genome.fa.s18.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  174  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55915854--55915952	29	3.3	28	81	14	101	55	12	1	31	1.43
55915964--55916237	9	30.2	9	76	7	250	50	16	2	30	1.60
55915986--55916237	91	2.8	90	84	5	312	49	17	2	30	1.60
55921654--55921824	66	2.6	65	82	4	191	39	18	28	14	1.89
55921796--55921907	21	5.3	21	81	0	89	36	16	41	5	1.71
55921806--55921907	42	2.4	42	85	0	123	37	15	42	4	1.69
55922216--55922276	32	1.9	32	86	6	88	19	18	31	31	1.96
55922251--55922347	43	2.3	43	80	3	106	20	19	30	28	1.97
55922603--55922645	22	2.0	22	85	0	59	46	27	16	9	1.77
55927377--55927419	11	3.9	11	82	8	52	76	2	18	2	1.00
55930825--55930860	17	2.0	19	89	10	58	33	30	0	36	1.58
55938504--55938533	15	2.1	15	93	6	53	50	0	0	50	1.00
55940286--55940330	7	6.4	7	97	0	63	13	20	0	66	1.24
55940286--55940330	14	3.2	14	93	0	72	13	20	0	66	1.24
55940357--55940409	27	1.9	28	85	11	74	39	11	9	39	1.74
55942959--55942988	14	2.1	14	93	0	51	23	0	0	76	0.78
55950604--55950632	10	2.9	10	100	0	58	27	0	10	62	1.28
55952401--55952515	54	2.1	55	91	4	187	51	2	22	23	1.61
55952496--55952543	14	3.7	14	70	30	52	47	0	12	39	1.41
55952492--55952539	24	2.0	24	100	0	96	50	0	12	37	1.41
55952640--55952674	3	11.7	3	100	0	70	65	0	0	34	0.93
55953047--55953093	19	2.5	19	86	6	60	70	4	14	10	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55956925--55956999	38	2.0	38	82	10	91	44	2	2	50	1.30
55962398--55962444	3	15.7	3	100	0	94	34	34	0	31	1.58
55963027--55963062	10	3.8	10	85	14	58	72	0	0	27	0.85
55965788--55965812	13	1.9	13	100	0	50	36	0	8	56	1.29
55966780--55966861	39	2.1	38	88	8	121	50	2	0	47	1.14
55967829--55968005	89	2.0	88	93	1	300	30	14	19	35	1.92
55969108--55969338	102	2.3	102	94	1	401	20	20	29	29	1.97
55969238--55969448	75	2.8	75	87	2	291	23	19	26	30	1.98
55973035--55973064	15	2.1	15	93	6	53	50	0	0	50	1.00
55982579--55982749	84	2.0	85	96	1	317	32	8	17	40	1.80
55986017--55986063	19	2.5	19	86	6	60	25	21	10	42	1.85
55988519--55988586	3	22.7	3	90	0	109	72	0	27	0	0.85
55988516--55988596	15	5.3	15	88	7	92	74	0	24	1	0.90
55989859--55989952	43	2.2	44	82	1	109	28	18	23	29	1.97
55990065--55990565	45	11.2	45	88	1	657	28	18	25	28	1.98
55991736--55991777	3	14.0	3	84	0	57	30	0	0	69	0.89
55991736--55991777	12	3.5	12	90	0	66	30	0	0	69	0.89
55992047--55992105	16	3.6	16	77	4	64	37	10	1	50	1.46
55992184--55992254	35	2.0	35	86	5	99	29	11	4	54	1.54
55993979--55994049	35	2.0	35	86	5	99	54	4	11	29	1.54
55994124--55994185	16	3.8	16	80	4	79	53	1	8	37	1.40
55994476--55994524	3	16.3	3	95	0	89	67	2	0	30	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55996615--55996644	14	2.1	14	93	0	51	23	0	0	76	0.78
55996679--55996707	5	5.8	5	100	0	58	20	0	0	79	0.74
55999365--55999422	31	1.9	31	86	10	84	43	0	1	55	1.10
55999437--55999464	14	2.0	14	100	0	56	42	14	28	14	1.84
56008555--56008626	32	2.3	32	86	9	96	63	0	4	31	1.13
56020276--56020322	21	2.2	22	92	3	78	21	38	19	21	1.94
56030912--56030978	33	2.0	33	88	0	98	35	17	28	17	1.93
56038284--56038341	27	2.1	28	81	9	66	27	8	5	58	1.49
56039223--56039265	21	2.0	21	100	0	86	53	18	0	27	1.45
56039550--56039581	16	2.0	16	100	0	64	25	6	6	62	1.42
56042174--56042328	66	2.3	65	78	7	152	20	15	26	37	1.92
56046543--56046580	18	2.1	19	90	5	60	52	5	21	21	1.66
56054599--56054628	14	2.1	14	93	0	51	23	0	0	76	0.78
56056854--56056909	27	2.2	25	83	6	67	64	0	3	32	1.11
56063070--56063133	31	2.0	32	87	6	94	62	0	4	32	1.16
56064214--56064239	2	13.0	2	100	0	52	50	0	0	50	1.00
56067034--56067061	14	2.0	14	100	0	56	21	7	50	21	1.72
56068936--56069004	34	2.0	34	100	0	138	20	31	17	30	1.95
56069133--56070127	340	2.9	340	99	0	1936	41	11	23	23	1.87
56093211--56093267	27	2.2	26	93	6	98	43	19	0	36	1.51
56095590--56095630	21	2.0	21	81	18	50	21	26	19	31	1.97
56101064--56101120	28	2.0	28	96	0	105	42	10	26	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56104322--56104768	44	10.3	43	68	3	250	23	23	22	30	1.99
56104323--56104753	87	5.0	87	92	0	702	24	23	22	29	1.99
56104808--56105722	88	10.4	88	90	0	1262	20	25	27	26	1.99
56104958--56105629	44	15.3	43	60	12	110	20	25	27	26	1.99
56105425--56105657	44	5.3	45	63	8	127	20	25	25	28	1.99
56106939--56106980	6	6.8	6	82	12	50	0	16	0	83	0.65
56106940--56106980	13	3.2	13	89	3	66	0	14	0	85	0.60
56106940--56106977	7	5.7	7	84	9	53	0	15	0	84	0.63
56112110--56112170	27	2.3	27	83	13	74	67	3	3	26	1.22
56114205--56114384	61	2.9	59	80	7	164	41	16	5	37	1.71
56114233--56114386	61	2.5	61	79	3	166	40	14	5	39	1.68
56124598--56124641	19	2.3	19	80	0	52	31	25	22	20	1.98
56132843--56132883	21	2.0	21	81	18	50	31	19	26	21	1.97
56141282--56141357	40	1.9	40	91	0	125	22	23	23	30	1.99
56152430--56152672	91	2.7	89	84	6	287	38	17	8	35	1.80
56152727--56152949	89	2.5	91	85	2	299	34	12	20	32	1.90
56162190--56162223	17	2.0	17	100	0	68	47	11	23	17	1.81
56167185--56167214	8	3.8	8	90	0	51	36	16	0	46	1.47
56172333--56172457	61	2.0	61	100	0	250	34	9	11	44	1.73
56172455--56172547	38	2.5	36	80	11	107	43	18	12	25	1.86
56172476--56172553	38	2.1	38	90	4	122	41	19	14	25	1.89
56174096--56174123	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56176440--56176470	12	2.6	12	94	0	53	32	25	0	41	1.56
56186081--56186335	125	2.0	124	94	0	447	28	18	14	38	1.90
56189808--56189839	14	2.3	14	94	0	55	50	9	6	34	1.60
56191583--56191712	58	2.2	58	80	10	149	31	21	26	20	1.98
56194725--56194904	61	2.9	60	81	5	166	42	16	5	36	1.71
56206334--56206361	6	4.7	6	100	0	56	14	0	0	85	0.59
56213008--56213032	13	1.9	13	100	0	50	68	0	8	24	1.16
56220345--56220718	44	8.6	43	74	8	226	27	22	20	29	1.98
56220277--56220722	214	2.1	214	87	2	642	27	22	20	29	1.98
56224388--56224716	43	7.7	43	74	9	201	27	23	20	29	1.99
56224321--56224764	215	2.1	214	85	5	601	27	22	20	29	1.98
56233812--56233836	12	2.1	12	100	0	50	32	8	16	44	1.76
56239334--56239386	26	2.0	28	85	7	74	45	13	20	20	1.84
56241506--56241581	40	1.9	40	86	0	107	23	26	18	31	1.97
56249948--56250000	23	2.4	22	76	20	56	9	18	1	69	1.25
56254998--56255050	26	2.0	27	85	7	72	47	11	18	22	1.81
56257312--56257359	11	4.1	11	75	15	51	52	2	0	45	1.12
56262796--56262840	22	2.1	21	91	4	72	11	17	28	42	1.84
56262996--56263311	43	7.4	43	83	4	363	19	18	27	33	1.96
56263038--56263311	86	3.2	86	92	4	439	18	18	28	34	1.95
56263038--56263311	129	2.1	129	87	4	401	18	18	28	34	1.95
56263241--56263366	43	2.9	43	80	2	119	25	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56263038--56263355	129	2.5	129	83	2	316	20	20	26	32	1.97
56263532--56263561	9	3.2	9	90	9	51	66	3	0	30	1.07
56263725--56263836	21	5.3	21	84	0	116	5	42	16	34	1.71
56263725--56263826	42	2.4	42	85	0	132	4	43	16	35	1.70
56263808--56263952	66	2.2	66	83	4	177	13	30	17	38	1.88
56263848--56263977	66	2.0	66	87	3	190	15	25	19	40	1.90
56269363--56269395	16	2.1	16	94	0	57	30	0	18	51	1.46
56269431--56269850	9	48.8	9	66	20	111	37	3	15	44	1.62
56269433--56269563	16	7.8	16	70	19	72	36	1	18	43	1.59
56269467--56269551	34	2.5	33	79	9	91	40	1	15	43	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199