genome.fa.s18.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  99  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33891165--33891214	24	2.0	25	92	3	84	58	14	2	26	1.47
33891175--33891220	24	2.0	24	86	4	67	58	15	2	23	1.48
33903036--33903060	3	8.3	3	100	0	50	32	0	0	68	0.90
33907770--33907796	6	4.5	6	100	0	54	70	14	14	0	1.17
33911667--33911700	17	1.9	17	94	5	59	70	17	5	5	1.28
33911735--33911791	27	2.1	27	96	0	105	33	26	28	12	1.92
33912214--33912276	19	3.3	19	68	0	63	46	3	9	41	1.52
33912886--33912963	27	2.9	27	80	3	95	19	21	34	24	1.96
33913028--33913064	16	2.4	16	90	4	58	59	5	2	32	1.34
33913284--33913557	8	33.8	8	68	23	94	54	13	0	31	1.39
33913287--33913730	19	23.3	19	68	22	181	55	12	0	31	1.38
33913287--33913567	27	10.8	27	82	10	370	54	13	0	31	1.40
33913276--33913647	54	6.9	54	70	23	229	55	13	0	31	1.39
33913334--33913380	23	2.0	23	91	0	76	57	17	0	25	1.40
33913300--33913567	77	3.4	77	92	6	403	55	13	0	30	1.39
33913541--33913733	80	2.4	80	94	0	332	56	11	0	31	1.34
33913599--33913763	19	8.0	21	67	23	82	55	10	0	33	1.34
33913705--33913757	27	2.0	27	92	0	88	52	11	0	35	1.37
33915123--33915402	46	6.6	45	85	9	312	34	13	22	29	1.93
33915159--33915267	36	3.0	36	94	0	182	36	11	21	30	1.89
33915187--33915252	21	3.5	20	63	25	52	34	12	19	33	1.89
33916816--33916873	27	2.1	27	90	0	89	18	27	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33916816--33916882	27	2.5	26	83	9	80	19	29	20	29	1.97
33916908--33916941	17	1.9	18	94	5	61	8	5	14	70	1.31
33916946--33917008	27	2.4	27	89	2	92	47	1	12	38	1.51
33918493--33918538	20	2.3	20	85	14	69	30	2	0	67	1.03
33919494--33919701	103	2.0	105	85	1	285	44	9	21	25	1.81
33919938--33920130	60	3.0	64	77	11	182	41	13	17	27	1.87
33920004--33920136	60	2.2	60	86	2	187	42	15	17	24	1.88
33938888--33939025	56	2.3	60	85	10	187	21	25	22	31	1.98
33942219--33942276	20	2.9	20	72	10	55	50	20	20	8	1.75
33946206--33946285	33	2.5	32	80	10	90	13	38	26	21	1.90
33947930--33948108	50	3.6	50	89	0	259	21	30	21	26	1.98
33952870--33952899	15	2.0	15	93	0	51	23	3	6	66	1.30
33954941--33955208	45	5.9	45	87	3	297	21	19	15	43	1.87
33954948--33955276	45	7.3	44	81	7	222	22	19	15	42	1.88
33960798--33960850	27	2.0	27	100	0	106	49	11	7	32	1.67
33961023--33961155	60	2.2	61	80	7	146	41	12	5	41	1.64
33961799--33962007	56	4.0	52	83	7	226	24	13	21	40	1.89
33961890--33962007	50	2.3	52	89	2	177	26	17	15	40	1.89
33967303--33967386	6	14.2	6	77	5	82	47	1	15	35	1.53
33967589--33967621	12	2.8	12	95	0	57	39	0	27	33	1.57
33967626--33967665	17	2.4	17	95	0	71	57	0	5	37	1.21
33967639--33967677	18	2.2	17	86	4	51	64	0	5	30	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33971238--33971285	3	16.0	3	82	0	60	58	6	0	35	1.23
33971239--33971287	18	2.7	18	93	0	80	55	8	0	36	1.30
33971238--33971285	12	4.0	12	91	0	69	58	6	0	35	1.23
33971991--33972030	20	2.0	20	85	9	55	2	15	5	77	1.04
33972161--33972228	31	2.3	28	78	9	73	41	2	1	54	1.24
33972207--33972245	21	1.9	20	84	5	51	46	2	0	51	1.14
33974888--33975122	87	2.7	88	84	5	280	57	11	5	24	1.55
33975027--33975096	32	2.2	31	76	16	72	64	12	2	20	1.40
33982130--33982159	3	10.0	3	100	0	60	66	0	0	33	0.92
33982683--33982716	16	2.1	16	100	0	68	58	29	0	11	1.33
33983511--33983551	20	2.0	20	85	9	55	36	0	2	60	1.10
33983542--33983602	29	2.1	29	87	6	88	54	3	0	42	1.17
33985452--33985830	42	9.0	42	86	3	521	31	19	24	24	1.98
33985452--33985830	127	3.0	125	89	2	560	31	19	24	24	1.98
33986266--33986293	12	2.3	12	100	0	56	7	42	10	39	1.67
33986278--33986343	21	3.1	21	88	0	87	4	45	18	31	1.69
33991858--33992146	9	32.8	9	71	18	198	31	2	20	46	1.62
33991847--33992094	71	3.5	69	75	14	181	33	1	19	45	1.60
33991889--33992117	16	13.7	16	70	15	72	31	1	19	46	1.60
33991970--33992008	19	2.1	19	85	9	53	30	0	17	51	1.46
33991862--33992146	25	10.8	25	72	20	192	31	2	20	46	1.62
33991847--33992146	34	8.8	34	71	16	171	32	2	19	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33992220--33992274	16	3.7	16	69	18	55	34	1	18	45	1.60
33992222--33992291	28	2.5	28	88	2	104	35	2	17	44	1.63
33992478--33992510	13	2.5	13	95	0	57	45	6	12	36	1.66
33997153--33997244	40	2.3	40	90	0	139	22	31	16	29	1.96
33997155--33997226	23	3.4	23	61	21	57	20	33	18	27	1.96
33997878--33997935	30	2.0	29	83	10	73	22	36	0	41	1.54
33999898--33999942	23	2.0	22	82	4	54	64	0	0	35	0.94
33999946--34000007	9	6.7	9	72	7	52	32	1	43	22	1.63
34000957--34000995	14	2.8	14	84	0	51	43	10	15	30	1.80
34004954--34004986	12	2.8	12	90	0	57	39	0	6	54	1.25
34006356--34006381	8	3.2	8	100	0	52	23	11	0	65	1.25
34019080--34019118	17	2.3	17	100	0	78	46	15	12	25	1.81
34020592--34020726	69	2.0	68	85	7	184	41	2	4	51	1.37
34023911--34023970	26	2.3	26	91	0	93	41	13	8	36	1.74
34031630--34031689	26	2.3	26	88	0	84	41	11	8	38	1.72
34032541--34032585	23	1.9	24	86	4	65	26	48	0	24	1.51
34033491--34033518	13	2.2	13	100	0	56	64	0	14	21	1.29
34034488--34034546	26	2.3	26	81	0	73	20	23	16	38	1.92
34035074--34035115	22	1.9	22	85	0	57	9	16	28	45	1.79
34035180--34035279	43	2.3	43	87	0	137	28	31	21	20	1.98
34035178--34035319	43	3.3	43	81	3	135	28	29	19	22	1.98
34035440--34035468	7	4.1	7	100	0	58	41	13	0	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34037360--34037390	15	2.1	15	100	0	62	6	32	16	45	1.72
34041340--34041364	13	1.9	13	100	0	50	44	0	0	56	0.99
34041644--34041675	14	2.3	14	94	0	55	31	43	3	21	1.68
34041785--34041822	7	5.4	7	87	0	58	34	47	0	18	1.49
34041812--34041925	54	2.1	56	90	6	180	48	20	0	31	1.50
34041961--34042001	21	2.0	21	85	0	55	31	41	0	26	1.56
34042098--34042132	14	2.5	14	95	0	61	42	28	0	28	1.56
34042106--34042140	14	2.5	14	90	0	52	45	25	0	28	1.54
34042463--34042737	41	6.7	41	81	0	325	28	29	18	24	1.98
34042463--34042740	82	3.4	82	91	1	441	28	29	18	24	1.98
34044544--34044586	16	2.9	15	86	13	54	46	0	2	51	1.13
34050639--34050690	18	2.9	18	88	0	68	32	0	15	51	1.43
34050639--34050681	6	7.2	6	81	0	50	34	0	11	53	1.37
34055578--34055625	21	2.3	21	85	0	69	45	12	20	20	1.83
34068516--34068556	20	2.1	20	86	4	57	48	0	7	43	1.30
34076872--34076916	21	2.1	21	87	0	63	53	13	2	31	1.52
34080531--34080779	50	4.8	50	85	4	284	20	29	24	25	1.99
34080530--34080779	100	2.4	104	88	6	357	20	29	24	25	1.99
34080874--34080905	13	2.5	13	94	0	55	56	12	0	31	1.37
34084863--34084892	12	2.5	12	94	0	51	10	43	20	26	1.83
34088379--34089913	769	2.0	765	99	0	3025	33	15	20	31	1.93
34091667--34091707	20	2.0	21	95	4	75	53	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34102615--34102676	29	2.1	30	84	3	81	56	14	3	25	1.53
34102710--34102736	14	1.9	14	100	0	54	51	14	11	22	1.73
34105608--34105638	15	2.1	15	93	0	53	74	3	16	6	1.16
34110155--34110226	25	2.9	25	89	2	101	19	26	19	34	1.96
34112229--34112262	4	8.5	4	100	0	68	50	23	0	26	1.50
34114018--34114048	15	2.1	15	93	0	53	74	3	16	6	1.16
34117114--34117151	6	6.3	6	100	0	76	68	0	0	31	0.90
34120384--34120412	14	2.0	15	93	6	51	31	0	6	62	1.22
34122210--34122234	6	4.2	6	100	0	50	0	20	32	48	1.50
34127014--34127068	23	2.4	23	80	19	71	25	30	1	41	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199