genome.fa.s18.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  30  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12511760--12511818	7	8.4	7	77	17	52	57	0	0	42	0.98
12511746--12511826	29	2.7	30	77	14	87	58	0	0	41	0.98
12511843--12511884	21	2.0	21	90	0	66	35	21	11	30	1.90
12523890--12523923	16	2.2	15	89	5	50	14	8	0	76	1.01
12535704--12535740	19	2.1	18	90	10	58	29	0	8	62	1.24
12536315--12536387	29	2.4	29	77	4	74	49	6	8	35	1.59
12539046--12539123	33	2.4	33	83	12	106	26	26	16	29	1.97
12541261--12541293	12	2.7	13	86	13	52	39	0	24	36	1.56
12542228--12542266	18	2.2	17	86	13	53	33	0	20	46	1.51
12542385--12542413	8	3.6	8	100	0	58	24	13	27	34	1.93
12542500--12542575	23	3.3	23	96	0	143	21	21	26	31	1.98
12549733--12549761	8	3.6	8	100	0	58	24	13	27	34	1.93
12549848--12549920	23	3.2	23	90	0	119	21	21	26	30	1.99
12551282--12551380	41	2.4	41	88	3	137	28	20	24	27	1.99
12556280--12556314	3	11.7	3	100	0	70	0	31	0	68	0.90
12561756--12561814	22	2.7	21	79	10	55	64	11	16	6	1.47
12569530--12569555	7	3.7	7	100	0	52	42	26	15	15	1.87
12571687--12571726	21	1.9	22	85	10	57	32	27	20	20	1.97
12577978--12578088	56	2.0	54	89	3	168	37	11	9	41	1.73
12577990--12578097	54	2.0	56	87	7	159	36	12	8	42	1.74
12578798--12578853	13	4.5	12	78	12	51	30	0	1	67	1.01
12582101--12582240	46	3.0	45	89	4	208	30	29	7	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12583467--12583514	17	2.9	17	90	3	71	54	18	0	27	1.44
12583677--12583757	21	3.9	21	74	6	83	23	19	13	43	1.87
12583692--12583803	42	2.7	42	81	0	125	18	25	15	41	1.89
12589310--12589364	25	2.3	24	84	6	67	61	7	3	27	1.39
12618496--12618757	128	2.1	126	84	4	330	42	17	14	24	1.88
12629470--12629618	28	5.3	28	93	1	253	46	23	0	30	1.53
12634986--12635196	41	5.1	42	85	5	247	30	19	22	27	1.98
12641903--12642115	42	5.1	42	84	4	238	30	19	23	27	1.98
12658515--12658553	11	3.5	11	78	0	51	56	0	0	43	0.99
12658517--12658566	22	2.3	22	100	0	100	60	0	0	40	0.97
12660485--12660527	21	2.0	21	100	0	86	41	4	18	34	1.71
12665480--12665589	42	2.6	43	82	7	127	35	25	15	23	1.94
12668912--12669039	50	2.6	50	85	7	156	21	30	20	27	1.98
12668955--12669056	50	2.0	50	87	7	127	18	35	20	25	1.95
12669311--12669447	41	3.4	40	78	12	147	32	26	16	24	1.96
12669332--12669449	40	2.9	41	83	9	152	31	27	16	23	1.97
12670941--12670998	30	1.9	31	92	3	100	41	10	17	31	1.83
12671322--12671410	45	2.0	45	90	0	142	25	17	23	32	1.97
12673496--12673539	21	2.1	21	86	0	61	36	22	0	40	1.54
12676942--12676973	15	2.1	15	94	0	55	0	21	0	78	0.76
12676992--12677024	16	2.1	16	88	11	50	9	24	3	63	1.38
12677033--12677081	5	9.0	5	84	10	53	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12677033--12677081	21	2.2	21	92	7	80	57	0	0	42	0.99
12680619--12680673	24	2.3	24	90	0	83	20	27	18	34	1.95
12681362--12681390	14	2.0	15	93	6	51	27	0	20	51	1.47
12682538--12682688	42	3.5	42	78	7	110	25	19	25	29	1.99
12682587--12682688	42	2.4	42	84	9	120	25	21	24	28	1.99
12684924--12684990	29	2.3	29	84	2	80	47	20	4	26	1.69
12685530--12685603	38	1.9	39	83	2	96	16	9	2	71	1.23
12685602--12685655	9	5.9	9	82	10	65	22	0	3	74	0.98
12685602--12685642	13	3.1	13	83	16	57	19	0	2	78	0.87
12685873--12685920	19	2.5	19	82	3	51	39	4	0	56	1.19
12685837--12685975	72	1.9	72	88	0	206	41	3	4	51	1.39
12686055--12686119	20	3.2	20	69	16	62	50	3	7	38	1.47
12686044--12686128	40	2.1	41	93	2	145	52	3	7	36	1.46
12686064--12686126	20	3.2	20	70	17	67	55	3	6	34	1.41
12687337--12687395	21	2.7	24	75	19	67	61	3	0	35	1.13
12687445--12687513	23	3.1	22	82	10	70	53	2	0	43	1.15
12687480--12687521	21	2.0	20	90	4	66	61	2	0	35	1.09
12687475--12687544	33	2.1	34	89	5	108	61	1	0	37	1.05
12687584--12687639	10	5.9	9	82	12	67	75	3	0	21	0.96
12687591--12687648	5	11.8	5	80	15	68	77	3	1	17	0.99
12687591--12687639	19	2.5	19	93	3	80	77	4	0	18	0.92
12687656--12687702	20	2.3	21	75	10	53	74	2	8	14	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12701777--12701836	30	2.0	30	83	6	77	45	8	5	41	1.56
12706766--12706794	6	4.8	6	100	0	58	0	68	0	31	0.89
12710330--12710622	120	2.4	120	94	2	500	41	3	4	50	1.39
12710455--12710496	15	2.9	15	82	10	52	47	0	0	52	1.00
12710584--12710625	15	2.7	16	82	14	52	45	0	2	52	1.13
12710575--12710616	15	2.9	15	82	10	52	47	0	0	52	1.00
12710559--12710875	157	2.0	157	94	1	555	47	5	3	43	1.41
12710927--12711017	45	2.0	45	85	2	121	37	28	6	27	1.82
12710998--12711066	16	4.2	16	96	3	129	37	37	0	24	1.56
12710998--12711066	33	2.1	32	97	2	129	37	37	0	24	1.56
12729082--12729134	23	2.4	22	76	20	56	9	18	1	69	1.25
12738550--12738635	21	4.0	21	84	4	111	39	25	20	13	1.90
12738552--12738636	44	2.0	41	90	6	134	37	25	21	15	1.92
12738963--12738995	16	2.1	16	88	11	50	24	24	0	51	1.48
12739205--12739252	16	2.9	16	87	3	60	0	18	10	70	1.15
12739226--12739270	16	2.8	16	83	10	56	2	13	6	77	1.05
12739906--12739954	9	5.1	9	79	13	53	65	8	0	26	1.20
12740561--12740637	31	2.5	30	85	6	100	44	7	15	32	1.75
12745810--12745952	33	4.3	33	66	13	96	32	16	23	28	1.96
12745740--12745978	101	2.4	101	90	2	383	32	15	23	28	1.95
12746255--12746297	21	2.0	21	90	0	68	53	6	16	23	1.67
12746793--12746832	20	2.0	20	90	0	62	30	10	10	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12746778--12746844	34	1.9	35	87	3	100	32	8	11	46	1.72
12750220--12750410	36	5.0	36	83	12	238	37	13	20	29	1.90
12750184--12750374	82	2.3	82	95	0	337	37	12	21	29	1.89
12755344--12755600	41	6.3	41	89	0	399	22	28	19	29	1.98
12755344--12755600	122	2.1	123	90	0	399	22	28	19	29	1.98
12755813--12755869	18	3.3	17	78	4	53	49	19	1	29	1.58
12768175--12768331	78	2.0	79	85	3	210	36	12	22	28	1.91
12786240--12786272	15	2.2	15	89	10	50	51	0	3	45	1.16
12786257--12786312	28	2.0	28	86	3	78	57	7	1	33	1.37
12791655--12791681	13	2.1	13	100	0	54	22	22	7	48	1.75
12793598--12793659	21	3.0	21	73	0	61	17	19	16	46	1.84
12793665--12793715	21	2.4	21	90	0	75	15	29	19	35	1.93
12796769--12796880	22	5.0	22	82	7	118	37	20	25	16	1.93
12796839--12796893	25	2.2	25	86	0	74	38	21	23	16	1.93
12797850--12797907	5	11.6	5	100	0	116	58	0	0	41	0.98
12799562--12799654	39	2.5	37	80	7	98	27	29	22	20	1.98
12799989--12800029	12	3.4	12	86	0	55	53	4	0	41	1.22
12800544--12800583	19	2.2	19	90	4	64	15	12	0	72	1.12
12800592--12800621	3	9.7	3	92	7	51	63	3	0	33	1.11
12800735--12800789	5	11.2	5	74	18	53	58	1	0	40	1.09
12800734--12800789	22	2.5	22	80	5	69	57	1	0	41	1.09
12800733--12800787	27	2.0	27	86	6	76	54	1	0	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12803327--12803375	25	2.0	25	83	0	62	34	16	22	26	1.95
12804211--12804241	11	2.8	11	95	0	53	41	16	0	41	1.48
12828135--12828159	2	12.5	2	100	0	50	48	0	52	0	1.00
12829074--12829114	20	2.0	22	90	9	68	56	4	36	2	1.34
12837780--12837804	2	12.5	2	100	0	50	52	0	0	48	1.00
12846932--12846974	19	2.5	16	78	14	50	23	2	6	67	1.27
12855770--12855809	21	2.0	20	85	5	53	52	15	12	20	1.74
12862002--12862115	42	2.7	42	80	0	138	41	16	23	18	1.90
12862280--12862372	45	2.1	45	89	4	143	45	11	1	41	1.48
12863230--12863269	18	2.2	18	90	0	62	40	22	7	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199