genome.fa.s18.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  163  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53355694--53355799	42	2.5	43	90	4	162	23	19	24	32	1.98
53356233--53356258	12	2.2	12	100	0	52	0	38	19	42	1.51
53356244--53356300	21	2.7	21	88	0	87	3	40	19	36	1.69
53361776--53362026	9	29.8	9	75	12	194	29	2	19	47	1.64
53361765--53362073	25	12.2	25	79	6	261	30	2	18	48	1.62
53361765--53361984	16	13.7	16	72	17	138	30	2	20	46	1.64
53361837--53362025	41	4.8	41	78	15	200	29	2	18	49	1.61
53362118--53362172	24	2.2	26	83	6	69	21	1	18	58	1.49
53362346--53362378	15	2.2	15	94	0	57	54	3	3	39	1.31
53364430--53365207	266	3.0	265	88	8	1278	29	19	19	31	1.96
53364606--53365092	242	2.0	245	95	2	881	30	19	18	32	1.95
53365262--53365576	113	2.8	112	80	7	359	30	19	22	27	1.98
53365724--53365756	17	1.9	18	88	11	52	45	0	12	42	1.41
53368778--53368803	6	4.3	6	100	0	52	15	15	69	0	1.20
53378716--53378782	9	7.3	9	75	8	55	79	0	5	14	0.92
53380684--53380774	9	10.2	9	91	2	132	27	3	0	69	1.04
53380684--53380774	6	15.3	6	92	5	132	27	3	0	69	1.04
53380938--53380970	17	1.9	17	88	11	50	24	0	0	75	0.80
53380898--53380982	44	1.9	43	84	13	111	18	8	1	71	1.17
53381072--53381127	26	2.3	24	82	17	71	28	3	3	64	1.27
53382732--53382762	16	1.9	16	93	0	53	32	9	6	51	1.60
53386968--53387293	43	7.6	43	88	2	424	27	27	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53387001--53387340	86	4.0	83	81	7	310	27	27	15	28	1.96
53387391--53387424	16	2.1	16	88	0	50	55	8	0	35	1.31
53393020--53393061	16	2.5	17	92	7	68	45	0	0	54	0.99
53393168--53393349	7	26.0	7	67	10	59	40	35	1	23	1.62
53393670--53393826	41	3.9	41	94	0	253	28	29	22	19	1.98
53393866--53393994	40	3.2	40	76	9	129	24	21	18	34	1.96
53401753--53401777	5	5.0	5	100	0	50	40	0	0	60	0.97
53403066--53403113	24	2.0	24	84	8	62	47	0	31	20	1.50
53403594--53403632	15	2.5	15	88	12	53	43	7	0	48	1.31
53403557--53403631	28	2.7	27	73	20	64	48	4	1	46	1.29
53404092--53404130	14	2.8	14	88	11	62	30	20	10	38	1.86
53404458--53404513	25	2.1	27	90	6	89	69	1	0	28	0.98
53406797--53406831	17	2.1	17	89	10	54	62	5	14	17	1.49
53406979--53407030	24	2.2	24	86	6	70	59	5	1	32	1.32
53412241--53412291	26	2.0	26	84	0	66	47	11	0	41	1.40
53422508--53422557	26	1.9	26	83	0	64	36	10	2	52	1.47
53426881--53426955	18	4.2	18	73	11	64	48	1	1	49	1.18
53431657--53431694	18	2.1	18	90	5	58	39	5	34	21	1.76
53435434--53436052	113	5.4	112	77	6	503	31	18	23	27	1.97
53435434--53436052	114	5.4	114	77	6	504	31	18	23	27	1.97
53436197--53436232	18	2.0	18	89	10	56	25	0	5	69	1.10
53436599--53436628	7	4.3	7	100	0	60	13	0	60	26	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53437118--53437159	15	2.9	15	89	3	50	2	0	47	50	1.14
53437125--53437159	7	4.9	7	93	6	61	0	0	54	45	0.99
53437125--53437171	14	3.3	14	84	3	58	2	0	46	51	1.13
53437883--53437970	44	2.0	44	90	0	140	25	15	22	36	1.94
53439421--53439456	16	2.2	16	95	0	63	27	11	5	55	1.57
53440234--53440307	18	4.3	18	66	22	50	20	4	14	60	1.50
53440232--53440333	51	2.0	51	100	0	204	21	5	13	58	1.56
53440714--53440763	21	2.4	21	82	0	55	38	16	42	4	1.66
53441079--53441324	42	5.8	42	88	0	357	32	23	21	21	1.98
53441084--53441369	42	6.8	42	86	1	322	29	24	21	24	1.99
53441079--53441366	84	3.4	84	85	2	362	30	23	21	23	1.99
53441723--53441757	17	2.1	17	89	10	54	60	8	14	17	1.58
53447734--53447978	50	4.9	49	74	7	163	24	19	22	33	1.97
53447751--53448031	99	2.8	99	86	3	370	24	20	22	32	1.97
53447840--53447997	50	3.2	48	75	7	140	24	20	20	33	1.97
53447866--53448028	50	3.3	49	75	6	159	25	20	22	31	1.98
53448021--53449072	44	24.1	44	68	9	285	26	23	19	31	1.98
53448016--53448635	175	3.5	175	92	1	994	26	23	19	31	1.98
53448412--53448766	131	2.7	130	85	6	466	27	23	18	30	1.98
53448604--53449080	172	2.8	173	90	3	739	26	24	18	30	1.98
53458973--53459237	103	2.6	104	90	3	417	29	29	20	19	1.97
53459565--53459629	30	2.2	29	81	8	76	30	27	6	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53459572--53459629	30	1.9	30	85	0	80	31	24	6	37	1.82
53466596--53466645	26	1.9	26	95	0	91	30	34	24	12	1.91
53466460--53466723	103	2.6	102	90	3	404	29	29	20	19	1.97
53467051--53467115	30	2.2	29	81	8	76	30	27	6	35	1.81
53467058--53467115	30	1.9	30	85	0	80	31	24	6	37	1.82
53473201--53473289	5	17.8	5	83	0	115	40	20	1	38	1.60
53473818--53473964	49	3.0	51	69	14	135	28	30	19	21	1.97
53473818--53474004	98	1.9	98	85	0	257	28	30	20	20	1.98
53481028--53481077	17	3.1	16	75	19	50	30	0	2	68	1.01
53481141--53481182	7	6.0	7	86	8	50	61	0	0	38	0.96
53484576--53484607	16	2.0	16	100	0	64	31	12	25	31	1.92
53493149--53493201	17	3.1	17	100	0	106	16	5	5	71	1.25
53505336--53505709	175	2.1	175	91	0	606	32	18	19	29	1.96
53505400--53505679	85	3.2	85	73	8	285	32	18	19	29	1.95
53505780--53505874	44	2.2	44	90	0	154	29	24	21	25	1.99
53510900--53511381	105	4.6	104	83	2	547	36	15	15	32	1.89
53510900--53511381	208	2.3	208	85	1	635	36	15	15	32	1.89
53511328--53511410	37	2.2	37	91	0	139	43	18	6	32	1.74
53511222--53511644	142	3.0	142	83	1	537	37	14	15	32	1.88
53511464--53511560	37	2.6	37	88	0	131	38	15	14	31	1.88
53511696--53511726	10	3.1	10	100	0	62	29	12	0	58	1.35
53522123--53522255	69	1.9	70	90	1	214	32	14	16	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53523719--53524280	47	12.0	47	89	0	836	31	11	29	27	1.92
53523840--53523915	23	3.2	25	62	24	63	28	13	34	23	1.92
53524170--53524244	23	3.1	25	63	24	61	29	13	33	24	1.93
53524443--53524594	37	4.1	37	91	0	232	21	21	32	25	1.98
53526294--53526374	41	2.0	41	95	0	144	51	3	12	32	1.57
53529365--53529394	15	2.1	14	93	6	51	26	6	13	53	1.64
53531231--53531287	7	7.9	7	75	13	53	22	0	0	77	0.77
53531234--53531301	20	3.5	20	77	15	81	26	0	0	73	0.83
53531231--53531303	36	2.0	36	86	5	103	26	0	0	73	0.83
53531256--53531303	17	2.6	19	78	15	57	29	0	0	70	0.87
53535611--53535646	7	5.1	7	100	0	72	13	0	41	44	1.44
53538809--53538850	21	2.0	21	90	0	66	7	26	38	28	1.82
53540417--53540473	11	5.2	11	81	14	64	47	0	31	21	1.51
53540430--53540476	11	4.4	10	87	12	67	51	0	29	19	1.47
53548935--53548971	5	7.6	5	87	6	58	37	2	0	59	1.12
53556887--53557002	45	2.6	45	87	0	160	25	15	25	34	1.95
53564465--53564622	80	2.0	80	100	0	316	37	18	16	27	1.92
53568334--53568393	21	2.9	21	68	9	50	45	36	5	13	1.65
53568470--53568522	27	2.0	27	81	7	63	47	32	0	20	1.51
53571621--53571848	127	1.8	125	95	1	411	40	3	3	52	1.36
53574460--53574595	51	2.7	51	81	0	137	26	26	17	29	1.98
53574574--53574616	21	2.0	21	90	0	68	23	32	6	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53574741--53574837	45	2.2	45	84	0	122	28	25	17	27	1.98
53574810--53575172	132	2.8	132	89	2	536	25	24	20	29	1.99
53574921--53575122	44	4.6	44	70	9	133	25	26	21	27	1.99
53576162--53576196	18	1.9	18	100	0	70	60	11	5	22	1.52
53578251--53578284	10	3.5	10	92	4	52	82	5	0	11	0.83
53578281--53578396	30	4.0	28	74	14	101	36	17	5	41	1.72
53578282--53578427	59	2.4	59	84	7	179	33	16	6	43	1.74
53578765--53578794	13	2.4	12	94	5	51	76	0	23	0	0.78
53578880--53578933	22	2.5	22	85	11	67	79	9	7	3	1.03
53591552--53591765	69	3.1	68	69	10	191	42	34	6	17	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199