genome.fa.s18.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  192  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60988620--60988672	20	2.8	19	81	13	65	22	3	1	71	1.12
60992631--60992705	29	2.5	28	81	12	80	64	5	0	30	1.16
60992558--60992692	19	7.2	18	70	17	80	60	5	1	32	1.30
60992584--60992693	57	1.9	57	81	9	134	60	6	0	32	1.22
60993183--60993344	86	1.9	86	93	0	279	24	19	11	45	1.83
60993609--60993643	17	2.0	18	88	5	54	54	11	5	28	1.59
61019772--61019814	22	2.0	22	90	0	68	32	0	0	67	0.91
61020411--61020483	28	2.6	27	77	10	76	47	27	1	23	1.59
61028141--61028168	13	2.2	13	100	0	56	60	7	0	32	1.24
61029805--61030192	132	2.9	132	91	3	611	28	24	16	30	1.97
61029826--61030497	132	5.1	132	87	5	466	28	24	17	29	1.97
61029991--61030365	176	2.1	176	94	0	651	28	25	16	28	1.97
61029860--61030500	308	2.1	308	93	0	1086	28	25	17	29	1.97
61030167--61030991	132	6.3	132	92	1	1309	27	24	18	29	1.98
61029860--61030627	308	2.5	305	86	5	913	27	25	17	29	1.97
61030343--61030712	88	4.2	87	69	15	233	27	24	18	30	1.98
61030683--61030879	44	4.5	44	65	21	117	25	26	18	29	1.98
61030980--61031273	46	6.4	46	91	0	471	31	25	15	27	1.96
61032478--61032531	6	8.7	6	76	15	56	0	22	0	77	0.76
61032473--61032533	14	4.1	15	78	19	74	0	26	0	73	0.83
61032479--61032535	18	3.1	17	79	20	62	0	21	0	78	0.74
61032473--61032531	31	2.0	29	90	6	91	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61037125--61037158	6	5.3	6	86	13	50	35	0	17	47	1.48
61039505--61039621	61	1.9	61	85	3	164	23	28	17	29	1.97
61040924--61040952	2	14.5	2	100	0	58	51	0	0	48	1.00
61042727--61042932	45	4.6	44	78	10	179	27	19	13	40	1.88
61046536--61046693	49	3.2	49	81	0	145	35	16	18	29	1.93
61046759--61046902	34	4.3	33	76	12	132	41	15	13	29	1.85
61047966--61047994	14	2.0	15	93	6	51	62	0	17	20	1.33
61049438--61049474	9	4.1	9	89	0	56	45	10	10	32	1.74
61051933--61052149	107	2.0	106	91	2	346	33	18	17	30	1.94
61052584--61052689	29	3.6	29	82	5	122	35	16	3	44	1.65
61053397--61053469	25	2.9	24	79	16	76	32	2	1	63	1.17
61053497--61053528	3	10.7	3	100	0	64	34	0	0	65	0.93
61057296--61057326	11	2.8	11	95	0	53	29	3	48	19	1.64
61061366--61061458	18	5.2	18	90	0	141	31	15	24	29	1.95
61061364--61061458	36	2.6	36	93	0	163	30	15	24	29	1.96
61062002--61062032	11	2.8	11	95	0	53	29	3	48	19	1.64
61064400--61064426	13	2.1	13	100	0	54	48	14	0	37	1.45
61072260--61072309	20	2.5	19	87	6	64	6	24	0	70	1.10
61075127--61075190	10	6.8	9	77	10	56	60	6	0	32	1.21
61075127--61075190	19	3.4	19	78	8	60	60	6	0	32	1.21
61075128--61075189	29	2.1	28	82	11	72	62	6	0	30	1.20
61075081--61075190	57	1.9	57	82	10	136	60	7	0	32	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61076822--61076869	7	6.7	7	78	21	55	39	29	0	31	1.57
61081277--61081310	15	2.2	16	89	5	52	32	2	0	64	1.08
61082983--61083009	6	4.5	6	100	0	54	14	0	0	85	0.61
61083403--61083443	16	2.6	16	88	7	57	39	2	0	58	1.11
61083397--61083444	18	2.5	20	86	6	64	39	2	0	58	1.10
61083401--61083469	20	3.8	18	79	11	70	40	7	0	52	1.29
61083480--61083515	18	2.0	18	88	0	54	41	8	5	44	1.58
61083728--61083754	4	6.8	4	100	0	54	0	0	22	77	0.76
61086036--61086174	70	2.0	70	94	0	242	31	23	7	37	1.83
61086777--61086818	20	2.1	20	100	0	84	35	23	11	28	1.91
61088926--61088974	18	2.7	19	78	9	57	18	4	6	71	1.23
61092970--61092998	10	2.7	11	89	10	51	79	0	20	0	0.74
61093305--61093603	97	2.9	100	84	7	388	26	16	9	48	1.76
61093402--61093603	108	1.9	108	90	0	323	26	16	9	48	1.76
61094489--61095381	46	19.4	46	88	0	1214	26	15	27	31	1.95
61097329--61097377	18	2.7	19	78	9	57	18	4	6	71	1.23
61101727--61101769	16	2.7	16	85	7	52	76	2	13	6	1.08
61102069--61102367	97	2.9	100	82	8	345	25	17	9	48	1.76
61102166--61102367	108	1.9	108	88	2	307	24	16	9	49	1.75
61103253--61104465	46	26.4	46	89	0	1714	26	15	27	30	1.96
61108677--61108710	12	2.8	12	81	0	50	44	23	23	8	1.81
61111440--61111572	45	3.0	44	77	9	139	24	17	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61111458--61111609	41	3.5	45	77	12	142	25	17	28	28	1.98
61113902--61113935	14	2.4	14	95	5	59	32	5	20	41	1.76
61117964--61118262	97	2.9	100	85	7	397	26	16	8	48	1.75
61118061--61118262	108	1.9	108	90	0	323	25	16	8	49	1.75
61119146--61119946	46	17.4	46	89	1	1142	25	14	27	31	1.95
61121903--61121951	18	2.7	19	84	9	66	16	4	6	73	1.19
61124435--61124554	62	1.9	62	84	0	159	20	26	20	33	1.97
61125661--61125734	34	2.2	34	95	0	130	45	13	18	21	1.84
61126143--61126178	17	2.1	17	94	0	63	41	11	22	25	1.86
61127624--61127710	45	1.9	45	95	0	156	34	6	19	39	1.79
61127675--61127748	36	2.1	35	85	9	98	31	6	22	39	1.80
61132176--61132292	49	2.4	49	82	0	144	33	13	19	33	1.91
61132209--61132329	49	2.5	49	83	2	136	36	14	18	30	1.91
61132396--61132539	34	4.3	33	74	12	123	41	13	13	31	1.82
61136426--61136471	24	1.9	24	100	0	92	54	15	4	26	1.59
61136432--61136483	24	2.2	24	82	6	61	59	11	5	23	1.53
61142730--61142805	11	6.9	11	84	10	93	25	32	0	42	1.55
61144613--61144654	18	2.3	18	87	0	57	19	28	7	45	1.76
61144906--61144945	21	1.9	21	84	0	53	30	40	20	10	1.85
61145063--61145141	34	2.2	36	93	4	135	41	3	3	50	1.38
61145138--61145451	58	5.4	57	69	20	220	42	4	7	45	1.51
61145124--61145451	116	2.8	116	94	0	575	42	4	7	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61148404--61148817	126	3.3	126	87	3	600	27	20	16	35	1.94
61148816--61149182	102	3.8	96	76	16	314	37	18	3	40	1.67
61148849--61149199	95	3.7	94	78	11	290	37	20	3	39	1.68
61150392--61150464	29	2.4	30	72	14	71	21	12	9	56	1.64
61162807--61162895	12	6.7	13	71	18	67	53	1	3	41	1.24
61162744--61162905	82	2.0	79	89	3	243	54	2	3	38	1.31
61162758--61162905	30	5.3	30	75	13	131	54	2	4	39	1.34
61162768--61162892	42	3.0	42	69	17	116	54	3	3	39	1.33
61165177--61165229	15	3.3	16	73	17	56	37	0	7	54	1.29
61165319--61165359	19	2.1	20	90	4	66	31	0	0	68	0.90
61166363--61166418	20	2.9	19	77	15	60	37	1	1	58	1.19
61167125--61167226	50	2.0	52	83	7	129	27	38	15	18	1.91
61168218--61168259	3	14.0	3	100	0	84	33	0	0	66	0.92
61170084--61170244	85	1.9	86	87	3	236	22	26	22	27	1.99
61170084--61170457	43	8.8	42	83	5	222	22	28	22	26	1.99
61170080--61170438	86	4.2	85	82	6	338	23	28	21	25	1.99
61170208--61170438	84	2.7	86	87	4	317	24	30	20	24	1.99
61170169--61170438	43	6.3	43	84	3	307	23	30	20	25	1.99
61170571--61170600	14	2.1	14	100	0	60	53	33	0	13	1.40
61170808--61170862	21	2.6	21	75	11	58	7	41	18	32	1.78
61170913--61170963	21	2.4	21	86	0	66	5	41	17	35	1.74
61170850--61171029	87	2.1	87	88	4	265	12	29	18	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61172366--61172400	18	2.0	17	88	5	52	71	0	0	28	0.86
61176912--61176951	14	2.9	14	96	0	71	40	0	5	55	1.22
61178467--61178497	16	1.9	16	93	0	53	32	6	25	35	1.82
61179088--61179129	14	2.8	15	85	7	50	50	4	4	40	1.45
61179470--61179523	20	2.7	20	76	0	54	40	38	3	16	1.66
61181173--61181404	113	2.1	113	92	0	383	29	21	22	25	1.99
61181391--61181531	40	3.5	40	76	8	119	18	19	23	39	1.93
61182263--61182315	21	2.5	21	96	0	97	30	35	9	24	1.87
61183808--61183849	19	2.3	18	88	8	66	57	0	4	38	1.20
61183849--61183908	25	2.4	23	84	15	68	66	3	0	30	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199