genome.fa.s18.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  126  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42180580--42180621	11	3.7	11	90	3	66	26	0	2	71	0.98
42183657--42183749	46	2.0	46	100	0	186	37	10	19	32	1.86
42190281--42190343	27	2.4	27	84	10	85	28	33	15	22	1.95
42190928--42191027	26	3.8	26	70	12	80	34	31	15	20	1.93
42195507--42195557	13	3.9	13	75	10	59	31	5	23	39	1.79
42195744--42195839	33	2.8	35	72	20	87	48	1	3	46	1.24
42196273--42196298	13	2.0	13	100	0	52	46	15	15	23	1.83
42209050--42209143	27	3.4	27	85	1	125	34	15	22	27	1.95
42210825--42210849	12	2.1	12	100	0	50	36	8	16	40	1.77
42210837--42210898	26	2.3	26	72	8	63	38	9	22	29	1.86
42210837--42211222	53	7.1	52	77	8	324	40	11	21	26	1.87
42210892--42211011	62	1.9	62	93	3	206	40	10	21	26	1.86
42210809--42211064	115	2.2	115	84	5	336	41	10	20	27	1.85
42210954--42211073	27	4.5	26	68	4	87	40	10	20	28	1.86
42211147--42211219	26	2.7	26	75	12	76	38	13	26	21	1.91
42215979--42216077	28	3.6	27	78	9	110	32	12	27	28	1.92
42217008--42217313	47	6.5	47	87	1	409	28	11	16	44	1.82
42217243--42217313	23	3.1	23	74	6	72	30	14	14	40	1.85
42217829--42217864	10	3.7	10	88	7	56	8	13	0	77	0.98
42222770--42222829	30	2.0	30	100	0	120	56	10	3	30	1.48
42225513--42225542	13	2.4	12	94	5	51	63	0	0	36	0.95
42227239--42227336	44	2.2	45	83	1	126	27	26	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42227440--42227650	44	4.8	43	69	9	120	29	21	17	31	1.96
42227548--42227688	44	3.2	43	74	7	140	26	23	15	34	1.95
42227841--42228200	100	3.6	100	93	0	594	26	23	20	29	1.99
42227846--42228200	50	7.1	49	71	5	262	26	23	20	29	1.99
42229462--42229511	8	6.6	8	77	9	52	14	12	0	74	1.09
42237985--42238042	29	2.0	29	89	0	89	20	20	15	43	1.88
42240416--42240517	50	2.0	50	98	0	195	35	10	21	32	1.88
42245714--42245809	29	3.2	30	73	10	90	30	6	13	50	1.66
42246826--42246871	24	2.0	22	83	8	56	36	8	2	52	1.45
42246858--42246917	26	2.3	26	83	11	70	31	8	3	56	1.45
42248825--42248949	62	2.0	62	95	0	223	40	21	6	32	1.79
42250220--42250293	10	7.2	10	75	11	60	81	5	8	5	0.99
42250231--42250275	23	2.0	23	86	0	63	82	4	8	4	0.94
42251093--42251288	108	1.8	108	85	2	277	25	16	11	46	1.80
42251795--42252151	44	8.1	45	73	6	248	28	15	26	29	1.96
42251791--42252155	132	2.8	132	85	2	466	28	15	26	29	1.96
42252217--42252668	50	9.0	50	68	5	259	30	21	22	26	1.98
42252190--42252668	100	4.8	99	86	3	631	30	20	22	26	1.98
42252765--42253903	82	13.9	82	93	0	1865	32	24	19	23	1.98
42254601--42254629	5	5.8	5	100	0	58	0	17	0	82	0.66
42255558--42255592	15	2.4	15	90	4	54	34	8	0	57	1.29
42255688--42255724	7	5.1	7	87	6	56	27	2	0	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42255861--42255920	22	2.7	23	75	14	63	35	11	0	53	1.38
42255861--42255927	23	3.0	23	72	14	59	37	11	0	50	1.39
42255949--42255994	24	2.0	22	83	8	56	39	8	0	52	1.33
42255982--42256040	26	2.2	26	82	8	66	32	8	1	57	1.39
42266652--42266777	28	4.5	28	92	2	191	32	27	12	26	1.93
42270883--42270976	38	2.5	38	82	3	100	30	15	23	29	1.96
42275450--42275485	5	7.0	5	96	3	63	77	0	0	22	0.76
42282777--42282838	31	2.0	31	100	0	124	64	0	29	6	1.18
42297583--42297689	50	2.1	50	82	0	133	26	20	30	22	1.98
42297847--42297873	13	2.1	13	100	0	54	48	7	14	29	1.71
42304337--42304386	23	2.2	23	88	0	73	52	20	14	14	1.75
42304345--42304432	46	1.9	46	83	4	115	50	20	14	14	1.78
42304344--42304432	23	3.9	23	73	5	72	49	21	14	14	1.79
42310032--42310134	23	4.5	23	87	0	134	21	14	22	41	1.89
42314554--42314714	75	2.1	75	90	4	254	21	16	27	34	1.94
42315277--42315340	9	7.1	9	77	13	60	23	9	25	42	1.84
42315284--42315340	27	2.1	27	83	6	71	21	8	26	43	1.81
42315460--42315558	50	2.0	49	86	2	135	43	18	13	25	1.86
42318494--42318574	40	2.0	41	90	7	130	22	22	25	29	1.99
42320603--42320933	29	11.4	29	83	0	365	21	27	14	37	1.92
42332576--42332644	25	2.8	25	77	0	84	27	20	24	27	1.99
42333019--42333046	14	2.0	14	100	0	56	28	28	0	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42333244--42333318	36	2.1	35	90	2	114	50	22	8	18	1.73
42333580--42333671	25	3.7	25	83	0	103	29	21	21	27	1.99
42333631--42333680	25	2.0	25	88	7	75	22	20	32	26	1.98
42335550--42335583	17	1.9	18	94	5	61	14	0	8	76	1.01
42336659--42336708	25	2.2	22	82	13	57	56	4	4	36	1.37
42336924--42336971	20	2.5	20	89	3	71	64	6	14	14	1.47
42337268--42337293	4	6.5	4	100	0	52	53	0	0	46	1.00
42338999--42339049	16	3.1	16	77	5	57	50	1	1	45	1.24
42340184--42340295	31	3.7	31	75	10	106	43	3	8	44	1.51
42356219--42356256	18	2.1	18	90	0	58	52	2	7	36	1.45
42356266--42356441	68	2.6	68	96	0	325	40	4	8	46	1.55
42356316--42356343	9	3.1	9	100	0	56	32	0	10	57	1.33
42356384--42356411	9	3.1	9	100	0	56	32	0	10	57	1.33
42356484--42356525	22	1.9	22	90	9	68	61	0	0	38	0.96
42360213--42360305	35	2.7	35	79	11	93	35	19	27	17	1.94
42365668--42365767	51	2.0	50	90	5	159	48	18	5	29	1.69
42366239--42366269	15	2.1	15	93	0	53	48	16	6	29	1.70
42366642--42366689	15	3.0	15	76	11	51	35	6	31	27	1.82
42366752--42366787	15	2.4	15	90	0	54	25	11	25	38	1.88
42388697--42388750	26	2.1	25	86	3	72	20	7	14	57	1.61
42401641--42401690	20	2.5	20	81	12	66	16	24	2	58	1.49
42401901--42402084	50	3.6	49	81	8	183	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42408976--42409198	40	5.6	39	83	5	232	24	20	28	26	1.99
42409051--42409233	79	2.3	80	81	1	217	25	20	28	25	1.99
42416840--42417062	40	5.6	39	83	5	232	24	20	28	26	1.99
42416915--42417097	79	2.3	80	81	1	217	25	20	28	25	1.99
42425711--42425876	39	4.2	40	82	8	189	24	21	28	25	1.99
42434557--42434779	40	5.6	39	83	5	232	24	20	28	26	1.99
42434632--42434814	79	2.3	80	81	1	217	25	20	28	25	1.99
42449167--42449206	20	1.9	22	85	10	57	32	7	10	50	1.64
42458487--42458535	21	2.3	21	85	0	71	24	6	36	32	1.80
42461599--42461672	37	2.0	37	81	5	87	44	10	6	37	1.66
42465504--42465771	76	3.5	75	84	2	340	36	17	16	28	1.92
42469684--42469728	18	2.5	18	82	7	56	37	4	17	40	1.70
42476239--42476281	5	8.8	5	85	14	63	16	0	2	81	0.79
42476240--42476280	19	2.2	19	91	8	66	17	0	2	80	0.82
42477838--42477865	6	4.7	6	100	0	56	0	14	0	85	0.59
42478395--42478486	48	1.9	47	97	2	175	45	6	5	42	1.53
42480860--42480923	25	2.5	26	77	12	69	50	15	7	26	1.71
42485572--42485627	21	2.7	21	94	0	94	12	19	7	60	1.55
42485924--42485964	17	2.3	19	87	8	59	56	0	0	43	0.99
42490957--42490994	20	2.0	20	94	5	69	34	10	5	50	1.59
42496139--42496170	15	2.1	15	94	0	55	31	15	6	46	1.71
42504411--42504461	18	2.8	18	74	14	50	50	0	5	43	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42506387--42506453	34	1.9	35	87	3	100	44	11	8	34	1.73
42507174--42507202	15	1.9	15	100	0	58	62	17	20	0	1.33
42523836--42523910	27	2.8	27	91	0	123	22	26	26	24	2.00
42524421--42524452	6	5.3	6	96	0	55	0	34	37	28	1.57
42529049--42529082	3	11.3	3	93	0	59	35	2	0	61	1.11
42530558--42531719	582	2.0	582	94	0	2031	29	21	15	32	1.94
42532040--42532302	136	1.9	135	89	3	411	32	20	12	34	1.90
42539937--42539985	19	2.6	18	87	6	62	48	0	10	40	1.37
42540110--42540161	14	3.6	14	82	5	68	26	7	3	61	1.41
42547809--42548072	68	3.9	68	87	0	348	25	21	16	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199