genome.fa.s18.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  160  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52636777--52636840	13	4.9	13	75	7	67	32	6	26	34	1.82
52639486--52639530	3	15.0	3	100	0	90	66	0	0	33	0.92
52640963--52641534	50	11.4	50	70	3	378	25	25	20	28	1.99
52640979--52641551	100	5.7	100	92	0	905	26	24	20	28	1.99
52641739--52642017	89	3.1	89	89	3	409	26	25	17	30	1.98
52641882--52642137	133	1.9	134	90	0	406	27	23	19	29	1.98
52641736--52642106	89	4.1	88	82	5	388	26	24	17	30	1.97
52641898--52642365	89	5.2	89	82	3	449	27	23	18	30	1.98
52641783--52642229	222	2.0	225	90	1	702	26	24	19	29	1.98
52641897--52642177	133	2.1	133	86	2	386	28	23	18	29	1.98
52642005--52642331	181	1.8	180	86	0	474	26	24	18	30	1.98
52641733--52642366	314	2.0	313	90	2	1004	26	24	18	30	1.98
52641786--52642366	44	13.0	44	72	6	434	26	24	19	30	1.98
52641786--52642366	89	6.5	89	84	2	445	26	24	19	30	1.98
52648687--52648741	3	18.3	3	100	0	110	67	0	0	32	0.91
52652609--52652650	16	2.6	16	92	0	66	33	0	35	30	1.58
52652895--52652929	18	2.0	17	88	5	52	54	0	0	45	0.99
52652782--52653079	154	1.9	156	95	2	546	44	3	5	47	1.41
52653038--52653171	15	8.9	15	68	22	77	51	3	2	42	1.32
52653078--52653294	120	1.8	117	88	6	330	50	5	3	40	1.45
52653255--52653293	17	2.5	15	80	15	51	51	0	5	43	1.24
52653260--52653293	17	2.0	17	94	0	59	50	0	5	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52653326--52653520	93	2.1	92	88	4	286	47	4	4	44	1.41
52654918--52654944	11	2.5	11	100	0	54	51	18	7	22	1.70
52657187--52657217	15	2.1	15	100	0	62	45	0	19	35	1.51
52679501--52679969	44	10.5	44	79	5	449	31	20	19	27	1.97
52683491--52683620	40	3.2	40	93	1	197	29	16	33	20	1.95
52683571--52684501	112	8.3	111	92	2	1511	28	18	26	25	1.98
52686209--52686405	84	2.3	84	92	0	313	34	20	18	27	1.96
52687609--52687648	11	3.7	11	96	3	73	37	10	25	27	1.88
52688990--52689261	17	14.6	17	72	22	174	45	11	1	41	1.51
52688981--52689305	57	5.6	57	93	2	544	44	11	1	42	1.50
52689230--52689321	44	2.1	44	95	0	166	41	9	2	46	1.49
52689278--52689359	13	6.3	13	72	9	69	41	8	2	47	1.47
52689501--52689790	71	4.1	72	96	2	541	50	1	6	41	1.37
52689603--52689711	31	3.2	31	67	22	83	50	0	5	43	1.31
52689501--52689790	143	2.0	143	96	2	539	50	1	6	41	1.37
52689784--52689825	19	2.2	20	91	4	68	45	0	0	54	0.99
52689843--52689921	18	4.4	18	71	25	78	46	18	0	34	1.50
52689824--52690180	26	14.1	25	92	4	549	47	20	0	32	1.51
52689824--52690180	51	7.0	51	93	3	573	47	20	0	32	1.51
52690121--52690208	18	4.4	18	70	25	61	45	20	0	34	1.51
52690172--52690225	9	5.7	10	79	20	55	42	20	0	37	1.52
52690146--52690211	18	3.6	18	84	10	89	46	18	0	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52695671--52695741	21	3.4	21	84	0	88	30	16	47	4	1.66
52696071--52696270	42	4.8	42	85	2	231	31	19	21	28	1.97
52696197--52696398	42	4.8	42	87	3	282	23	20	22	34	1.97
52696117--52696398	126	2.2	126	80	2	289	27	19	21	31	1.97
52696851--52696901	17	2.7	19	79	17	61	39	19	15	25	1.91
52697203--52697276	29	2.5	29	82	4	85	24	13	13	48	1.78
52700282--52700314	15	2.2	15	94	0	57	24	0	12	63	1.28
52712216--52713271	84	12.3	86	70	13	526	29	19	22	28	1.98
52712219--52712588	125	2.9	127	84	7	439	28	18	23	29	1.97
52712203--52713276	342	3.1	342	92	1	1740	29	19	21	28	1.98
52712645--52712930	126	2.3	127	88	3	425	30	19	20	29	1.97
52712993--52713271	128	2.2	128	90	0	432	29	20	21	28	1.98
52712216--52713271	44	24.6	43	71	11	596	29	19	22	28	1.98
52719230--52719285	23	2.6	21	83	13	69	58	1	0	39	1.08
52722456--52722498	22	2.0	22	85	0	59	11	13	27	46	1.78
52722575--52722914	83	4.1	84	90	3	524	32	21	20	25	1.97
52722575--52723004	42	10.2	42	86	4	532	31	21	20	26	1.98
52723436--52723504	21	3.3	21	85	0	93	1	42	20	36	1.61
52729008--52729149	9	16.0	9	83	5	182	34	0	20	44	1.57
52729031--52729149	45	2.6	45	94	0	211	34	0	18	46	1.55
52729126--52729227	39	2.6	39	90	3	150	42	0	12	44	1.49
52729207--52729250	23	1.9	23	95	0	79	38	0	18	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52729121--52729235	39	2.9	39	80	6	106	43	0	13	42	1.49
52729294--52729369	27	2.9	27	94	2	127	43	10	5	40	1.62
52729249--52729595	90	4.0	89	93	4	559	43	8	6	41	1.62
52729384--52729459	27	2.9	27	96	2	136	44	10	3	40	1.57
52729474--52729595	27	4.6	27	83	10	162	45	9	5	39	1.61
52729474--52729595	53	2.3	54	88	8	180	45	9	5	39	1.61
52729607--52729658	13	4.0	13	77	5	52	44	1	9	44	1.48
52731280--52731308	11	2.7	11	94	5	51	68	0	3	27	1.05
52731738--52731779	19	2.2	19	86	0	57	19	2	50	28	1.60
52732281--52732509	74	3.1	74	66	13	209	37	23	13	24	1.92
52732220--52732599	147	2.6	147	96	0	697	37	23	13	25	1.91
52733347--52733405	23	2.5	24	74	20	61	38	33	1	25	1.66
52733689--52733846	72	2.2	74	79	6	171	28	24	19	27	1.99
52733911--52734048	73	1.9	70	82	7	170	25	23	25	26	2.00
52744580--52744655	32	2.4	32	84	2	91	39	5	3	51	1.43
52747970--52748053	36	2.2	36	83	12	96	10	13	5	70	1.33
52748007--52748070	30	2.1	30	85	0	83	9	4	6	79	1.04
52748003--52748073	36	2.0	35	86	2	97	9	4	7	78	1.06
52756047--52756093	23	2.0	23	83	4	58	36	6	19	38	1.77
52756549--52756583	16	2.3	15	90	5	52	25	0	0	74	0.82
52756615--52756658	23	1.9	23	85	0	61	36	9	9	45	1.68
52760790--52760896	24	4.4	23	69	24	76	30	4	2	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52763230--52763268	10	3.7	10	83	12	51	33	0	5	61	1.18
52771712--52771737	12	2.2	12	100	0	52	15	15	23	46	1.83
52771844--52772335	113	4.3	114	81	4	542	31	18	20	28	1.97
52771870--52772324	230	2.0	226	84	1	595	31	19	20	28	1.97
52772535--52772591	27	2.1	27	83	6	71	17	0	35	47	1.48
52772568--52772599	14	2.2	15	94	5	57	25	0	31	43	1.55
52772748--52772833	14	6.1	14	74	8	77	22	0	29	48	1.50
52772748--52772802	27	2.0	27	86	6	76	16	0	34	49	1.46
52772751--52772802	7	7.7	7	80	4	54	15	0	36	48	1.45
52772989--52773018	15	2.0	15	93	0	51	63	3	0	33	1.11
52773231--52773268	20	1.9	20	100	0	76	31	0	7	60	1.25
52773925--52773969	17	2.5	19	82	10	58	26	44	0	28	1.55
52775209--52775260	27	2.0	26	81	11	61	36	1	7	53	1.41
52775341--52775420	9	8.6	9	77	8	79	47	16	1	35	1.55
52775318--52775443	48	2.6	48	96	0	225	45	14	3	37	1.61
52775336--52775424	18	5.3	18	76	21	104	46	14	1	38	1.52
52775454--52775493	19	2.2	19	86	8	57	45	2	20	32	1.64
52775454--52775503	17	2.9	17	80	13	57	44	2	20	34	1.63
52776776--52776804	14	2.1	14	93	6	51	34	0	10	55	1.34
52777545--52777742	43	4.6	43	68	14	124	30	20	21	27	1.98
52777518--52777749	86	2.7	86	77	2	207	34	21	20	24	1.97
52778247--52778312	32	2.1	32	85	5	89	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52779923--52780004	28	3.0	28	76	3	94	29	17	14	39	1.89
52781207--52781232	6	4.3	6	100	0	52	34	0	0	65	0.93
52804383--52804429	24	2.0	24	91	8	78	19	31	12	36	1.89
52813753--52814012	131	2.0	131	86	4	364	23	18	21	36	1.94
52823782--52823817	15	2.4	16	90	9	58	72	2	0	25	0.98
52823813--52823883	30	2.4	30	85	4	90	30	21	4	43	1.71
52824251--52824288	18	2.1	18	95	0	67	55	39	0	5	1.23
52824455--52824486	16	2.0	16	93	0	55	84	12	3	0	0.74
52824455--52824512	21	2.7	21	84	10	73	75	10	10	3	1.15
52825147--52825194	17	2.8	17	76	23	55	31	16	10	41	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199