genome.fa.s18.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  113  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37406173--37406200	14	2.0	14	100	0	56	50	14	7	28	1.69
37412152--37412191	19	2.2	17	91	8	62	45	5	15	35	1.68
37415911--37416168	63	4.1	62	77	9	215	29	20	25	24	1.99
37416050--37416183	62	2.1	63	83	4	164	29	20	25	24	1.99
37421752--37421874	43	2.9	42	84	4	140	27	14	22	34	1.93
37421741--37421885	43	3.4	42	79	3	130	30	13	22	33	1.93
37425294--37425339	23	2.0	23	86	0	65	0	28	0	71	0.86
37426306--37426477	63	2.8	63	87	1	231	26	19	27	25	1.99
37426306--37426477	62	2.8	61	86	3	236	26	19	27	25	1.99
37426421--37426528	50	2.2	50	91	0	180	24	21	28	25	1.99
37426359--37426579	113	2.0	112	86	0	307	25	19	28	27	1.98
37430439--37430506	29	2.3	31	77	10	70	45	8	11	33	1.72
37434032--37434214	38	4.8	38	88	0	276	31	31	24	13	1.93
37435564--37435601	8	4.8	8	81	12	51	73	0	26	0	0.83
37436003--37436043	19	2.1	20	86	4	57	58	2	7	31	1.38
37436888--37436921	17	1.9	17	88	5	50	50	5	2	41	1.42
37439330--37439374	22	2.1	21	83	4	54	53	26	13	6	1.64
37442358--37442541	97	1.9	96	82	3	226	36	16	21	25	1.93
37448033--37448105	24	3.0	24	89	0	110	35	21	28	13	1.92
37460154--37460189	10	3.6	10	88	0	54	8	0	2	88	0.59
37472253--37472312	27	2.2	27	96	0	111	30	13	11	45	1.79
37472913--37472964	16	3.2	16	81	8	52	63	1	0	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37476189--37476217	14	2.1	14	100	0	58	37	6	13	41	1.72
37477986--37478078	47	2.0	47	97	0	177	41	15	15	27	1.86
37482547--37482624	35	2.3	34	84	6	95	33	1	2	62	1.17
37482546--37482624	11	6.9	11	71	13	61	34	1	2	62	1.17
37491530--37491571	22	2.1	19	86	13	57	45	2	0	52	1.13
37493135--37493193	25	2.3	27	82	8	70	47	1	3	47	1.29
37494156--37494287	40	3.3	40	74	7	135	27	16	23	32	1.96
37496006--37496041	18	2.0	18	88	0	54	50	11	25	13	1.75
37503763--37503797	15	2.2	16	95	5	63	48	0	0	51	1.00
37504241--37504290	25	2.0	26	84	4	66	60	14	2	24	1.45
37506167--37506653	241	2.0	241	97	0	920	25	13	23	38	1.91
37508077--37508112	18	2.0	18	94	0	63	36	0	0	63	0.94
37509326--37509365	20	2.0	20	90	0	62	27	10	12	50	1.72
37509823--37509880	26	2.2	26	93	0	98	41	10	12	36	1.76
37513948--37514072	66	1.9	66	88	3	189	45	8	25	20	1.78
37514608--37514668	30	2.0	30	83	0	77	59	0	6	34	1.24
37519246--37519276	3	10.3	3	100	0	62	32	0	32	35	1.58
37522603--37522659	21	2.7	21	97	0	105	26	15	35	22	1.94
37534417--37534480	26	2.4	26	80	10	67	17	15	9	57	1.63
37539385--37539897	44	11.3	44	70	14	283	26	21	19	32	1.97
37539334--37539891	142	4.0	142	88	6	849	27	20	18	32	1.96
37539626--37539877	129	2.0	128	94	3	443	28	19	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37554703--37554950	50	4.8	50	84	5	275	20	29	23	26	1.99
37554702--37554950	105	2.4	101	87	7	342	20	29	23	26	1.99
37555045--37555076	13	2.5	13	94	0	55	56	12	0	31	1.37
37555287--37555344	30	1.9	30	89	0	89	31	24	3	41	1.71
37560003--37560045	16	2.5	19	75	24	51	20	27	4	46	1.71
37562220--37562460	50	4.7	50	85	5	288	20	29	23	26	1.99
37562212--37562460	99	2.4	104	85	7	330	21	29	23	26	1.99
37562555--37562586	13	2.5	13	94	0	55	56	12	0	31	1.37
37562798--37562855	30	1.9	30	89	0	89	31	24	3	41	1.71
37563880--37563907	14	2.0	14	100	0	56	14	14	50	21	1.78
37567133--37567250	50	2.4	50	82	5	148	25	23	22	27	2.00
37567320--37567587	50	5.4	50	67	1	144	29	19	25	25	1.99
37567329--37567635	100	3.1	100	85	0	409	30	19	23	26	1.98
37567643--37567809	45	3.7	45	80	2	176	28	20	25	25	1.99
37569615--37569651	6	5.8	6	90	9	56	45	16	16	21	1.84
37569626--37569780	45	3.4	45	86	1	231	41	20	18	20	1.91
37569635--37569807	45	4.2	39	79	10	134	38	21	19	20	1.93
37569984--37570068	40	2.2	40	82	6	102	41	20	5	32	1.76
37571167--37571214	3	16.3	3	79	12	55	29	2	0	68	1.01
37571231--37571278	25	2.0	25	87	4	71	35	6	6	52	1.52
37571315--37571353	18	2.2	17	86	4	51	35	7	0	56	1.28
37582927--37582987	31	2.0	30	84	9	79	37	9	6	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37603252--37603313	19	3.3	19	75	4	54	66	4	1	27	1.21
37603519--37603620	29	3.4	29	73	7	89	29	6	2	60	1.37
37603519--37603620	30	3.4	30	76	6	100	29	6	2	60	1.37
37603597--37603641	22	2.1	21	84	8	56	31	6	0	62	1.21
37603608--37603654	22	2.1	22	84	7	60	27	8	0	63	1.23
37603519--37603662	60	2.4	59	80	7	141	29	6	2	61	1.36
37603558--37603641	30	2.9	30	77	7	75	28	7	1	63	1.28
37608500--37608562	31	2.1	30	88	8	92	33	1	0	65	1.03
37608517--37608555	21	1.9	21	94	5	71	30	2	0	66	1.05
37608506--37608572	30	2.2	31	84	7	84	32	1	2	62	1.19
37610434--37610464	14	2.2	14	94	0	53	61	16	0	22	1.34
37611532--37611592	22	2.7	22	87	2	77	49	1	1	47	1.21
37611568--37611607	16	2.5	16	91	0	62	47	2	7	42	1.45
37611610--37611729	59	2.1	59	87	1	179	43	5	8	43	1.56
37611798--37611847	25	2.0	26	88	11	77	62	0	0	38	0.96
37623823--37623848	6	4.3	6	100	0	52	15	34	0	50	1.45
37627534--37627584	12	4.2	12	82	9	59	52	7	0	39	1.30
37627534--37627582	18	2.7	18	87	0	71	55	6	0	38	1.25
37628499--37628536	14	2.4	17	87	12	55	52	0	0	47	1.00
37637602--37637677	40	1.9	40	89	2	118	35	2	0	61	1.10
37647054--37647091	19	2.1	19	85	5	51	36	2	0	60	1.11
37647060--37647125	23	2.8	24	78	17	68	39	1	3	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37647072--37647122	21	2.3	23	86	10	70	37	0	3	58	1.16
37651718--37651764	20	2.3	21	77	3	51	46	2	10	40	1.50
37655848--37655880	13	2.3	15	85	15	52	75	6	0	18	1.00
37655828--37655880	21	2.3	23	84	9	65	73	5	1	18	1.12
37656346--37656404	17	3.6	16	71	11	57	8	11	1	77	1.05
37661475--37661513	16	2.3	18	86	8	55	69	0	2	28	1.02
37661845--37661901	20	2.8	21	73	10	55	26	21	15	36	1.93
37662702--37662747	22	2.0	23	84	12	60	34	2	8	54	1.43
37663034--37663128	46	2.1	46	97	0	181	21	6	24	48	1.73
37668281--37668379	42	2.3	42	82	5	119	29	23	20	27	1.99
37669551--37669575	13	1.9	13	100	0	50	40	24	4	32	1.73
37675770--37675981	40	5.3	39	83	5	264	27	28	20	23	1.99
37675770--37675981	80	2.7	80	91	0	345	27	28	20	23	1.99
37679645--37679685	21	2.0	21	85	4	57	63	7	9	19	1.48
37681553--37681992	224	2.0	225	98	0	846	28	13	20	37	1.91
37685289--37685342	26	2.2	24	80	12	56	42	3	9	44	1.54
37687483--37687595	56	2.0	56	92	0	190	52	12	8	26	1.68
37690454--37690573	41	2.9	41	86	2	152	28	19	23	29	1.98
37700002--37700027	7	3.7	7	100	0	52	84	0	0	15	0.62
37700167--37700197	16	2.0	15	93	6	53	45	0	0	54	0.99
37700163--37700206	14	3.1	14	81	9	54	38	0	0	61	0.96
37702074--37702224	76	2.0	75	93	1	257	45	19	9	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37719904--37719955	20	2.6	19	74	17	52	36	19	26	17	1.94
37721673--37721774	42	2.4	43	77	6	109	19	22	34	23	1.97
37729419--37729538	20	6.1	20	73	4	100	39	21	24	15	1.91
37730616--37730714	43	2.3	43	91	0	153	35	27	14	23	1.93
37730720--37730837	42	2.8	42	76	7	114	39	24	12	22	1.89
37733549--37733573	8	3.1	8	100	0	50	40	24	0	36	1.55
37733993--37734039	19	2.5	19	92	0	85	38	8	10	42	1.70
37735351--37735632	148	1.9	150	85	5	392	31	10	16	41	1.83
37735500--37735801	115	2.7	108	89	6	469	33	11	14	39	1.83
37736431--37736532	35	2.9	34	78	9	100	43	40	0	16	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199