genome.fa.s18.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  93  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31915848--31915891	19	2.1	20	84	16	54	61	4	0	34	1.16
31915848--31915891	20	2.0	23	83	12	58	61	4	0	34	1.16
31917307--31917359	19	2.6	21	82	11	74	39	0	0	60	0.97
31919092--31919156	22	3.0	22	75	8	60	15	26	20	38	1.92
31919898--31919927	2	15.0	2	100	0	60	50	0	0	50	1.00
31920036--31920073	20	1.9	20	84	10	51	50	5	5	39	1.48
31920641--31920689	16	2.9	16	81	6	53	77	2	16	4	1.01
31924262--31924334	5	14.6	5	97	0	92	47	19	0	32	1.49
31925407--31925431	5	5.0	5	100	0	50	80	0	0	20	0.72
31925626--31925654	1	29.0	1	100	0	58	100	0	0	0	0.00
31925928--31926012	36	2.4	36	76	4	82	61	9	7	22	1.51
31927317--31927370	26	2.0	27	82	3	65	31	0	3	64	1.11
31930633--31930686	26	2.0	27	82	3	65	33	0	3	62	1.12
31932185--31932243	20	2.9	21	85	9	70	40	1	1	55	1.20
31932513--31932561	22	2.3	20	86	13	71	73	4	0	22	1.00
31934150--31934192	17	2.6	16	82	10	59	30	4	0	65	1.13
31934150--31934194	18	2.6	18	83	16	60	31	4	0	64	1.13
31934152--31934201	25	2.0	26	88	4	75	32	4	0	64	1.12
31939544--31939601	25	2.3	24	82	8	62	46	0	3	50	1.18
31939424--31939626	88	2.3	91	89	3	313	45	2	4	46	1.37
31939631--31939843	56	3.6	57	69	20	152	40	3	4	51	1.39
31939680--31939880	66	3.2	64	68	19	188	40	3	6	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31939780--31939820	15	2.8	15	82	10	50	43	0	2	53	1.13
31939642--31939941	122	2.5	121	91	3	498	42	2	5	49	1.40
31939885--31939919	18	2.0	17	88	5	52	45	0	0	54	0.99
31940165--31940221	16	3.6	16	92	0	78	33	35	0	31	1.58
31950682--31950778	3	33.0	3	71	6	65	27	5	1	65	1.20
31950682--31950722	19	2.2	18	86	4	55	31	4	0	63	1.15
31952671--31953028	109	3.4	107	83	9	415	37	14	16	31	1.89
31952751--31953030	110	2.6	108	87	6	413	37	14	16	31	1.88
31953323--31953374	20	2.5	21	81	9	63	40	1	1	55	1.22
31953323--31953366	21	2.1	22	87	8	65	40	2	2	54	1.25
31953323--31953381	20	3.0	19	81	13	59	38	1	1	57	1.19
31953653--31953697	19	2.4	19	77	7	56	73	4	2	20	1.11
31954940--31955068	63	2.0	63	93	0	222	35	18	21	24	1.95
31962758--31962937	72	2.5	71	82	4	220	26	5	12	56	1.57
31964952--31964976	13	1.9	13	100	0	50	40	28	8	24	1.83
31965615--31965657	23	1.9	22	90	4	68	46	6	0	46	1.30
31966004--31966067	34	2.0	34	84	9	89	45	4	0	50	1.22
31966018--31966073	17	3.5	16	79	11	62	44	1	0	53	1.11
31977121--31977169	18	2.7	18	87	0	80	24	6	22	46	1.74
31977121--31977169	9	5.4	9	90	0	71	24	6	22	46	1.74
31978945--31978998	25	2.1	26	89	3	83	37	12	14	35	1.85
31982775--31982969	41	4.7	41	75	2	158	32	16	25	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31982775--31982959	82	2.2	84	80	6	191	32	16	24	25	1.96
31983136--31983249	34	3.2	36	77	8	117	32	7	18	42	1.77
31983466--31983506	22	1.9	21	85	5	55	36	2	9	51	1.48
31985748--31985859	43	2.6	43	81	5	111	26	16	28	28	1.97
31986636--31987211	47	12.1	47	80	6	567	29	14	17	39	1.89
31986652--31987211	70	7.9	69	82	6	457	29	14	17	38	1.89
31986636--31987200	117	4.8	117	83	4	634	29	13	17	39	1.88
31990950--31990988	18	2.2	18	100	0	78	48	0	5	46	1.24
31992090--31992280	78	2.5	78	82	6	221	38	3	17	40	1.68
31995960--31995994	15	2.3	15	90	9	54	51	22	0	25	1.48
31996648--31996767	41	2.9	41	72	11	102	32	30	18	18	1.95
31996662--31996779	41	2.9	42	79	12	127	31	30	19	18	1.96
31996894--31997074	64	2.9	63	89	8	262	41	17	8	32	1.79
31998566--31998713	41	3.6	41	82	0	161	29	19	27	23	1.98
31998880--31998953	34	2.1	35	82	9	89	31	10	20	37	1.87
32005770--32005826	23	2.6	22	83	8	71	56	1	10	31	1.44
32005983--32006037	22	2.5	22	76	8	58	58	3	9	29	1.46
32013322--32013347	12	2.2	12	100	0	52	23	0	0	76	0.78
32017452--32017490	19	2.1	19	85	4	53	23	12	2	61	1.43
32020149--32020201	28	1.9	27	84	3	70	64	1	3	30	1.22
32020120--32020223	51	2.1	50	82	8	122	63	1	4	29	1.26
32020179--32020222	23	2.0	21	86	8	61	63	2	4	29	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32020249--32020304	3	18.7	3	81	7	51	62	8	1	26	1.35
32020878--32020916	15	2.6	15	88	8	53	87	2	7	2	0.73
32020877--32020916	10	3.9	10	90	3	53	85	2	10	2	0.80
32021321--32021345	13	1.9	13	100	0	50	32	8	20	40	1.81
32026561--32027098	119	4.7	113	89	7	670	51	5	0	42	1.29
32026561--32026954	119	3.3	119	98	0	761	52	4	0	42	1.26
32026719--32027140	221	1.9	220	95	1	756	51	5	1	41	1.32
32026949--32027135	61	3.1	61	68	9	184	52	6	1	39	1.37
32026938--32027122	59	3.1	59	68	22	177	51	6	1	40	1.37
32028531--32028634	49	2.1	49	94	0	181	50	10	7	31	1.65
32030766--32030831	33	2.0	33	96	0	123	39	4	16	39	1.69
32030766--32030819	18	3.2	18	66	15	51	35	3	18	42	1.68
32031293--32031328	15	2.5	15	86	4	56	58	5	8	27	1.50
32032763--32032807	20	2.3	20	96	3	83	57	20	4	17	1.56
32045478--32045663	50	3.7	50	79	3	198	26	23	28	21	1.99
32050341--32050390	24	2.1	24	85	7	66	50	6	2	42	1.38
32057720--32057758	4	9.8	4	94	0	69	48	23	2	25	1.63
32057824--32057865	4	10.5	4	94	0	75	50	21	0	28	1.49
32058095--32058124	9	3.4	9	95	4	53	16	0	0	83	0.65
32058449--32058480	17	1.9	17	93	6	57	62	0	0	37	0.95
32063274--32063310	9	4.1	9	92	0	65	29	10	13	45	1.77
32063364--32063394	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32082093--32082183	30	3.0	30	90	0	137	18	27	15	38	1.91
32101823--32102119	153	1.9	153	97	0	558	28	14	22	33	1.94
32102654--32102714	13	4.7	13	78	8	61	39	18	3	39	1.67
32102653--32102714	26	2.4	26	83	5	81	38	17	3	40	1.66
32103962--32104015	18	3.0	17	84	10	63	42	0	1	55	1.10
32103953--32104016	19	3.4	18	83	12	76	40	0	1	57	1.08
32115187--32115223	7	5.3	7	86	0	56	37	27	2	32	1.71
32115741--32115791	21	2.4	22	74	9	52	33	0	3	62	1.13
32118158--32118286	63	2.0	63	94	2	224	35	14	13	36	1.85
32119395--32119450	16	3.5	16	85	0	76	28	25	5	41	1.77
32123485--32123530	6	7.7	6	85	0	65	15	19	17	47	1.82
32130790--32130888	23	4.3	23	92	0	144	30	24	21	24	1.99
32130790--32130887	46	2.1	46	92	0	160	30	24	21	23	1.99
32136709--32136769	32	2.0	31	81	12	74	36	6	4	52	1.49
32144459--32144511	4	13.2	4	76	7	54	43	5	0	50	1.25
32144458--32144511	20	2.7	19	88	8	81	42	5	0	51	1.25
32144459--32144518	20	2.7	23	72	27	67	41	8	0	50	1.33
32144893--32144940	4	12.2	4	82	4	62	47	4	0	47	1.21
32144897--32144956	31	1.9	30	83	12	77	45	10	0	45	1.37
32145273--32145317	15	2.9	16	87	12	67	48	0	11	40	1.39
32145289--32145343	20	2.8	19	86	10	83	50	0	9	40	1.34
32148083--32148227	71	2.0	71	89	0	218	26	14	27	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32157874--32158117	129	1.9	129	96	0	452	35	15	11	38	1.83
32161801--32161849	4	12.5	4	79	16	50	71	2	2	24	1.07
32161800--32161848	12	4.3	11	82	17	64	69	2	2	26	1.10
32164025--32164067	20	2.0	20	82	8	50	41	16	2	39	1.61
32164700--32164761	29	2.1	29	82	5	72	29	14	4	51	1.63
32165161--32165198	18	2.1	18	85	9	51	31	2	2	63	1.22
32170140--32170233	11	9.1	11	72	18	69	24	30	0	44	1.54
32170143--32170245	51	2.0	52	94	1	181	25	31	0	43	1.55
32172063--32172106	18	2.4	18	84	0	52	18	25	9	47	1.77
32172398--32172806	114	3.6	115	88	5	562	43	14	16	24	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199