genome.fa.s18.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  28  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11740912--11740961	25	2.0	26	88	4	75	42	38	6	14	1.70
11746095--11746196	50	2.0	50	92	3	170	44	24	6	24	1.78
11750440--11750715	137	2.0	138	89	3	423	47	14	13	24	1.80
11753572--11753618	25	2.0	24	83	8	60	46	2	0	51	1.13
11756718--11757872	576	2.0	576	99	0	2301	25	16	18	39	1.91
11763571--11763607	12	3.0	13	84	11	51	29	40	18	10	1.85
11774053--11774082	16	1.9	15	93	6	51	36	0	10	53	1.35
11777573--11777713	70	2.0	70	97	0	264	28	12	11	47	1.76
11780402--11780442	21	2.0	21	90	0	64	19	29	21	29	1.98
11783453--11783506	18	3.0	18	81	8	65	62	5	1	29	1.28
11783682--11783733	25	2.0	26	85	3	70	55	1	3	38	1.29
11783682--11783736	26	2.1	26	83	6	67	54	1	3	40	1.28
11796289--11796347	31	1.9	31	96	0	109	23	38	6	30	1.81
11801825--11801866	4	10.5	4	85	10	59	73	0	26	0	0.83
11801833--11801877	20	2.3	20	80	3	56	68	0	31	0	0.89
11817615--11817654	21	1.9	21	84	0	53	7	17	2	72	1.19
11829523--11829576	20	2.6	21	88	2	83	22	9	38	29	1.85
11829839--11829890	22	2.3	22	77	9	52	50	5	0	44	1.26
11833141--11833287	64	2.3	64	97	0	285	36	8	13	41	1.76
11833919--11833950	15	2.1	15	94	0	55	53	0	15	31	1.43
11833934--11834678	379	2.0	379	98	0	1427	24	16	17	41	1.89
11849428--11849527	44	2.3	44	94	0	173	44	7	30	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11849459--11849528	22	3.2	22	61	15	54	47	4	30	18	1.68
11849670--11849715	23	2.0	23	100	0	92	47	4	13	34	1.62
11854368--11854470	13	7.8	13	65	4	62	35	7	22	33	1.83
11854364--11854472	26	4.1	26	73	13	96	37	7	21	33	1.81
11854374--11854480	54	2.0	55	92	1	180	36	6	23	33	1.81
11866517--11866610	48	2.0	48	87	8	138	19	12	27	40	1.88
11869031--11869124	48	2.0	48	87	8	138	19	12	27	40	1.88
11879386--11879538	17	8.8	16	68	21	69	43	4	2	49	1.37
11879559--11879640	9	9.8	9	67	18	52	52	1	2	43	1.22
11879613--11879645	17	1.9	17	100	0	66	48	0	0	51	1.00
11879563--11879641	39	2.0	39	87	4	115	54	1	2	41	1.22
11879728--11879761	17	2.0	17	100	0	68	41	0	0	58	0.98
11879613--11879769	61	2.6	61	79	9	196	45	3	2	49	1.32
11879731--11879801	36	2.0	35	83	5	90	47	0	1	50	1.09
11879818--11879842	13	1.9	13	100	0	50	52	0	0	48	1.00
11882117--11882189	21	3.5	21	72	9	60	2	31	13	52	1.55
11884668--11884723	6	9.2	6	79	11	60	33	1	44	19	1.61
11884668--11884723	13	4.1	13	77	18	60	33	1	44	19	1.61
11884705--11884895	60	3.2	59	77	11	237	32	3	50	13	1.59
11884853--11884897	16	2.9	16	80	12	58	33	0	53	13	1.40
11884678--11884895	118	1.8	118	95	1	393	32	3	49	14	1.61
11884853--11884899	14	3.3	14	82	8	51	34	0	53	12	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11891197--11891235	17	2.3	17	86	0	51	33	2	2	61	1.23
11891225--11891318	22	4.3	23	75	15	78	44	1	3	51	1.24
11892107--11892134	3	9.3	3	100	0	56	32	32	0	35	1.58
11894911--11894970	20	3.0	20	78	11	61	61	5	0	33	1.17
11908111--11908160	17	2.7	20	78	18	70	10	0	44	46	1.37
11912740--11912789	17	2.7	20	78	18	70	10	0	44	46	1.37
11915285--11915317	17	1.9	17	93	0	57	6	12	15	66	1.42
11930057--11930095	4	9.8	4	82	0	51	46	28	5	20	1.72
11930057--11930095	16	2.4	16	95	0	69	46	28	5	20	1.72
11939245--11939269	12	2.1	12	100	0	50	20	16	0	64	1.30
11946117--11946175	27	2.4	26	86	13	81	40	0	28	30	1.57
11946320--11946415	39	2.5	39	80	6	108	20	23	28	27	1.99
11952394--11952449	28	2.0	29	82	3	69	53	1	1	42	1.21
11953209--11953238	3	10.0	3	100	0	60	33	0	0	66	0.92
11953592--11953687	39	2.5	39	80	6	108	20	23	28	27	1.99
11968813--11968861	25	1.9	26	95	4	91	34	16	14	34	1.89
11979096--11979155	31	1.9	31	96	0	111	56	13	10	20	1.65
11979647--11979730	41	2.0	41	100	0	168	32	7	9	51	1.62
11993728--11993768	21	2.0	21	90	0	64	43	17	17	21	1.87
12003052--12003083	7	4.6	7	96	0	55	31	9	0	59	1.29
12005868--12005896	14	2.1	14	100	0	58	13	27	17	41	1.87
12006074--12006146	21	3.4	22	88	5	114	0	30	19	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12006074--12006158	21	4.0	22	85	3	102	0	29	17	52	1.45
12008676--12008863	36	5.8	31	91	7	270	53	0	8	38	1.32
12008676--12008863	67	2.9	63	85	14	272	53	0	8	38	1.32
12012439--12012496	30	1.9	30	89	0	89	41	3	24	31	1.71
12012708--12012739	13	2.5	13	94	0	55	31	0	12	56	1.37
12012834--12013075	50	4.7	50	86	4	297	26	24	29	19	1.99
12012834--12013083	100	2.4	103	88	6	364	26	24	29	20	1.99
12020028--12020085	30	1.9	30	89	0	89	41	3	24	31	1.71
12020297--12020328	13	2.5	13	94	0	55	31	0	12	56	1.37
12020423--12020665	50	4.7	50	85	5	290	26	24	29	19	1.99
12020423--12020673	100	2.4	104	87	7	359	26	23	29	20	1.99
12027527--12027583	29	1.9	30	85	3	80	40	3	24	31	1.72
12027788--12027819	13	2.5	13	94	0	55	31	0	12	56	1.37
12027918--12028148	51	4.5	51	82	8	251	25	24	29	19	1.98
12027918--12028156	105	2.4	100	86	8	315	25	24	29	20	1.99
12027921--12028110	50	3.7	50	85	7	247	24	24	31	20	1.98
12032922--12033111	3	63.7	3	70	4	71	10	24	30	35	1.88
12033029--12033109	30	2.7	30	90	0	135	9	29	28	32	1.89
12032998--12033094	45	2.2	45	86	0	131	12	26	26	34	1.92
12032973--12033111	45	3.1	43	81	8	129	11	25	28	34	1.91
12033575--12033609	18	1.9	18	100	0	70	0	22	37	40	1.55
12041135--12041165	14	2.2	14	94	0	53	16	58	9	16	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12044065--12044116	18	2.8	19	83	11	63	53	0	1	44	1.11
12044070--12044118	20	2.5	20	89	0	80	55	0	2	42	1.11
12044130--12044216	33	2.7	33	77	12	90	44	16	11	27	1.81
12044208--12044247	20	2.0	20	90	0	62	50	12	10	27	1.72
12044196--12044262	34	1.9	35	90	3	109	47	11	7	32	1.68
12044231--12044270	14	2.9	14	80	0	53	45	15	5	35	1.68
12046019--12046061	22	2.0	22	85	0	59	46	0	0	53	1.00
12049968--12050017	24	2.1	24	96	0	91	18	16	14	52	1.76
12056712--12056782	22	3.4	22	74	18	80	39	1	0	59	1.06
12056711--12056761	23	2.3	21	80	12	57	41	1	0	56	1.10
12056710--12056782	20	3.5	20	73	12	76	38	1	0	60	1.06
12056754--12056818	29	2.3	29	77	17	73	26	1	3	69	1.12
12066189--12066282	49	1.9	49	86	4	136	69	5	19	6	1.30
12069264--12069301	19	2.0	20	89	5	60	60	0	0	39	0.97
12072380--12072497	58	2.0	58	100	0	236	36	11	11	39	1.79
12072390--12072481	29	3.2	29	63	22	75	39	13	9	38	1.77
12074412--12074456	21	2.1	22	84	12	58	66	8	11	13	1.44
12077256--12077430	34	5.1	34	76	6	147	42	16	20	20	1.89
12077310--12077431	35	3.5	35	80	2	156	42	18	19	19	1.89
12077268--12077430	69	2.4	69	89	0	245	41	17	21	19	1.90
12077663--12077704	13	3.2	13	93	6	75	38	9	7	45	1.64
12093945--12094060	60	1.9	60	82	6	146	43	12	3	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12095862--12096001	46	3.0	46	90	0	208	36	6	26	30	1.82
12108306--12108366	26	2.4	25	77	2	68	37	18	1	42	1.60
12112841--12112932	9	10.3	9	73	17	59	55	4	1	39	1.27
12113352--12113490	46	3.0	46	91	5	219	29	23	11	35	1.90
12116105--12116130	11	2.4	11	100	0	52	50	7	42	0	1.31
12116786--12116834	6	8.2	6	86	0	71	36	0	10	53	1.35
12116788--12116837	12	4.2	12	94	0	82	36	0	8	56	1.29
12116788--12116837	3	16.7	3	78	0	55	36	0	8	56	1.29
12116989--12117037	23	2.0	26	88	11	77	48	0	20	30	1.50
12128302--12128371	23	3.1	21	84	12	70	67	0	1	31	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199