genome.fa.s18.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  149  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49338231--49338299	26	2.7	26	79	0	93	24	21	28	24	1.99
49342003--49342043	16	2.6	17	81	14	52	19	19	0	60	1.36
49345477--49345552	26	3.0	25	80	1	89	39	10	17	32	1.83
49346538--49346579	12	3.7	12	75	12	52	42	2	2	52	1.27
49352658--49352702	20	2.2	20	84	7	56	53	11	4	31	1.56
49353784--49353818	18	1.9	18	94	0	61	45	11	14	28	1.79
49358357--49358479	65	1.9	63	83	9	160	22	4	17	54	1.62
49358365--49358492	65	2.0	65	80	11	147	25	4	15	54	1.60
49363351--49363572	40	5.6	40	92	1	365	22	28	21	27	1.99
49363351--49363572	119	1.9	120	93	0	383	22	28	21	27	1.99
49371688--49371908	40	5.6	40	92	1	365	22	28	20	27	1.99
49371684--49371908	79	2.8	80	92	2	373	23	28	20	27	1.99
49371688--49371908	119	1.9	119	93	1	381	22	28	20	27	1.99
49388340--49388408	23	2.9	24	69	16	63	55	7	4	33	1.47
49389376--49389469	47	2.0	47	97	0	179	26	8	50	14	1.72
49389390--49389460	22	3.1	22	66	18	63	26	9	52	11	1.68
49390054--49390349	129	2.3	129	84	2	380	28	20	20	30	1.98
49390065--49390265	44	4.6	44	74	10	180	27	20	21	30	1.98
49390208--49390998	258	3.1	256	79	8	793	26	24	20	28	1.99
49390298--49390996	131	5.4	131	87	2	966	26	25	20	28	1.99
49390384--49390956	44	13.2	44	63	12	153	26	24	20	28	1.99
49391541--49391643	45	2.3	45	76	8	109	52	8	13	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49395539--49395730	3	64.3	3	71	12	92	58	3	6	30	1.41
49397365--49397422	23	2.4	24	85	11	82	44	1	0	53	1.10
49397373--49397422	24	2.1	25	92	7	86	44	2	0	54	1.11
49406829--49406872	10	4.4	10	79	0	52	68	20	9	2	1.28
49409306--49409364	30	2.0	30	86	0	82	37	8	25	28	1.85
49409813--49409884	23	3.2	23	92	2	119	23	20	23	31	1.98
49410017--49410089	38	1.9	37	86	8	103	45	1	21	31	1.61
49413013--49413091	40	2.0	40	92	0	131	32	7	16	43	1.76
49419877--49419931	28	2.0	28	96	0	101	20	23	25	30	1.98
49423894--49423932	17	2.3	17	95	0	69	64	0	17	17	1.30
49430174--49430385	40	5.3	40	83	5	268	23	20	28	27	1.99
49430178--49430385	80	2.6	80	91	0	328	23	20	28	27	1.99
49432556--49432623	29	2.3	29	85	5	93	27	30	13	27	1.94
49432445--49432772	174	1.9	173	92	2	550	31	24	14	29	1.95
49432725--49432803	29	2.7	30	82	13	110	29	30	15	25	1.96
49489742--49489780	20	2.0	20	90	10	62	15	23	5	56	1.59
49489986--49490112	49	2.6	49	78	5	132	25	25	20	29	1.99
49494233--49494261	15	1.9	15	100	0	58	34	17	13	34	1.89
49509766--49509844	25	3.6	22	73	20	58	68	5	2	24	1.22
49514983--49515016	12	2.9	12	95	4	61	67	0	5	26	1.13
49522440--49522473	17	2.0	17	88	0	50	26	38	14	20	1.91
49527192--49527226	18	1.9	18	94	0	61	25	31	8	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49527721--49527750	9	3.4	9	90	9	53	36	0	0	63	0.95
49531213--49531250	19	2.0	20	85	15	53	31	5	21	42	1.75
49534064--49534096	14	2.3	15	89	5	50	24	0	33	42	1.55
49534731--49534773	13	3.5	12	78	15	52	34	0	0	65	0.93
49535346--49535406	26	2.4	26	76	13	72	57	18	13	11	1.65
49537689--49537752	2	32.0	2	83	0	74	1	7	48	42	1.41
49545847--49545893	16	3.2	15	77	22	55	44	12	14	27	1.82
49545828--49545893	29	2.3	29	87	7	91	46	12	13	27	1.78
49545771--49545866	22	4.3	22	90	4	131	48	12	12	26	1.76
49551314--49551420	56	1.9	56	84	3	144	34	11	4	49	1.59
49551450--49551503	26	2.1	26	85	0	72	40	9	1	48	1.46
49554889--49554919	7	4.4	7	100	0	62	12	0	38	48	1.42
49554878--49554940	7	8.0	8	81	10	60	14	0	34	50	1.43
49558456--49558654	100	2.0	100	91	0	326	27	11	26	35	1.90
49564848--49565097	86	2.9	84	82	5	288	43	10	11	35	1.75
49565125--49565300	79	2.2	78	84	4	237	36	13	15	34	1.87
49567008--49567049	22	2.0	21	85	4	57	16	16	19	47	1.83
49567141--49567494	43	8.3	43	83	1	417	29	30	15	25	1.96
49571227--49571340	57	2.0	57	86	6	160	28	22	14	35	1.93
49571760--49571794	16	2.2	16	95	5	63	31	0	34	34	1.58
49572972--49573041	26	2.7	26	84	2	88	35	38	2	22	1.69
49572819--49573148	108	3.0	107	79	11	287	42	26	1	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49573182--49573212	7	4.4	7	100	0	62	32	38	0	29	1.57
49574049--49574204	81	1.9	81	89	3	242	30	24	23	21	1.99
49574049--49574206	41	3.9	41	88	4	230	29	25	23	21	1.99
49576623--49576830	77	2.7	77	85	3	283	48	9	11	31	1.71
49576695--49577129	82	5.4	82	82	3	407	45	11	14	29	1.79
49576673--49577129	163	2.8	165	79	3	464	45	10	14	29	1.78
49581380--49581430	25	2.0	25	88	7	77	35	7	1	54	1.40
49589172--49589222	23	2.3	22	83	6	68	27	0	19	52	1.46
49589172--49589222	10	4.6	11	75	15	52	27	0	19	52	1.46
49592494--49592603	42	2.6	43	84	4	134	31	24	18	25	1.97
49607064--49607102	20	2.0	20	90	10	62	15	23	5	56	1.59
49607394--49607500	50	2.1	50	81	6	128	21	30	20	27	1.98
49613341--49613916	292	2.0	293	92	1	967	39	19	11	28	1.87
49618090--49618398	87	3.6	86	81	4	268	34	12	11	41	1.80
49618160--49618481	87	3.8	83	77	10	255	34	11	11	41	1.78
49620920--49621158	50	4.7	48	78	8	149	24	27	20	27	1.99
49620919--49621222	56	5.9	50	81	3	243	25	27	19	27	1.99
49621069--49621222	56	2.8	56	91	0	245	26	29	16	26	1.97
49621560--49621617	30	1.9	30	89	0	89	31	25	5	37	1.78
49626819--49626860	21	2.0	21	86	4	59	57	11	0	30	1.35
49627747--49627841	50	1.9	50	86	0	136	23	31	21	24	1.98
49628232--49628289	30	1.9	30	89	0	89	32	25	5	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49631722--49631773	11	4.5	11	76	19	52	26	1	1	69	1.10
49632991--49633043	24	2.2	24	83	6	63	39	0	9	50	1.35
49637895--49637938	21	2.1	21	100	0	88	38	9	13	38	1.77
49637894--49637949	21	2.8	19	87	10	85	37	8	16	37	1.80
49637907--49637972	23	3.0	23	82	12	77	37	6	16	39	1.74
49637938--49637982	23	2.0	23	86	4	65	33	4	15	46	1.66
49638485--49638573	44	2.0	44	100	0	178	20	17	6	55	1.65
49642894--49642960	25	2.7	25	93	2	118	25	16	4	53	1.61
49643677--49643717	16	2.7	15	77	7	55	80	0	14	4	0.87
49644979--49645391	132	3.1	132	92	0	682	29	21	24	24	1.99
49645383--49645927	217	2.5	217	88	1	826	28	19	22	28	1.98
49645717--49646134	172	2.4	173	86	4	589	29	19	22	29	1.98
49645462--49646355	389	2.3	390	83	5	1128	29	19	22	28	1.98
49645889--49646320	217	2.0	218	87	3	629	29	18	21	29	1.97
49645374--49646366	44	23.0	42	68	13	390	29	19	22	28	1.98
49646710--49646763	19	2.8	19	97	0	99	37	9	16	37	1.81
49646723--49646786	19	3.0	22	86	8	80	37	6	17	39	1.75
49646752--49646796	23	2.0	23	86	4	65	33	4	15	46	1.66
49650724--49650800	10	8.4	9	77	16	70	33	2	0	63	1.08
49650741--49650800	17	3.4	17	77	22	61	31	1	0	66	1.01
49650886--49650910	3	8.3	3	100	0	50	68	0	0	32	0.90
49653766--49653822	15	3.9	14	78	17	53	61	1	15	21	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49671367--49671522	27	5.9	27	81	3	183	25	20	18	35	1.95
49671383--49671522	53	2.6	54	87	1	192	25	20	18	36	1.95
49673721--49673760	21	1.9	21	84	0	53	45	17	0	37	1.49
49682924--49683071	50	2.8	53	87	6	194	25	20	29	24	1.99
49689999--49690034	15	2.4	16	86	13	58	75	0	0	25	0.81
49690010--49690081	28	2.6	28	67	8	74	59	0	0	40	0.97
49691470--49691504	10	3.4	10	84	7	52	31	25	8	34	1.86
49692893--49692928	17	2.1	18	89	5	56	38	0	19	41	1.52
49700635--49700702	34	2.0	35	88	2	102	16	29	47	7	1.73
49715420--49715475	23	2.4	23	77	14	62	55	3	3	37	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199