genome.fa.s18.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  136  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45370392--45370474	25	3.3	24	76	15	71	15	25	22	36	1.94
45370392--45370486	50	1.9	49	82	6	120	15	25	23	35	1.94
45370417--45370598	25	7.3	25	72	11	106	18	24	21	35	1.96
45376927--45376971	22	2.0	22	83	8	56	40	4	0	55	1.20
45377016--45377042	14	1.9	14	100	0	54	37	22	25	14	1.93
45378587--45378627	20	2.0	20	100	0	82	29	24	4	41	1.75
45381889--45381930	14	3.1	13	78	21	50	59	4	0	35	1.19
45381897--45381934	16	2.4	16	82	4	51	60	5	0	34	1.19
45382173--45382260	3	29.0	3	90	2	104	60	2	5	31	1.33
45385831--45385921	34	2.6	34	78	10	87	37	23	12	27	1.90
45388472--45388501	6	4.8	6	95	4	51	16	66	0	16	1.25
45392980--45393029	13	3.2	16	72	16	52	50	0	0	50	1.00
45392983--45393048	31	2.2	30	86	10	91	45	1	0	53	1.09
45396950--45396993	8	5.5	8	86	8	54	61	0	2	36	1.09
45397662--45397708	2	23.5	2	95	0	85	0	46	0	53	1.00
45399507--45399580	25	3.0	24	80	4	76	31	18	25	24	1.98
45399539--45399586	25	1.9	25	86	0	69	33	18	25	22	1.97
45399540--45399649	48	2.3	48	75	12	109	36	19	23	20	1.95
45399614--45399770	26	6.3	24	73	14	90	34	21	25	19	1.96
45399613--45399770	25	6.3	26	72	19	74	34	20	25	18	1.96
45401601--45401770	51	3.3	52	76	8	188	27	15	27	30	1.96
45408277--45408329	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45411280--45411352	37	2.0	37	97	0	137	32	12	21	32	1.91
45413112--45413298	51	3.7	49	75	4	178	25	17	25	32	1.97
45413304--45413395	45	2.0	45	91	0	148	27	16	22	33	1.95
45418733--45418777	21	2.1	22	84	8	58	28	11	2	57	1.45
45418783--45418825	17	2.5	17	88	0	59	25	4	0	69	1.07
45418774--45418872	10	10.4	9	71	19	51	28	3	1	67	1.12
45418774--45418853	19	4.2	19	74	9	74	30	3	0	66	1.09
45419907--45419946	20	2.1	19	90	4	62	40	0	5	55	1.22
45431013--45431073	26	2.3	26	83	5	70	18	24	22	34	1.96
45431116--45431177	24	2.6	24	79	5	72	20	22	16	40	1.91
45431116--45431198	24	3.5	23	75	9	69	20	21	18	39	1.92
45434985--45435037	12	4.2	12	77	13	52	45	3	7	43	1.50
45435668--45435818	41	3.7	41	91	2	223	25	21	27	25	2.00
45438220--45438273	24	2.2	25	83	3	65	48	12	9	29	1.73
45438834--45438867	16	2.2	16	89	5	52	73	0	26	0	0.83
45447193--45447244	24	2.2	24	89	0	77	53	7	3	34	1.48
45449342--45449520	50	3.6	50	88	0	250	25	23	30	20	1.99
45451457--45451509	24	2.2	24	86	0	70	54	9	1	33	1.43
45453661--45453847	51	3.7	50	82	7	225	25	13	27	34	1.93
45453661--45453864	102	2.0	102	87	3	295	25	14	26	33	1.94
45457566--45457597	16	2.0	16	93	0	55	31	6	28	34	1.82
45466151--45466200	25	2.0	25	96	0	91	40	8	14	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45471345--45471493	58	2.6	58	81	0	163	36	12	27	22	1.91
45471557--45471640	33	2.5	33	80	0	105	47	14	21	16	1.82
45476059--45476140	27	3.0	27	78	1	83	32	21	29	15	1.95
45476657--45476705	25	2.0	25	88	8	73	46	10	6	36	1.63
45476818--45476934	62	1.9	61	87	5	175	50	4	4	41	1.41
45476912--45477020	20	5.8	18	72	17	71	54	2	0	42	1.21
45478111--45478471	127	2.7	127	86	6	470	30	23	15	29	1.95
45481115--45481193	29	2.8	28	75	11	72	65	2	2	29	1.18
45481145--45481192	10	5.1	10	82	7	57	66	2	0	31	1.03
45481145--45481295	9	16.0	9	67	22	55	60	3	2	32	1.29
45481706--45481745	19	2.0	20	85	4	55	35	0	2	62	1.09
45481812--45481872	19	3.3	18	75	11	52	29	3	1	65	1.18
45497578--45497611	4	8.5	4	87	12	52	23	2	0	73	0.97
45498890--45498949	24	2.5	24	74	12	61	50	5	6	38	1.51
45498979--45499013	18	1.9	18	88	0	52	51	2	8	37	1.47
45499402--45499437	3	12.0	3	100	0	72	66	0	0	33	0.92
45502154--45503202	23	44.8	23	75	12	770	40	16	14	28	1.88
45502132--45503211	93	11.5	93	92	2	1750	40	17	14	28	1.88
45502132--45503201	375	2.9	376	96	1	1909	39	17	14	28	1.88
45503910--45504029	28	4.3	28	88	6	101	31	24	11	32	1.91
45516732--45516797	32	2.0	33	97	2	125	12	54	6	27	1.60
45521924--45521950	11	2.5	11	100	0	54	22	7	18	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45523348--45523541	92	2.1	92	88	5	286	44	4	4	46	1.41
45523519--45523617	52	2.0	52	80	11	118	45	6	2	46	1.39
45523574--45523607	17	2.0	17	94	0	59	44	5	0	50	1.26
45523579--45523626	17	3.0	16	79	17	55	45	6	2	45	1.40
45523667--45523701	18	2.0	17	88	5	52	40	0	0	60	0.97
45523614--45523847	129	1.8	130	95	0	425	42	2	5	48	1.41
45523796--45523830	18	2.0	17	88	5	52	45	0	0	54	0.99
45523784--45524055	144	1.9	147	94	3	487	47	2	3	46	1.34
45523940--45523974	18	2.0	17	88	5	52	45	0	0	54	0.99
45524136--45524230	45	2.1	45	88	1	138	32	27	5	34	1.79
45524211--45524278	16	4.2	16	92	0	109	35	35	0	29	1.58
45540197--45540244	24	2.0	25	84	12	64	41	16	12	29	1.85
45541295--45541325	5	6.0	5	92	7	53	77	0	0	22	0.77
45544994--45545045	26	2.0	26	92	3	86	28	1	0	69	0.99
45544995--45545052	26	2.2	27	84	3	73	31	1	0	67	1.01
45549423--45549601	57	3.1	57	87	2	243	47	7	16	28	1.73
45549768--45549820	28	2.0	26	85	7	70	41	0	15	43	1.46
45552167--45552249	30	2.8	28	71	10	67	14	33	32	19	1.92
45553803--45553850	12	3.8	12	83	8	60	37	8	0	54	1.31
45555865--45555952	25	3.5	25	68	11	63	26	14	22	36	1.93
45555856--45555965	50	2.2	50	88	0	157	23	14	25	36	1.93
45562086--45562123	20	2.0	20	94	5	69	57	0	5	36	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45565709--45565741	8	4.1	8	100	0	66	75	0	0	24	0.80
45589862--45590047	50	3.6	51	83	5	180	26	18	27	26	1.98
45589910--45590077	50	3.4	50	85	3	203	29	19	27	23	1.98
45589985--45590091	50	2.1	50	82	3	126	31	23	24	20	1.98
45600056--45600102	22	2.1	23	84	4	60	46	0	4	48	1.21
45600879--45600944	20	3.3	19	77	8	69	13	34	16	34	1.88
45600863--45600983	40	3.0	40	91	0	188	14	30	18	36	1.91
45600863--45601031	80	2.1	80	83	0	203	16	32	17	33	1.93
45608922--45608960	12	3.2	12	85	0	51	20	23	5	51	1.67
45609222--45609441	50	4.4	50	85	2	271	21	29	23	26	1.99
45631921--45632048	63	2.0	62	92	1	211	39	20	10	28	1.86
45636042--45636091	24	2.1	24	100	0	100	56	12	32	0	1.36
45637806--45637861	28	2.0	28	100	0	112	42	7	14	35	1.73
45638414--45638441	7	4.0	7	100	0	56	42	0	14	42	1.45
45638656--45638686	4	7.8	4	100	0	62	74	0	0	25	0.82
45639151--45639183	14	2.4	14	94	0	57	69	0	6	24	1.10
45643431--45643457	14	1.9	14	100	0	54	18	0	29	51	1.46
45643586--45643636	26	1.9	27	84	4	68	66	5	5	21	1.35
45645008--45645062	24	2.4	23	79	8	58	69	3	10	16	1.32
45646973--45646997	13	1.9	13	100	0	50	44	0	16	40	1.47
45656246--45656438	50	3.8	50	87	6	248	22	31	20	25	1.98
45656246--45656438	100	1.9	101	87	1	280	22	31	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45656534--45656560	13	2.1	13	100	0	54	62	7	0	29	1.22
45660228--45660306	18	4.4	18	77	14	83	30	3	20	45	1.68
45660228--45660306	36	2.2	36	86	8	108	30	3	20	45	1.68
45662770--45662794	13	1.9	13	100	0	50	56	0	0	44	0.99
45663019--45663048	12	2.5	12	94	0	51	43	0	3	53	1.17
45663136--45663195	20	3.0	20	81	13	61	58	1	5	35	1.30
45663149--45663203	20	3.1	17	80	15	58	65	1	1	30	1.13
45664748--45665423	50	13.5	50	68	3	347	21	25	23	30	1.99
45664685--45665430	100	7.5	100	90	0	1064	21	25	23	29	1.99
45664685--45665430	299	2.5	299	89	1	1091	21	25	23	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199