genome.fa.s18.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  107  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35833779--35834196	229	1.9	222	85	4	577	56	16	2	25	1.51
35835364--35835527	80	2.0	80	94	0	283	31	15	25	27	1.96
35838442--35838539	30	3.3	30	79	0	115	34	44	12	8	1.71
35838876--35838937	21	3.0	21	69	9	63	32	38	19	9	1.84
35842210--35842491	126	2.2	126	91	1	467	28	20	18	32	1.96
35842534--35843018	96	5.1	96	87	5	678	39	17	2	40	1.63
35842534--35842997	191	2.4	191	89	5	711	39	17	2	41	1.62
35847444--35847496	27	2.0	27	88	0	79	28	24	13	33	1.93
35847445--35847502	27	2.1	27	83	0	71	31	25	12	31	1.92
35852031--35852095	6	10.8	6	96	0	121	66	16	0	16	1.26
35853035--35853132	36	2.8	34	77	9	97	48	0	3	47	1.17
35856538--35856569	9	3.4	10	87	12	50	0	28	0	71	0.86
35857966--35858033	31	2.2	31	97	0	127	51	4	17	26	1.64
35860849--35861167	108	3.0	107	90	5	511	31	17	19	31	1.95
35861581--35861641	22	2.7	23	75	9	63	54	0	11	34	1.37
35867156--35867228	38	1.9	37	86	8	103	31	21	1	45	1.61
35867358--35867475	23	5.1	23	93	0	191	31	26	21	21	1.98
35868407--35868443	9	4.1	9	100	0	74	45	10	10	32	1.74
35868800--35868830	16	1.9	16	93	0	53	25	29	0	45	1.54
35871435--35871560	49	2.6	48	83	2	146	30	24	15	29	1.95
35877988--35878040	21	2.5	21	84	9	63	47	7	7	37	1.60
35878057--35878143	20	4.4	19	71	10	59	47	13	9	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878197--35878231	18	1.9	18	88	0	52	40	20	8	31	1.82
35888096--35888186	25	3.6	25	81	8	105	29	21	21	26	1.99
35893609--35893714	51	2.1	51	98	0	203	47	23	6	22	1.75
35904675--35904715	22	1.9	21	85	5	55	26	0	7	65	1.18
35904836--35904896	29	2.1	30	87	9	90	39	1	3	55	1.26
35904814--35904888	37	1.9	39	81	7	91	36	4	2	57	1.32
35909908--35910023	61	1.9	61	81	0	142	34	8	12	43	1.74
35920254--35920301	24	2.0	24	87	0	69	22	6	50	20	1.71
35923679--35923709	16	1.9	16	100	0	62	45	0	6	48	1.28
35923822--35923862	21	2.0	21	100	0	82	56	19	9	14	1.66
35926104--35926204	51	2.0	51	88	0	148	33	20	11	33	1.89
35927153--35927230	29	2.7	29	80	9	97	30	20	12	35	1.90
35929792--35929879	44	2.0	44	95	0	158	27	22	15	34	1.95
35931334--35931386	24	2.2	24	83	10	63	26	26	20	26	1.99
35935972--35936041	26	2.7	27	86	4	99	31	18	18	31	1.95
35941715--35941803	44	2.0	44	95	0	160	31	6	33	28	1.83
35943026--35943097	27	2.7	27	86	2	101	33	13	15	37	1.87
35943376--35943444	34	2.1	31	89	7	102	31	23	24	20	1.98
35943724--35943769	23	2.0	23	100	0	92	26	8	13	52	1.69
35947583--35947622	20	2.0	20	85	0	53	45	15	27	12	1.82
35948340--35948400	32	1.9	32	89	0	95	27	18	4	49	1.68
35956474--35956509	17	2.1	17	94	0	63	38	13	8	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35958886--35958966	26	3.1	26	92	0	135	37	24	19	18	1.94
35959091--35959169	27	2.9	27	81	5	88	24	12	21	41	1.87
35965158--35965209	26	2.0	26	92	0	86	34	23	23	19	1.96
35980741--35980800	27	2.2	27	80	19	72	31	13	10	45	1.76
35980560--35980949	134	2.9	134	81	3	430	30	15	13	40	1.86
35980770--35981150	206	1.8	206	82	1	494	29	14	14	41	1.85
35980974--35981326	137	2.6	136	81	3	417	31	16	14	38	1.88
35980973--35981421	134	3.3	134	79	4	438	31	15	13	39	1.86
35984823--35985059	25	10.0	23	74	18	186	45	15	11	27	1.80
35984756--35985059	47	6.5	47	91	1	432	43	15	12	28	1.83
35985997--35986067	28	2.6	27	86	6	97	25	29	12	32	1.93
35989791--35989833	19	2.3	19	88	8	61	60	4	2	32	1.30
35990035--35990072	9	4.2	9	80	12	51	31	0	0	68	0.90
35990009--35990066	29	2.1	27	84	9	73	25	0	1	72	0.94
35990015--35990070	20	2.8	20	81	7	53	30	0	1	67	1.01
35992454--35992509	28	2.0	29	92	3	96	19	14	8	57	1.63
35996713--35996800	45	2.0	45	93	4	151	32	22	19	25	1.97
35996811--35996946	50	2.7	52	82	7	172	30	27	17	24	1.97
36001596--36001653	28	2.1	28	96	0	107	44	22	8	24	1.80
36005389--36005929	108	5.0	108	89	5	811	33	18	17	30	1.94
36005903--36005944	18	2.3	18	88	8	59	30	7	7	54	1.54
36006057--36006143	4	20.8	4	74	13	68	70	4	4	20	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36006067--36006150	32	2.6	31	81	10	89	69	4	4	21	1.26
36006498--36006532	3	11.7	3	87	0	52	60	0	5	34	1.21
36006501--36006532	12	2.7	12	100	0	64	59	0	6	34	1.23
36008147--36008301	44	3.5	44	76	1	168	27	27	15	29	1.96
36008140--36008301	88	1.8	88	90	0	261	28	26	16	29	1.97
36008394--36008741	88	4.0	88	88	3	506	26	25	22	26	2.00
36008449--36008675	44	5.2	44	66	12	160	27	25	21	25	1.99
36008357--36009366	86	11.8	86	88	4	1084	26	23	20	28	1.99
36008997--36009309	43	7.3	43	62	12	122	27	21	21	30	1.98
36010451--36010497	21	2.2	21	84	0	58	25	36	10	27	1.89
36010591--36010665	8	9.6	8	83	11	102	12	13	0	74	1.07
36010582--36010664	22	3.7	23	81	15	93	13	14	0	72	1.13
36010582--36010665	31	2.7	31	87	8	111	13	14	0	72	1.12
36010598--36010666	23	3.0	22	85	4	93	11	13	0	75	1.05
36011523--36011622	11	8.5	11	71	14	58	5	6	7	82	0.96
36011566--36011608	10	4.0	10	82	11	50	2	0	13	83	0.74
36011566--36011608	20	2.0	22	86	8	63	2	0	13	83	0.74
36015648--36016187	108	5.0	108	89	6	804	33	18	17	30	1.94
36015670--36016187	217	2.4	218	91	4	848	33	18	16	30	1.94
36016161--36016202	18	2.3	18	88	8	59	30	7	7	54	1.54
36016315--36016401	4	20.8	4	74	13	68	70	4	4	20	1.24
36016325--36016408	32	2.6	31	81	10	89	69	4	4	21	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36016756--36016790	3	11.7	3	87	0	52	60	0	5	34	1.21
36016759--36016790	12	2.7	12	100	0	64	59	0	6	34	1.23
36018406--36018560	44	3.5	44	76	1	168	27	27	15	29	1.96
36018399--36018560	88	1.8	88	90	0	261	28	26	16	29	1.97
36018653--36019000	88	4.0	88	87	3	497	26	24	22	27	2.00
36018708--36018934	44	5.2	44	64	14	135	27	25	21	25	1.99
36018616--36019625	86	11.8	86	88	4	1084	26	23	20	28	1.99
36018990--36019137	75	2.0	75	95	0	269	27	22	20	28	1.99
36019431--36019568	43	3.2	43	62	8	109	26	20	23	29	1.99
36020709--36020755	21	2.2	21	84	0	58	25	36	10	27	1.89
36020849--36020922	8	9.6	8	80	14	93	12	13	0	74	1.08
36020840--36020922	15	5.5	15	83	12	100	13	14	0	72	1.13
36021780--36021879	1	100.0	1	73	0	56	4	6	6	84	0.88
36021780--36021879	11	8.5	11	73	17	67	4	6	6	84	0.88
36021823--36021879	25	2.3	25	85	8	80	1	3	7	87	0.71
36025927--36026333	108	3.8	108	92	4	667	34	19	16	29	1.94
36025905--36026327	217	2.0	216	93	1	731	34	19	16	29	1.94
36026307--36026348	18	2.4	17	84	11	57	30	9	7	52	1.61
36026460--36026556	4	22.8	4	75	19	65	72	4	4	19	1.18
36026504--36026573	5	14.4	5	82	10	60	72	2	2	21	1.10
36026460--36026581	41	2.9	41	81	12	108	71	4	4	19	1.21
36026913--36026947	3	11.7	3	87	0	52	60	0	5	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36026916--36026947	12	2.7	12	100	0	64	59	0	6	34	1.23
36028279--36028317	2	19.5	2	100	0	78	51	0	48	0	1.00
36030218--36030367	73	2.1	72	87	1	210	25	24	26	24	2.00
36030425--36030602	94	1.9	93	87	1	257	28	24	22	24	1.99
36031303--36031355	21	2.5	22	81	9	65	20	0	39	39	1.53
36031334--36031376	15	2.9	15	79	3	52	20	0	44	34	1.52
36035645--36035678	16	2.1	16	89	10	52	23	0	32	44	1.54
36036500--36036583	8	10.5	8	68	16	50	47	17	0	34	1.48
36036498--36036553	17	3.1	17	74	18	58	48	14	0	37	1.44
36036431--36036568	46	3.1	46	71	16	155	46	18	0	34	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199