genome.fa.s18.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  31  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12863277--12863339	17	3.5	17	69	12	54	49	11	3	36	1.54
12863268--12863345	37	2.1	36	92	2	129	46	12	5	35	1.65
12863472--12863588	39	3.0	38	91	3	189	17	3	28	50	1.62
12863569--12863602	13	2.6	13	95	0	59	17	0	41	41	1.50
12864831--12864893	30	2.1	30	93	0	108	25	3	14	57	1.52
12865017--12865050	11	3.0	12	87	12	54	67	0	0	32	0.91
12870702--12871603	448	2.0	448	98	0	1750	31	21	14	31	1.94
12875205--12875242	13	2.9	13	85	11	51	31	0	2	65	1.06
12876267--12876324	27	2.1	28	87	6	84	37	1	10	50	1.47
12879233--12879390	46	3.5	45	91	2	248	25	22	17	34	1.96
12879370--12879407	14	2.6	15	87	4	51	18	28	13	39	1.88
12881301--12881342	21	2.0	21	85	0	57	45	9	7	38	1.64
12887649--12887724	23	3.3	23	76	20	63	46	1	1	51	1.17
12888201--12888254	20	2.6	21	85	8	76	35	0	1	62	1.06
12888201--12888246	21	2.2	21	92	3	76	34	0	0	65	0.93
12888816--12888851	11	3.0	13	88	11	51	75	0	5	19	1.00
12888830--12888854	11	2.3	11	100	0	50	84	0	8	8	0.79
12888817--12888855	19	2.0	20	90	5	62	76	0	7	15	0.99
12889190--12889255	30	2.2	28	77	15	69	30	10	7	51	1.64
12897004--12897037	16	2.1	16	88	0	50	50	14	17	17	1.79
12899838--12899878	21	2.0	21	90	0	64	29	21	29	19	1.98
12901745--12901806	29	2.1	29	96	0	115	33	14	17	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12901810--12901843	16	2.1	16	88	0	50	50	14	17	17	1.79
12906624--12906734	43	2.8	40	82	14	138	55	0	6	36	1.31
12906648--12906752	42	2.3	47	74	12	130	49	1	9	39	1.46
12906879--12906909	10	3.0	10	95	4	53	67	0	0	32	0.91
12907098--12907126	3	9.7	3	100	0	58	68	0	0	31	0.89
12909235--12909272	7	5.4	7	96	0	67	42	10	28	18	1.83
12909191--12909324	65	2.1	65	89	0	205	34	13	25	26	1.93
12909249--12909369	50	2.4	51	87	4	174	35	14	23	26	1.94
12912091--12912246	25	6.2	25	81	3	152	33	18	26	21	1.96
12912091--12912254	75	2.2	75	83	4	197	33	18	27	20	1.96
12912680--12912732	23	2.4	22	83	3	61	66	26	1	5	1.25
12914200--12914238	20	2.0	20	85	9	55	38	5	0	56	1.22
12920685--12920725	21	2.0	21	90	0	64	19	29	21	29	1.98
12926622--12926646	5	5.0	5	100	0	50	20	60	0	20	1.37
12937518--12937569	26	2.0	26	96	0	95	28	34	23	13	1.92
12937623--12937675	27	1.9	28	92	3	90	28	32	24	15	1.95
12937486--12937752	105	2.6	103	89	3	419	30	29	20	19	1.97
12938087--12938143	30	1.9	30	82	3	71	28	24	7	40	1.81
12951985--12952011	6	4.5	6	100	0	54	37	0	0	62	0.95
12952988--12953022	17	2.1	17	88	0	52	65	0	0	34	0.93
12964318--12964369	11	4.9	11	75	17	56	42	0	0	57	0.98
12964310--12964370	31	2.0	31	90	6	97	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12964514--12964675	46	3.6	46	92	4	260	31	15	23	29	1.95
12965871--12965936	29	2.3	29	82	7	73	39	0	3	57	1.14
12966231--12966499	40	6.8	40	82	6	296	42	15	4	36	1.69
12966251--12966499	20	12.4	20	76	11	208	42	16	5	36	1.70
12966231--12966502	80	3.4	80	83	5	336	42	15	4	37	1.69
12966616--12966700	20	4.3	19	71	14	64	34	12	8	44	1.73
12966601--12966682	40	2.0	40	90	0	128	40	15	4	39	1.69
12966791--12966842	21	2.5	21	90	3	79	44	13	0	42	1.44
12975019--12975044	3	8.7	3	100	0	52	65	0	0	34	0.93
12975159--12975240	8	9.1	9	74	22	59	41	1	1	56	1.15
12975159--12975232	17	4.0	18	73	21	64	41	1	1	55	1.17
12975210--12975239	8	3.8	8	100	0	60	46	0	0	53	1.00
12976077--12976111	15	2.3	15	90	0	52	54	0	14	31	1.40
12980127--12980154	3	9.3	3	100	0	56	32	0	0	67	0.91
12994057--12994121	32	2.1	31	85	2	85	29	13	6	50	1.66
13002023--13002075	27	2.0	27	96	0	97	15	20	39	24	1.91
13002272--13002335	8	7.4	8	73	16	56	48	17	0	34	1.47
13002274--13002328	19	3.0	18	77	12	58	49	18	0	32	1.48
13002099--13002580	241	2.0	245	96	1	891	47	10	3	39	1.55
13002636--13002722	22	3.7	22	82	14	120	32	1	13	52	1.48
13002631--13002730	49	2.0	49	94	0	173	33	1	13	53	1.46
13002712--13002783	8	8.4	8	71	14	54	36	1	15	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13008696--13008727	13	2.5	13	100	0	64	6	25	12	56	1.59
13017751--13017797	19	2.5	18	83	13	51	55	2	6	36	1.37
13018521--13018549	2	14.5	2	100	0	58	51	0	0	48	1.00
13018573--13018613	18	2.2	20	91	8	68	41	7	0	51	1.30
13024283--13024324	21	2.0	21	86	9	59	21	0	7	71	1.09
13025375--13025435	29	2.1	30	82	14	74	60	8	0	31	1.26
13028160--13028196	18	2.1	18	100	0	74	45	16	27	10	1.80
13030168--13030207	18	2.2	19	86	4	55	57	20	2	20	1.52
13030978--13031026	20	2.3	22	82	6	66	38	0	6	55	1.25
13035695--13035729	16	2.2	16	90	10	54	45	0	0	54	0.99
13040579--13040643	30	2.1	31	88	2	96	43	9	10	36	1.72
13041642--13041681	6	6.7	6	94	5	64	50	0	0	50	1.00
13051274--13051298	9	2.8	9	100	0	50	92	0	0	8	0.40
13065263--13065310	19	2.4	19	82	6	51	33	4	2	60	1.27
13073091--13073139	20	2.5	21	83	9	59	57	0	0	42	0.99
13073154--13073191	17	2.2	17	86	9	51	76	2	0	21	0.91
13073290--13073334	22	2.0	22	83	8	56	31	0	4	64	1.13
13097695--13097756	27	2.3	26	75	10	63	53	4	8	33	1.52
13098669--13098717	26	2.0	24	84	8	62	57	0	2	40	1.10
13099169--13099275	31	3.3	31	74	14	106	41	9	0	48	1.42
13099168--13099270	37	2.9	37	78	14	112	41	8	0	48	1.40
13099168--13099296	68	1.9	68	84	7	172	42	7	2	47	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13099375--13099413	20	1.9	21	89	5	62	51	0	0	48	1.00
13099993--13100029	17	2.2	17	95	0	65	24	2	21	51	1.61
13101203--13101339	46	3.0	45	86	7	181	34	9	27	29	1.88
13103088--13103139	23	2.3	23	86	6	70	50	1	0	48	1.12
13105699--13105736	19	2.0	19	89	0	58	60	2	5	31	1.33
13118712--13118757	22	2.1	22	88	8	67	52	2	0	45	1.13
13118716--13118768	22	2.4	22	83	3	61	60	3	0	35	1.15
13123498--13123545	3	16.0	3	82	0	60	58	6	0	35	1.23
13123499--13123547	18	2.7	18	93	0	80	55	8	0	36	1.30
13123498--13123545	12	4.0	12	91	0	69	58	6	0	35	1.23
13124251--13124290	20	2.0	20	85	9	55	2	15	5	77	1.04
13124421--13124488	31	2.3	28	78	9	73	41	2	1	54	1.24
13124467--13124505	21	1.9	20	84	5	51	46	2	0	51	1.14
13125224--13125250	6	4.5	6	100	0	54	29	0	70	0	0.88
13128129--13128162	15	2.3	15	100	0	68	38	8	41	11	1.73
13136001--13136080	40	2.0	40	97	0	151	38	22	8	30	1.84
13151541--13151659	48	2.5	48	90	1	186	36	28	11	22	1.90
13154503--13154598	49	1.9	51	89	4	151	37	27	8	27	1.85
13156670--13156708	18	2.2	18	95	0	69	20	30	17	30	1.96
13169067--13169105	14	2.8	14	80	0	51	35	10	12	41	1.77
13169316--13169478	58	2.8	57	78	10	145	44	1	3	50	1.30
13169349--13169398	20	2.4	21	93	6	84	48	0	2	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13169349--13169399	10	4.9	10	80	4	57	47	0	1	50	1.12
13169646--13169684	16	2.4	16	95	0	69	30	25	7	35	1.84
13171746--13171809	31	2.0	32	81	3	76	40	7	6	45	1.58
13173149--13173193	23	2.0	23	95	0	81	42	20	8	28	1.82
13175671--13175772	41	2.5	41	88	3	143	28	19	25	26	1.99
13177654--13177747	29	3.2	30	79	13	81	30	21	8	39	1.83
13178149--13178177	12	2.3	13	94	5	51	68	0	31	0	0.89
13178250--13178333	7	12.4	7	72	22	56	73	0	26	0	0.83
13178255--13178334	27	3.1	26	85	10	94	76	0	23	0	0.79
13178265--13178337	12	6.2	12	77	19	75	78	0	21	0	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199