83	8	80	24	14	15	45	1.83
42106439--42106471	7	4.6	7	92	7	57	87	0	0	12	0.53
42106439--42106471	15	2.3	15	94	5	59	87	0	0	12	0.53
42110384--42110522	35	4.0	35	84	1	163	27	24	15	32	1.96
42113729--42113996	30	8.9	30	81	0	266	30	16	19	33	1.94
42113729--42113996	60	4.5	60	87	0	320	30	16	19	33	1.94
42113729--42113996	90	3.0	90	82	0	320	30	16	19	33	1.94
42119229--42119290	32	1.9	32	100	0	124	33	19	12	33	1.90
42119735--42119778	19	2.2	20	92	8	72	25	4	22	47	1.70
42119743--42119781	19	2.1	19	100	0	78	25	5	20	48	1.70
42120624--42120667	21	2.1	21	82	0	52	27	6	31	34	1.83
42127673--42127796	45	2.7	45	86	3	169	46	10	18	24	1.80
42134402--42134491	31	2.9	31	91	0	144	33	40	4	22	1.74
42137434--42137462	15	1.9	15	100	0	58	55	10	0	34	1.34
42144473--42144535	31	2.0	31	90	0	99	42	7	15	33	1.76
42147519--42147595	38	2.0	38	92	5	129	28	14	6	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42147671--42147727	27	2.2	26	83	3	69	52	3	3	40	1.35
42155479--42155545	29	2.3	29	81	0	71	22	34	22	20	1.97
42166539--42166618	32	2.5	32	85	0	106	21	16	36	26	1.94
42169480--42169565	44	2.0	44	83	4	111	40	4	19	34	1.73
42179174--42179241	13	5.2	13	70	19	52	38	0	0	61	0.96
42179172--42179212	17	2.4	18	76	15	52	43	0	0	56	0.99
42179191--42179239	24	2.1	23	88	3	71	40	0	0	59	0.98
42179174--42179241	26	2.5	28	77	22	74	38	0	0	61	0.96
42180569--42180619	11	4.6	12	83	13	65	25	0	3	70	1.04
42180553--42180632	19	3.9	21	75	18	71	30	1	3	65	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199