genome.fa.s18.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  129  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43165409--43165537	43	3.0	43	77	13	149	31	27	17	23	1.97
43166050--43166106	28	2.0	29	82	3	71	28	17	3	50	1.62
43169166--43169298	63	2.1	61	80	8	142	26	21	6	45	1.77
43172849--43172888	20	2.0	21	90	5	64	32	2	20	45	1.64
43173146--43173212	32	2.1	32	85	0	89	40	32	7	19	1.79
43173914--43173962	21	2.2	21	82	10	53	46	8	10	34	1.67
43173932--43173974	22	2.0	21	86	4	59	46	4	11	37	1.61
43200507--43200541	16	2.1	18	89	10	56	37	2	17	42	1.64
43200802--43200879	35	2.2	35	86	0	111	28	15	26	29	1.96
43203676--43203719	14	3.2	13	84	9	52	50	9	9	31	1.65
43204587--43204614	12	2.3	12	100	0	56	21	0	14	64	1.29
43205289--43205322	16	2.1	16	88	0	50	85	2	2	8	0.80
43207664--43207710	13	3.5	13	88	5	76	63	0	10	25	1.26
43207666--43207710	14	3.3	14	87	6	74	66	0	8	24	1.20
43212275--43213008	369	2.0	370	90	1	1150	32	20	11	35	1.88
43213018--43213061	22	2.0	23	82	13	56	56	22	0	20	1.42
43213083--43213243	81	2.0	79	92	2	268	48	14	8	28	1.73
43229621--43229704	13	6.4	12	74	20	62	44	3	21	30	1.69
43232460--43232498	20	1.9	21	85	15	55	51	2	0	46	1.14
43232506--43232549	22	2.0	22	81	0	52	40	0	0	59	0.98
43237991--43238043	26	2.0	27	88	3	81	32	22	20	24	1.98
43245970--43246147	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43245971--43246126	82	1.9	81	88	3	233	26	15	28	29	1.96
43245968--43246147	82	2.2	81	83	3	227	27	15	27	29	1.96
43254196--43254373	27	6.6	27	83	3	205	26	15	28	29	1.96
43254197--43254352	82	1.9	81	88	3	233	26	15	28	29	1.96
43254193--43254373	82	2.2	81	83	2	229	27	15	27	29	1.96
43259144--43259234	33	2.8	33	76	6	103	18	19	16	45	1.86
43261891--43261919	6	4.8	6	100	0	58	51	31	0	17	1.45
43265535--43265568	3	11.3	3	93	0	59	32	2	0	64	1.08
43269198--43269247	26	1.9	26	91	0	82	36	12	10	42	1.76
43271149--43271198	26	1.9	26	100	0	100	38	12	6	44	1.66
43273270--43273319	26	1.9	26	87	0	73	42	10	6	42	1.63
43279726--43279750	12	2.1	12	100	0	50	40	16	20	24	1.91
43281338--43281433	31	3.1	31	92	3	165	45	13	8	32	1.73
43286474--43286512	4	10.0	4	88	5	62	71	2	0	25	0.98
43286815--43286879	32	2.1	32	97	2	123	47	12	9	30	1.72
43295308--43295453	40	3.7	40	84	7	181	23	22	27	26	2.00
43295308--43295486	80	2.2	80	81	6	195	25	21	26	25	2.00
43298731--43298826	31	3.1	31	95	3	174	45	13	9	31	1.75
43304336--43304435	47	2.2	46	91	5	159	10	13	9	68	1.41
43304963--43305058	31	3.1	31	95	3	174	45	13	9	31	1.75
43310586--43310635	26	1.9	26	100	0	100	38	12	6	44	1.66
43314723--43314772	26	1.9	26	95	0	91	36	14	6	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43316842--43316893	26	2.0	26	92	0	86	34	11	7	46	1.69
43320099--43320154	12	5.1	11	82	8	53	73	0	5	21	1.03
43320099--43320152	5	10.0	5	80	11	54	74	0	5	20	1.02
43329086--43329135	26	1.9	26	88	8	75	38	8	6	48	1.57
43331199--43331248	26	1.9	26	95	0	91	40	10	6	44	1.63
43333311--43333360	26	1.9	26	100	0	100	38	12	6	44	1.66
43337284--43337333	26	1.9	26	95	0	91	40	12	4	44	1.60
43339212--43339261	26	1.9	26	95	0	91	40	12	4	44	1.60
43352651--43352700	26	1.9	26	95	0	91	38	10	6	46	1.62
43356869--43356960	47	1.9	48	86	2	132	25	15	27	32	1.95
43358191--43358217	11	2.5	11	100	0	54	48	18	7	25	1.74
43359774--43360002	51	4.5	51	78	6	214	25	19	24	29	1.98
43359717--43360000	152	1.9	152	91	2	464	25	19	25	29	1.98
43364882--43364933	26	2.0	26	100	0	104	38	7	7	46	1.61
43364883--43364940	26	2.3	24	91	8	82	37	8	6	46	1.61
43367174--43367232	29	2.1	29	81	6	68	62	0	5	32	1.17
43369082--43369194	43	2.6	43	81	1	118	27	23	20	29	1.99
43369073--43369751	208	3.2	217	83	5	862	27	21	19	30	1.98
43371001--43371049	25	1.9	26	91	4	82	57	10	18	14	1.65
43382485--43382558	28	2.7	28	83	8	91	60	5	0	33	1.19
43382485--43382567	24	3.2	23	75	24	69	59	6	0	34	1.22
43382533--43382586	24	2.2	25	84	15	69	55	3	1	38	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43382587--43382657	28	2.6	27	81	4	79	63	2	1	32	1.18
43382528--43382680	47	3.1	48	71	16	132	58	2	1	36	1.23
43384858--43384909	26	2.0	26	100	0	104	38	11	7	42	1.70
43385305--43385413	43	2.5	44	85	4	132	28	26	16	28	1.97
43386112--43386163	23	2.3	23	79	0	59	34	7	30	26	1.85
43390927--43391001	36	2.2	34	83	9	91	38	38	1	21	1.62
43391057--43391135	33	2.4	33	91	2	124	32	44	5	17	1.71
43391754--43392035	41	6.9	41	85	0	359	28	26	21	23	1.99
43393948--43393999	26	2.0	26	96	0	95	36	11	7	44	1.70
43396698--43396744	24	1.9	25	82	4	60	34	4	27	34	1.77
43407776--43407828	21	2.5	21	84	6	72	13	15	32	39	1.85
43412316--43412604	49	5.7	49	81	7	185	28	20	27	24	1.99
43412369--43412603	49	4.8	49	80	6	217	27	21	27	23	1.99
43416996--43417069	25	3.0	25	84	7	105	32	20	20	27	1.97
43420156--43420205	21	2.5	20	80	6	64	18	10	12	60	1.59
43425183--43425305	21	5.9	20	79	6	138	18	14	13	53	1.72
43425185--43425308	42	3.0	42	93	1	214	18	14	13	53	1.73
43427678--43427835	79	2.0	79	97	0	298	32	25	11	31	1.91
43429142--43429180	15	2.5	16	84	15	55	53	0	2	43	1.14
43429492--43429534	18	2.4	18	84	0	59	76	9	2	11	1.10
43429827--43429859	11	3.0	11	91	8	50	42	3	0	54	1.15
43436556--43436654	42	2.3	42	79	8	112	31	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43436576--43436688	42	2.7	40	77	16	111	31	29	16	22	1.96
43437525--43437589	13	5.0	13	85	7	87	32	7	24	35	1.84
43450697--43450725	15	1.9	15	100	0	58	37	0	0	62	0.96
43453218--43453394	45	4.0	45	80	7	191	22	13	27	36	1.92
43453218--43453394	90	2.0	88	83	4	221	22	13	27	36	1.92
43456804--43456848	21	2.3	19	84	7	54	46	13	2	37	1.55
43457042--43457093	23	2.3	23	82	0	68	51	23	5	19	1.67
43464580--43464638	29	2.0	29	96	0	109	32	6	25	35	1.82
43473359--43473415	27	2.1	27	84	9	73	45	1	0	52	1.11
43474113--43474304	60	3.2	60	79	3	208	48	11	15	23	1.77
43475211--43475280	22	3.3	21	80	7	79	54	4	1	40	1.29
43475582--43475717	43	3.2	43	84	1	139	31	27	16	25	1.96
43475706--43475736	15	2.1	15	100	0	62	25	22	25	25	2.00
43477503--43477547	21	2.1	21	95	0	81	37	11	8	42	1.72
43479017--43479134	41	2.9	41	84	1	146	30	19	15	34	1.93
43481247--43481372	28	4.5	28	92	2	191	32	27	12	26	1.93
43481819--43481845	12	2.2	12	100	0	54	40	0	7	51	1.30
43494057--43494098	18	2.2	18	87	8	57	30	9	9	50	1.67
43495613--43496014	31	13.1	30	70	10	240	42	21	8	28	1.82
43495597--43496013	184	2.3	184	93	0	708	42	21	8	27	1.81
43500250--43500312	28	2.1	31	85	11	87	33	4	3	58	1.35
43503653--43503687	3	11.7	3	100	0	70	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43504110--43504136	4	6.8	4	100	0	54	77	0	22	0	0.76
43504109--43504140	12	2.5	13	90	10	57	78	0	21	0	0.76
43504740--43504805	29	2.2	31	84	10	84	39	0	3	57	1.14
43505115--43505150	18	2.0	18	89	10	56	41	5	19	33	1.75
43505196--43505251	27	2.2	25	83	6	67	35	3	12	48	1.58
43505228--43505299	31	2.4	30	79	9	83	37	9	9	43	1.71
43505611--43505650	20	2.0	20	100	0	80	55	10	0	35	1.34
43508831--43508863	18	1.9	17	88	11	50	33	18	6	42	1.75
43517204--43517233	13	2.3	13	94	0	51	56	13	10	20	1.65
43518647--43518735	44	2.0	44	97	0	169	46	10	11	32	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199