genome.fa.s18.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  161  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52825256--52825580	17	18.8	17	66	16	105	33	13	11	41	1.80
52825246--52825328	33	2.5	33	82	7	105	40	13	10	34	1.79
52825279--52825338	18	3.6	16	78	10	66	45	10	8	36	1.68
52825321--52825581	35	7.5	35	70	11	133	31	13	11	43	1.79
52825331--52825433	52	2.0	52	88	0	152	32	14	9	43	1.78
52825416--52825581	70	2.4	69	77	8	167	31	12	12	43	1.79
52825711--52825752	21	1.9	23	85	9	61	38	7	9	45	1.64
52825733--52825785	16	3.3	15	82	12	61	32	7	9	50	1.62
52825694--52825768	37	2.0	37	82	10	91	36	8	9	46	1.65
52837648--52837853	54	3.5	54	67	17	160	28	14	20	36	1.92
52837565--52837889	123	2.6	122	93	1	533	27	14	21	37	1.91
52837873--52837907	17	2.0	18	88	5	54	17	11	5	65	1.43
52837890--52838669	73	10.7	73	92	0	1262	31	16	17	34	1.92
52837904--52838669	145	5.3	145	94	0	1282	31	16	18	34	1.93
52838617--52839049	54	8.0	54	91	3	678	29	15	17	37	1.91
52838617--52839049	212	2.0	215	90	4	685	29	15	17	37	1.91
52839065--52839100	13	2.8	13	91	0	54	25	8	5	61	1.46
52839291--52839325	14	2.4	15	90	4	54	71	2	0	25	1.00
52839321--52839391	30	2.4	30	85	4	90	30	21	4	43	1.71
52839758--52839795	18	2.1	18	95	0	67	55	39	0	5	1.23
52839815--52839866	27	1.9	27	92	7	88	69	0	30	0	0.89
52839827--52839873	20	2.2	22	88	7	71	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52839962--52839993	16	2.0	16	93	0	55	84	12	3	0	0.74
52839962--52840019	21	2.7	21	84	10	73	75	10	10	3	1.15
52840653--52840700	17	2.8	17	76	23	55	31	16	10	41	1.82
52840762--52841087	18	18.8	17	66	14	96	32	13	11	42	1.80
52840752--52840834	33	2.5	33	86	7	114	39	13	12	34	1.81
52840749--52840844	17	5.8	16	71	11	77	41	11	10	36	1.76
52840786--52840844	16	3.5	17	80	11	59	44	10	10	35	1.72
52840839--52841087	17	14.3	17	69	13	123	31	13	11	43	1.79
52840922--52841088	35	4.8	33	74	13	102	32	12	11	43	1.79
52841137--52841172	17	2.2	17	90	5	56	36	8	8	47	1.64
52841218--52841259	21	1.9	23	85	9	61	38	7	9	45	1.64
52841240--52841292	16	3.3	15	82	12	61	32	7	9	50	1.62
52841201--52841275	37	2.0	37	82	10	91	36	8	9	46	1.65
52846228--52846702	44	10.7	44	78	6	436	32	19	20	27	1.97
52846859--52846903	14	3.2	13	79	14	54	77	11	0	11	0.99
52846859--52846904	15	3.2	15	76	17	53	78	10	0	10	0.97
52852167--52852195	7	4.3	7	95	4	51	0	0	10	89	0.48
52855850--52856263	205	2.1	199	91	2	657	40	9	10	39	1.72
52859660--52859717	29	2.0	29	96	0	107	43	6	22	27	1.79
52862298--52862355	21	2.7	22	74	12	59	43	29	0	27	1.55
52865040--52865328	149	1.9	149	80	8	338	43	8	5	41	1.60
52865544--52865575	3	10.7	3	100	0	64	0	0	31	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52881602--52881656	3	18.0	3	88	3	74	60	0	5	34	1.20
52881602--52881655	18	2.9	18	91	2	90	59	0	5	35	1.21
52883233--52883734	50	10.0	50	72	11	341	23	19	24	33	1.97
52883277--52883734	100	4.6	100	89	2	652	22	19	24	33	1.97
52883277--52883986	200	3.5	199	86	7	1010	21	19	25	33	1.97
52883719--52883749	15	2.1	15	93	0	53	29	22	9	38	1.86
52883619--52883849	115	2.0	115	94	1	401	22	19	23	35	1.96
52883519--52883949	215	2.0	215	93	1	740	21	19	25	33	1.97
52883734--52883986	100	2.5	100	96	0	461	19	20	26	33	1.97
52883736--52883986	50	5.0	49	73	7	245	19	20	26	33	1.96
52896695--52896746	3	17.0	3	88	4	68	59	0	5	34	1.21
52896695--52896745	15	3.3	15	88	2	75	58	0	5	35	1.22
52896695--52896746	18	2.8	18	91	2	86	59	0	5	34	1.21
52896694--52896758	18	3.6	18	85	4	78	58	4	4	32	1.39
52897259--52897301	21	2.0	21	100	0	86	0	32	34	32	1.58
52898756--52898792	9	4.1	9	92	0	65	29	10	13	45	1.77
52898845--52898875	9	3.4	9	90	0	53	38	22	12	25	1.90
52902647--52902809	44	3.7	44	78	6	150	28	22	19	30	1.98
52902687--52903440	44	16.8	45	71	10	354	28	22	18	30	1.98
52902653--52903440	314	2.5	314	86	3	1093	28	22	18	30	1.98
52903519--52903626	51	2.1	51	82	0	126	31	24	13	30	1.94
52903555--52903713	87	1.8	87	83	0	210	27	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52903753--52903795	21	2.0	21	86	0	59	23	32	4	39	1.75
52903759--52903801	21	2.0	21	81	0	50	25	34	4	34	1.77
52904629--52904693	28	2.4	27	89	7	87	43	13	13	29	1.83
52904639--52904694	28	2.0	28	100	0	112	42	14	14	28	1.84
52914988--52915352	44	8.3	44	80	2	401	33	17	19	29	1.95
52915378--52915441	13	4.9	13	81	7	85	31	6	25	37	1.81
52916327--52916372	14	3.3	13	80	14	56	78	10	0	10	0.97
52916327--52916373	15	3.3	15	75	19	55	78	10	0	10	0.96
52916657--52916710	22	2.3	24	87	6	76	66	11	16	5	1.40
52931337--52931419	28	3.0	28	74	0	85	30	16	15	37	1.90
52932591--52932637	17	2.7	17	78	12	51	19	10	2	68	1.30
52932753--52932803	4	12.8	4	100	0	102	50	23	0	25	1.49
52933806--52933846	21	2.1	20	86	13	59	60	0	7	31	1.24
52940885--52940925	21	2.0	21	90	0	64	29	21	29	19	1.98
52947827--52947874	24	2.0	25	83	4	62	52	4	6	37	1.46
52951966--52952004	20	2.0	20	100	0	78	33	15	25	25	1.95
52955596--52970954	893	17.2	894	99	0	30282	42	22	13	21	1.88
52975529--52975561	15	2.2	15	89	10	50	66	0	9	24	1.20
52977592--52977653	30	2.1	31	82	11	76	40	1	9	48	1.46
52980520--52980552	12	2.8	12	86	4	50	30	9	9	51	1.64
52984849--52984925	19	3.9	19	75	12	66	33	11	5	49	1.62
52984895--52984968	21	3.7	20	76	8	78	32	13	8	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52984860--52984967	40	2.7	40	82	2	117	34	12	6	46	1.68
52984896--52984955	20	3.0	20	78	11	68	31	16	6	45	1.74
52986412--52986451	17	2.3	18	83	12	57	42	0	15	42	1.46
52990652--52990697	4	11.5	4	95	0	65	43	23	6	26	1.78
52990652--52990706	8	6.9	8	91	0	65	41	23	10	23	1.86
52991036--52991144	49	2.2	50	82	8	134	37	13	22	25	1.92
52999467--52999607	57	2.4	58	95	1	248	24	6	22	46	1.75
53000009--53000038	12	2.6	11	90	10	51	20	0	6	73	1.05
53003958--53004145	61	3.1	61	67	17	165	43	2	5	47	1.41
53003893--53004180	120	2.4	120	90	3	472	44	1	4	48	1.34
53004126--53004160	18	2.0	17	88	5	52	45	0	0	54	0.99
53004305--53004414	45	2.6	44	84	8	140	32	29	4	33	1.78
53004393--53004446	16	3.4	16	89	0	81	29	35	1	33	1.69
53005300--53005368	32	2.1	31	82	12	77	42	0	1	56	1.08
53005897--53005930	14	2.5	14	90	4	52	11	0	38	50	1.39
53006058--53006105	24	2.0	25	83	4	62	68	6	6	18	1.32
53010010--53010164	77	2.0	77	100	0	310	34	10	7	47	1.66
53010550--53011078	267	2.0	267	100	0	1058	28	7	22	41	1.80
53013033--53013098	17	3.6	18	81	8	62	12	0	9	78	0.95
53013035--53013088	19	2.9	19	81	10	60	12	0	7	79	0.92
53015999--53016041	12	3.6	12	87	0	50	67	18	0	13	1.23
53017781--53017805	13	1.9	13	100	0	50	28	8	24	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53026951--53028224	598	2.1	599	94	0	2244	32	16	16	34	1.91
53028196--53028252	28	2.0	28	96	0	105	29	28	17	24	1.97
53029806--53029870	20	3.2	20	76	8	60	50	0	6	43	1.27
53029806--53029856	19	2.6	20	81	3	59	52	0	5	41	1.25
53036873--53036916	18	2.4	18	88	7	63	56	0	0	43	0.99
53036873--53036916	16	2.6	18	85	7	56	56	0	0	43	0.99
53038310--53038366	23	2.5	24	82	8	73	42	3	3	50	1.36
53053044--53053087	18	2.5	17	82	10	52	27	0	6	65	1.17
53059217--53059262	22	2.0	23	91	8	76	50	4	2	43	1.34
53070473--53070526	22	2.3	24	84	6	67	7	7	9	75	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199