genome.fa.s18.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  83  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29537903--29537945	21	2.0	21	86	8	61	32	6	18	41	1.77
29541322--29541365	23	1.9	23	86	9	63	18	2	50	29	1.59
29542555--29542809	27	9.3	27	81	7	219	43	17	16	22	1.87
29542579--29542796	55	4.0	55	85	3	269	44	16	15	23	1.85
29558810--29558851	17	2.4	18	84	11	61	40	9	0	50	1.35
29568079--29568113	15	2.2	17	90	10	56	5	0	45	48	1.26
29568600--29568771	92	1.9	91	81	2	211	28	18	20	32	1.96
29575505--29575594	41	2.2	41	94	3	157	38	11	20	30	1.87
29579942--29580005	19	3.4	19	70	8	67	32	15	15	35	1.90
29579934--29580009	38	2.0	38	100	0	152	31	21	15	31	1.94
29582117--29582148	16	1.9	17	93	6	57	37	21	0	40	1.54
29582309--29582465	43	3.7	43	79	8	162	29	28	19	22	1.98
29582309--29582466	84	1.9	84	83	7	205	30	28	18	22	1.98
29584051--29584108	27	2.1	27	96	0	107	53	0	6	39	1.28
29584064--29584127	29	2.3	27	84	10	76	48	3	10	37	1.54
29586075--29586106	15	2.2	14	94	5	55	0	0	46	53	1.00
29586075--29586106	7	4.4	7	92	7	55	0	0	46	53	1.00
29592570--29592652	45	1.9	42	80	11	96	31	2	3	62	1.25
29592842--29592872	14	2.1	15	94	5	55	29	0	0	70	0.87
29593087--29593131	16	2.7	17	79	6	56	33	0	4	62	1.15
29602807--29602859	23	2.4	22	76	20	56	9	18	1	69	1.25
29611728--29611780	22	2.3	25	81	18	62	32	0	5	62	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29613492--29613537	25	1.9	23	86	8	65	73	0	8	17	1.07
29615073--29615261	41	4.6	41	86	2	159	23	25	20	30	1.98
29615111--29615263	41	3.7	41	90	1	227	22	28	20	28	1.99
29615111--29615281	41	4.2	41	84	4	202	23	27	19	28	1.99
29617882--29617906	5	5.0	5	100	0	50	0	0	40	60	0.97
29618133--29618373	51	4.8	51	76	9	228	31	17	15	35	1.92
29618104--29618373	147	1.8	146	83	7	359	32	17	15	34	1.92
29618148--29618406	51	5.3	48	73	15	178	30	18	14	35	1.91
29618189--29618408	96	2.3	97	85	7	331	29	18	15	36	1.91
29618412--29618547	44	3.1	44	84	4	159	30	20	17	31	1.96
29618492--29618705	112	1.9	110	84	6	281	34	16	16	32	1.92
29618660--29618837	44	4.0	44	81	4	214	28	19	19	33	1.96
29627323--29627437	25	4.6	24	71	13	81	26	22	17	33	1.96
29628717--29628756	10	4.0	10	93	0	62	22	0	25	52	1.47
29629519--29629563	19	2.3	20	88	7	67	44	6	22	26	1.77
29632283--29632325	22	1.9	22	90	4	68	25	0	0	74	0.82
29638806--29638845	19	2.0	21	90	9	66	42	0	0	57	0.98
29648034--29648081	19	2.5	19	100	0	96	43	12	0	43	1.42
29648138--29648167	11	2.7	11	89	0	51	43	16	0	40	1.48
29652228--29652279	14	3.7	14	80	7	52	28	23	21	26	1.99
29652372--29652443	26	2.7	27	80	4	83	36	29	13	20	1.92
29654092--29654136	21	2.1	22	84	12	58	66	8	11	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29654948--29655278	35	9.8	33	86	6	400	40	17	23	18	1.91
29654938--29655278	67	5.0	67	87	4	454	41	17	22	18	1.91
29654948--29655278	169	2.0	168	89	3	513	40	17	23	18	1.91
29657824--29657879	20	2.7	21	81	13	53	69	7	12	10	1.36
29657835--29657879	21	2.1	23	88	12	69	68	8	8	13	1.38
29663496--29663554	3	20.3	3	74	6	50	57	1	1	38	1.19
29663513--29663554	17	2.4	18	92	4	68	57	0	2	40	1.12
29663649--29663707	8	7.1	8	78	17	50	76	5	1	16	1.05
29663694--29663740	24	2.0	24	84	16	62	65	8	4	21	1.37
29663906--29664049	4	35.5	4	67	15	64	65	0	11	22	1.29
29663902--29664069	61	2.9	55	75	17	178	65	0	11	22	1.29
29663959--29664064	53	2.0	54	87	9	155	65	0	11	23	1.25
29665720--29665775	27	2.1	27	83	12	71	30	1	0	67	1.01
29665725--29665776	18	3.1	17	72	16	54	30	1	0	67	1.02
29671056--29671214	46	3.5	46	97	0	300	33	15	22	28	1.94
29671192--29671239	25	1.9	25	95	0	87	45	6	25	22	1.75
29674564--29674618	24	2.3	24	90	0	83	32	21	30	14	1.93
29674660--29674725	26	2.6	27	80	7	66	34	19	24	21	1.96
29676573--29676617	14	3.1	15	81	18	51	40	0	6	53	1.27
29676759--29676844	44	2.0	43	90	2	136	46	5	8	39	1.58
29682300--29682339	18	2.3	18	82	4	55	70	0	0	30	0.88
29686501--29686534	13	2.5	14	90	4	52	20	2	0	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29694862--29694895	4	8.5	4	100	0	68	76	0	0	23	0.79
29699313--29699343	13	2.3	14	94	5	55	54	3	0	41	1.16
29709615--29709685	36	2.0	36	91	0	115	45	14	14	26	1.82
29709614--29709673	17	3.4	17	70	17	50	45	13	11	30	1.79
29709945--29709992	24	2.0	25	87	4	71	45	0	2	52	1.12
29712081--29712276	98	2.0	98	93	2	340	35	12	14	36	1.85
29715786--29715840	16	3.4	16	84	0	74	41	1	29	27	1.66
29716024--29716084	18	3.3	18	88	9	88	59	1	1	37	1.17
29721810--29721856	21	2.3	21	88	3	69	23	25	14	36	1.93
29725009--29725092	41	2.0	41	97	0	159	26	25	17	30	1.97
29731273--29731299	2	13.5	2	100	0	54	51	48	0	0	1.00
29746330--29746360	2	15.5	2	100	0	62	48	0	0	51	1.00
29748464--29748488	6	4.2	6	100	0	50	48	36	0	16	1.46
29756807--29756834	6	4.7	6	100	0	56	32	0	17	50	1.47
29756796--29756838	18	2.5	17	82	14	52	30	0	18	51	1.47
29757081--29757140	30	2.0	30	86	0	84	53	13	3	30	1.56
29772515--29772555	21	2.0	21	85	0	55	21	41	7	29	1.80
29780270--29780320	21	2.4	21	83	3	66	41	1	0	56	1.10
29783426--29783468	21	2.0	21	86	0	59	55	4	4	34	1.41
29785471--29785500	16	1.9	15	93	6	51	73	0	6	20	1.05
29792004--29792031	14	2.0	14	100	0	56	50	0	7	42	1.30
29794131--29794161	15	2.1	15	100	0	62	48	19	6	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29796682--29796706	3	8.3	3	100	0	50	0	32	0	68	0.90
29805224--29805270	23	2.0	24	83	8	60	23	6	2	68	1.24
29806381--29806426	11	4.2	11	86	8	58	23	28	0	47	1.52
29806381--29806423	10	4.0	10	82	11	50	23	30	0	46	1.52
29807595--29807620	7	3.7	7	100	0	52	26	0	15	57	1.38
29808506--29808727	111	2.0	111	97	0	417	23	22	26	27	2.00
29809144--29809676	126	4.3	125	88	6	811	26	20	19	33	1.96
29809301--29809649	114	3.0	114	86	10	520	26	19	18	35	1.95
29809168--29809649	240	2.0	240	94	1	842	26	20	18	34	1.96
29809715--29810083	97	3.8	96	83	5	440	40	16	2	39	1.63
29809709--29810109	96	4.2	96	85	2	446	40	17	2	38	1.65
29813143--29814740	89	17.6	89	74	9	1079	30	22	22	24	1.99
29813143--29813959	355	2.3	356	85	1	1055	29	23	22	24	1.99
29813144--29814735	45	36.1	44	68	11	577	30	22	22	24	1.99
29813143--29814328	444	2.7	439	81	6	1198	30	22	22	24	1.99
29814169--29814723	134	4.2	134	76	3	492	29	23	22	25	1.99
29814794--29815307	132	3.9	132	86	1	717	29	17	23	29	1.97
29817400--29817539	70	2.0	70	85	0	190	29	16	18	35	1.93
29819495--29819526	16	1.9	17	93	6	57	50	3	0	46	1.17
29819515--29819553	5	7.8	5	88	0	51	51	0	2	46	1.14
29819760--29819794	15	2.4	15	90	4	54	37	2	5	54	1.39
29819937--29819974	20	1.9	20	89	10	60	63	2	5	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29828878--29828922	18	2.6	18	86	10	58	42	6	15	35	1.73
29829780--29829972	67	2.9	67	87	1	271	23	19	18	38	1.93
29829754--29829982	67	3.4	66	82	6	232	23	21	16	38	1.93
29831832--29832317	228	2.1	227	84	6	608	30	19	21	28	1.98
29831922--29832317	115	3.5	114	82	5	480	29	19	21	29	1.98
29832686--29832743	21	2.8	20	79	10	62	15	0	39	44	1.47
29832692--29832743	14	3.6	14	82	12	61	17	0	40	42	1.49
29832692--29832743	7	7.3	7	75	12	52	17	0	40	42	1.49
29833112--29833146	19	1.9	19	88	11	56	60	0	2	37	1.12
29833925--29834015	45	2.0	45	86	0	128	24	30	8	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199