genome.fa.s18.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  143  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47582713--47582905	49	3.9	49	95	0	323	23	15	30	31	1.95
47586014--47586353	52	7.6	45	83	12	338	35	14	21	28	1.93
47586157--47586190	7	4.7	7	88	3	50	44	2	26	26	1.69
47586243--47586425	37	5.0	37	94	1	298	36	16	21	25	1.94
47590846--47590958	42	2.7	43	84	2	156	29	28	17	24	1.97
47592365--47592402	15	2.4	17	86	8	53	68	2	0	28	1.03
47593735--47593759	5	5.0	5	100	0	50	80	0	20	0	0.72
47595098--47595360	139	2.0	129	80	12	286	26	11	11	49	1.74
47596033--47596121	15	6.1	15	72	16	55	38	37	1	23	1.63
47596082--47596123	21	2.0	22	85	4	59	38	42	0	19	1.51
47596133--47596164	15	2.1	15	94	0	55	40	34	0	25	1.56
47596363--47596421	15	4.0	15	77	2	66	32	40	1	25	1.66
47596736--47596848	41	2.8	40	82	8	129	35	23	19	21	1.96
47598255--47598321	19	3.7	18	68	22	50	40	4	2	52	1.37
47601999--47602056	30	1.9	30	93	6	100	32	22	0	44	1.53
47605163--47605196	17	2.0	17	88	0	50	35	2	8	52	1.47
47608861--47608923	30	2.1	30	90	0	99	57	15	3	23	1.53
47609591--47609619	14	2.1	14	100	0	58	37	20	6	34	1.80
47613192--47613250	29	2.0	30	83	3	75	52	5	6	35	1.50
47621375--47621468	36	2.7	36	85	4	122	36	22	9	31	1.86
47621375--47621456	18	4.6	18	87	0	101	34	23	10	31	1.89
47621375--47621468	18	5.4	17	82	8	77	36	22	9	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47628096--47628145	23	2.2	23	82	13	59	50	0	4	46	1.20
47628269--47628314	22	2.1	22	84	8	58	50	4	2	43	1.34
47638476--47638600	50	2.5	49	83	6	155	31	21	24	22	1.98
47638414--47638561	50	2.8	55	72	19	134	30	20	25	22	1.99
47638476--47638610	49	2.8	47	82	5	153	30	21	25	22	1.99
47638809--47638847	12	3.2	12	85	0	51	51	5	23	20	1.67
47642793--47642843	15	2.8	20	66	27	58	35	17	23	23	1.95
47653212--47653244	12	2.7	12	95	4	57	27	6	6	60	1.44
47655436--47655583	20	7.4	19	66	15	77	14	28	15	41	1.87
47655433--47655643	40	5.3	40	79	6	212	15	27	15	40	1.88
47655446--47655617	60	2.9	60	69	17	149	13	28	16	41	1.87
47655609--47655663	20	2.8	19	75	2	56	14	30	10	43	1.80
47657757--47657796	21	1.9	21	84	0	53	32	10	5	52	1.56
47662176--47662242	26	2.6	27	79	9	77	16	20	23	38	1.92
47662285--47662392	49	2.2	49	81	6	130	22	27	17	32	1.96
47662311--47662390	24	3.3	25	75	8	76	22	30	16	31	1.96
47662211--47662365	73	2.1	74	81	8	183	21	25	18	33	1.97
47662324--47662403	25	3.2	25	73	1	81	21	27	18	32	1.97
47665829--47665902	31	2.4	31	86	2	114	33	8	10	47	1.68
47665829--47665925	31	3.3	30	82	5	110	30	8	11	49	1.68
47668674--47668749	12	6.6	11	75	21	68	69	3	23	2	1.18
47670939--47671134	89	2.2	91	85	2	263	35	22	10	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47671244--47671286	17	2.4	18	84	3	61	72	2	2	23	1.08
47671239--47671357	55	2.1	54	85	10	152	63	1	3	31	1.20
47671244--47671348	9	11.6	9	66	13	54	67	1	3	26	1.18
47671667--47671864	90	2.2	90	83	5	235	31	9	20	38	1.84
47674722--47674757	16	2.2	16	100	0	72	25	0	36	38	1.56
47674994--47675028	18	2.0	17	88	5	52	54	0	0	45	0.99
47674880--47675196	157	2.0	157	93	1	546	43	3	5	47	1.41
47675130--47675171	15	2.7	16	82	14	52	52	2	0	45	1.13
47675139--47675180	15	2.9	15	82	10	52	52	0	0	47	1.00
47675128--47675417	120	2.4	120	92	5	480	49	4	3	42	1.39
47675249--47675300	15	3.6	15	80	12	56	53	1	0	44	1.11
47675465--47675512	26	1.9	25	84	16	64	52	2	0	45	1.12
47675440--47675645	92	2.3	88	84	9	254	47	2	3	46	1.34
47678868--47679103	97	2.4	97	99	0	463	37	7	13	40	1.74
47679187--47679213	13	2.1	13	100	0	54	37	0	7	55	1.28
47685790--47685843	20	2.6	21	80	11	58	42	9	7	40	1.65
47694041--47694080	2	20.0	2	100	0	80	50	0	50	0	1.00
47701445--47701495	25	2.0	25	96	0	93	31	29	7	31	1.86
47702343--47702412	28	2.6	26	80	13	63	75	5	4	14	1.14
47702380--47702419	5	7.6	5	89	10	62	77	0	0	22	0.77
47702373--47702419	21	2.1	22	88	7	69	78	0	0	21	0.75
47702382--47702419	11	3.5	11	96	3	69	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47704939--47705043	51	2.0	51	81	5	122	56	5	6	31	1.49
47705309--47705359	27	2.0	27	85	11	72	68	1	0	29	1.00
47705762--47705819	22	2.6	22	84	7	73	43	17	3	36	1.66
47705775--47705853	21	3.8	19	79	12	68	39	16	6	37	1.74
47705809--47705852	21	2.1	21	95	0	79	38	13	6	40	1.71
47714003--47714054	22	2.3	23	87	9	81	28	13	40	17	1.87
47717229--47717311	40	2.1	40	93	0	139	27	12	15	44	1.82
47721856--47721938	40	2.1	40	93	0	139	28	10	15	44	1.80
47723745--47723841	34	3.1	34	62	36	83	29	9	14	46	1.76
47723940--47723982	9	4.8	9	78	21	54	18	0	20	60	1.36
47723941--47723973	11	3.2	11	91	8	52	18	0	18	63	1.31
47744141--47744209	25	2.8	25	86	2	104	31	20	24	23	1.98
47748894--47749025	38	3.5	38	75	6	115	26	21	17	34	1.95
47762511--47762957	50	8.8	50	85	2	484	27	20	28	23	1.99
47766705--47766729	6	4.2	6	100	0	50	52	0	48	0	1.00
47788255--47788818	140	4.0	140	84	2	713	27	19	21	31	1.98
47788255--47788783	280	1.9	280	88	1	801	27	19	21	31	1.97
47790409--47790690	36	7.9	35	81	5	294	24	21	16	37	1.93
47790419--47790690	108	2.5	109	83	2	359	25	21	16	37	1.93
47819076--47819100	13	1.9	13	100	0	50	48	16	28	8	1.74
47820250--47820279	15	1.9	16	93	6	53	43	0	6	50	1.28
47820271--47820305	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47820369--47820401	14	2.2	16	89	10	52	42	0	6	51	1.26
47820392--47820426	18	1.9	18	88	0	52	42	0	0	57	0.99
47820208--47820560	121	2.9	120	96	2	663	43	2	3	50	1.34
47820491--47820520	15	1.9	16	93	6	53	43	0	6	50	1.28
47820516--47820555	14	2.9	15	82	14	50	47	0	0	52	1.00
47820512--47820548	16	2.2	17	86	13	51	40	0	0	59	0.97
47820693--47820798	44	2.5	40	80	16	133	36	29	2	31	1.72
47820710--47820798	46	2.0	46	93	4	155	39	29	3	28	1.73
47820780--47820833	16	3.4	16	84	0	81	29	37	0	33	1.58
47837407--47837456	20	2.5	20	93	0	82	56	24	18	2	1.52
47841041--47841098	23	2.5	23	97	0	107	17	10	48	24	1.78
47842646--47842672	8	3.4	8	100	0	54	25	0	0	74	0.83
47844981--47845174	51	3.9	50	76	6	205	29	27	18	24	1.98
47844988--47845170	99	1.8	100	89	5	289	30	27	18	23	1.98
47854643--47854712	28	2.5	28	93	2	115	41	10	1	47	1.46
47854762--47854819	27	2.1	27	96	0	107	22	29	31	17	1.96
47854886--47854925	3	13.3	3	100	0	80	67	0	32	0	0.91
47854976--47855017	19	2.1	21	86	8	61	21	0	7	71	1.09
47860272--47860700	159	2.7	158	72	15	378	29	12	7	50	1.67
47861114--47861155	15	2.7	16	81	3	50	30	0	0	69	0.89
47861572--47861711	4	34.0	4	76	19	105	0	29	0	70	0.87
47861510--47861707	28	7.5	27	72	17	98	0	30	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47861547--47861707	33	5.0	32	74	15	129	0	30	0	69	0.89
47861754--47861821	27	2.5	27	85	0	91	19	25	26	29	1.98
47861875--47861920	23	2.0	23	91	0	74	50	0	6	43	1.28
47863835--47863960	43	2.9	43	92	1	207	29	8	20	41	1.82
47869983--47870225	48	4.9	50	77	12	186	26	20	29	23	1.99
47877967--47878073	50	2.1	50	84	0	142	27	21	31	19	1.97
47878364--47878402	20	2.0	20	90	10	62	56	5	23	15	1.59
47880215--47880286	24	2.9	25	80	12	85	37	22	19	20	1.94
47880151--47880286	50	2.7	49	83	5	150	31	20	20	27	1.98
47880156--47880286	49	2.7	49	85	3	129	32	21	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199