genome.fa.s18.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  158  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52160191--52160895	40	17.6	40	94	0	1178	27	19	28	24	1.99
52172822--52172867	19	2.3	21	82	10	62	45	13	0	41	1.43
52173481--52173518	16	2.2	18	86	9	53	57	2	5	34	1.35
52176376--52176445	23	2.9	23	76	16	70	67	8	1	22	1.26
52180659--52180704	18	2.5	19	79	13	51	36	21	8	32	1.84
52181676--52181712	18	2.1	18	90	5	58	16	43	24	16	1.87
52185326--52185410	21	4.0	22	77	8	86	40	22	21	16	1.91
52185366--52185409	23	1.9	23	100	0	88	38	22	20	18	1.93
52189142--52189207	18	3.6	17	78	10	60	40	6	18	34	1.75
52195622--52197092	641	2.3	641	86	2	1957	34	17	15	32	1.91
52203960--52204014	25	2.2	25	86	0	74	27	29	14	29	1.95
52203967--52204024	25	2.3	25	87	0	80	25	25	20	27	1.99
52206380--52206463	44	1.9	43	82	2	105	41	20	17	20	1.90
52209497--52209521	3	8.3	3	100	0	50	32	0	0	68	0.90
52211446--52211489	14	3.0	14	75	12	52	31	6	2	59	1.36
52219736--52219767	13	2.5	13	94	0	55	28	28	3	40	1.71
52226508--52226560	20	2.5	22	77	14	58	41	20	1	35	1.64
52230895--52231037	46	3.1	46	84	2	198	43	15	13	27	1.84
52230896--52231027	24	5.7	24	75	14	107	43	15	14	27	1.85
52238775--52238859	43	2.0	44	86	9	122	45	3	4	45	1.41
52239471--52239515	8	5.1	8	82	17	54	28	0	0	71	0.87
52239456--52239516	10	6.4	10	77	11	74	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52239534--52239590	26	2.2	26	81	9	64	29	1	5	63	1.27
52240453--52240542	31	2.9	31	82	12	114	45	2	20	32	1.63
52244293--52244342	23	2.2	23	92	0	82	42	24	18	16	1.89
52244461--52244525	26	2.5	26	85	7	80	35	20	20	24	1.96
52246867--52247040	64	2.8	65	82	8	200	40	17	8	33	1.79
52247119--52247161	21	2.0	22	86	13	63	41	16	0	41	1.48
52254746--52254890	63	2.3	64	84	5	188	40	17	6	34	1.77
52254719--52254897	62	2.9	64	80	10	210	40	17	7	35	1.77
52254746--52254920	63	2.8	62	82	7	160	40	17	7	34	1.77
52254967--52255009	21	2.0	22	86	13	63	41	16	0	41	1.48
52255587--52255640	28	1.9	28	85	7	74	35	16	3	44	1.66
52260422--52260506	43	2.0	44	86	9	122	45	3	4	45	1.41
52260693--52260738	13	3.1	15	76	17	60	63	0	0	36	0.95
52261116--52261160	8	5.1	8	82	17	54	28	0	0	71	0.87
52261101--52261161	10	6.4	10	77	11	74	31	0	0	68	0.89
52261179--52261235	26	2.2	26	81	9	64	29	1	5	63	1.27
52262103--52262192	31	2.9	31	82	12	114	45	2	20	32	1.63
52264380--52264456	29	2.5	31	87	4	104	27	14	11	46	1.79
52269507--52269547	14	3.0	14	85	7	57	73	0	2	24	0.96
52269564--52269682	57	2.1	57	85	6	159	31	21	2	45	1.65
52269552--52269683	29	4.5	29	82	10	144	32	19	2	45	1.63
52270051--52270133	25	3.3	25	86	5	114	72	0	26	1	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52270213--52270272	18	3.2	17	75	22	57	78	1	20	0	0.84
52270205--52270272	25	2.8	24	77	16	68	77	1	20	0	0.84
52270205--52270272	19	3.4	20	78	13	77	77	1	20	0	0.84
52270207--52270267	15	3.9	15	78	18	63	77	1	21	0	0.86
52277130--52277321	61	3.2	61	70	19	188	43	7	4	44	1.52
52277130--52277340	116	1.8	117	95	1	388	45	7	4	43	1.51
52277300--52277384	30	2.8	29	76	20	100	45	7	4	42	1.52
52277300--52277401	34	3.1	34	81	15	128	49	6	4	39	1.51
52277523--52277566	21	2.1	21	86	0	61	6	25	40	27	1.80
52279591--52279644	18	2.9	18	75	5	63	61	0	7	31	1.24
52279591--52279644	19	2.9	18	74	15	56	61	0	7	31	1.24
52284761--52284789	9	3.2	9	100	0	58	41	0	0	58	0.98
52288591--52289885	44	28.8	44	71	12	612	27	21	19	31	1.97
52288569--52289058	227	2.2	227	91	0	784	27	20	19	31	1.97
52289026--52289094	36	1.9	36	90	0	111	27	20	23	28	1.99
52289062--52290068	227	4.4	227	89	0	1480	27	21	19	30	1.98
52288589--52289548	490	2.0	490	91	0	1555	27	21	19	31	1.97
52298654--52298693	15	3.0	13	83	16	55	60	2	0	37	1.11
52300677--52300710	3	11.3	3	87	0	50	58	2	2	35	1.28
52300677--52300732	15	3.7	15	79	9	60	57	3	8	30	1.47
52305625--52305679	28	2.0	27	82	10	67	34	0	0	65	0.93
52305653--52305677	6	4.2	6	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52307403--52307442	20	2.0	20	95	0	71	25	7	5	62	1.42
52322547--52322604	26	2.2	26	84	0	71	29	17	13	39	1.88
52322729--52322772	23	1.9	23	95	0	79	11	20	25	43	1.85
52323917--52323974	26	2.2	26	78	0	62	25	15	18	39	1.91
52324351--52324389	12	3.2	12	77	0	51	7	15	0	76	0.99
52332937--52332987	21	2.5	20	84	12	61	52	29	3	13	1.58
52333978--52334018	18	2.3	19	83	12	59	24	9	0	65	1.22
52334041--52334090	3	16.7	3	85	0	64	32	4	2	62	1.25
52336567--52336604	13	2.8	13	85	14	51	39	0	0	60	0.97
52337551--52337589	18	2.2	18	85	0	51	30	33	0	35	1.58
52350510--52350753	46	5.3	46	87	1	346	41	17	14	27	1.88
52350520--52350753	22	10.2	23	73	16	175	41	17	14	27	1.87
52350510--52350753	91	2.7	92	87	1	346	41	17	14	27	1.88
52351070--52351107	18	2.1	18	100	0	76	47	15	15	21	1.82
52355144--52355180	15	2.7	15	88	12	53	0	16	0	83	0.64
52357137--52357203	3	23.3	3	75	22	56	29	4	1	64	1.22
52365013--52365060	19	2.4	21	83	10	66	45	14	0	39	1.45
52365208--52365604	193	2.1	190	84	5	514	48	4	2	44	1.38
52365645--52365681	15	2.2	18	81	18	53	59	0	2	37	1.12
52365943--52366030	44	2.0	44	95	0	158	36	17	14	31	1.90
52367215--52367292	31	2.5	31	83	2	95	46	3	19	30	1.68
52373415--52373525	40	2.8	39	86	4	150	34	18	26	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52377897--52378013	27	4.3	28	81	4	125	44	19	16	19	1.87
52378177--52378230	26	2.1	26	96	0	99	14	20	27	37	1.92
52378316--52378383	28	2.4	28	87	0	100	26	27	19	26	1.99
52380712--52380744	7	4.7	7	85	14	50	12	0	0	87	0.53
52380712--52380743	13	2.4	14	94	5	57	12	0	0	87	0.54
52380719--52380794	14	5.4	14	79	13	59	3	14	0	81	0.83
52380712--52380751	21	1.9	21	89	0	62	10	5	0	85	0.75
52380739--52380794	8	6.6	8	79	18	51	0	19	0	80	0.71
52380739--52380794	16	3.4	16	83	11	60	0	19	0	80	0.71
52380756--52380791	18	1.9	18	88	5	54	0	19	0	80	0.71
52380758--52380794	13	2.8	13	91	4	56	0	18	0	81	0.70
52381478--52381536	29	2.1	28	87	3	82	33	10	20	35	1.86
52381804--52382908	75	14.6	75	87	3	1486	32	20	18	27	1.96
52381804--52382913	452	2.5	451	87	2	1548	33	20	18	27	1.96
52395005--52395080	21	3.4	21	82	10	80	1	17	1	80	0.85
52395014--52395078	7	8.9	7	85	8	85	1	16	0	81	0.77
52395005--52395080	22	3.3	23	78	14	77	1	17	1	80	0.85
52395006--52395080	7	9.9	8	82	7	70	1	16	1	81	0.83
52395269--52395307	12	3.3	12	82	3	53	0	25	0	74	0.82
52395265--52395308	19	2.4	18	80	3	52	0	25	0	75	0.81
52401779--52401839	29	2.1	29	87	6	88	37	31	21	9	1.86
52403004--52403143	71	1.9	72	82	2	174	24	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52405127--52405168	22	1.9	22	90	9	68	21	35	0	42	1.53
52415150--52415232	42	2.0	43	87	2	123	34	21	20	22	1.96
52415155--52415294	43	3.3	43	78	6	133	31	23	20	24	1.98
52431596--52431662	30	2.2	31	81	10	75	47	11	2	37	1.56
52433465--52433521	20	2.9	21	79	7	57	61	3	0	35	1.13
52435524--52435568	18	2.5	17	79	10	54	57	2	2	37	1.23
52435613--52435665	26	2.1	25	85	3	70	64	3	3	28	1.28
52440954--52440983	16	1.9	15	93	6	51	40	16	16	26	1.90
52440918--52441071	75	2.1	75	89	0	236	44	6	19	29	1.76
52444450--52444485	7	5.1	7	89	0	54	41	41	2	13	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199