genome.fa.s18.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  44  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17551923--17551977	23	2.5	22	80	8	60	49	7	0	43	1.30
17553039--17553192	38	4.4	38	77	18	188	22	18	12	46	1.83
17553096--17553147	26	2.0	26	100	0	104	26	19	11	42	1.85
17553058--17553185	64	2.0	64	95	0	229	24	18	12	44	1.84
17553548--17553611	33	1.9	34	90	3	103	20	0	14	65	1.26
17554409--17554442	16	2.1	16	94	0	59	55	0	14	29	1.40
17554471--17554503	16	2.1	16	100	0	66	51	0	18	30	1.46
17554567--17554663	9	10.8	9	72	22	62	46	14	0	39	1.45
17554571--17554790	34	6.2	34	72	22	175	48	11	0	39	1.45
17554602--17554634	16	2.1	16	100	0	66	45	24	0	30	1.53
17554621--17554813	31	6.0	31	82	10	210	48	10	2	38	1.50
17554568--17554663	47	2.0	49	87	6	142	46	14	0	38	1.45
17554684--17554727	22	2.0	22	95	0	79	47	11	0	40	1.39
17554712--17554772	17	3.8	15	74	19	52	50	6	0	42	1.28
17554681--17554790	9	12.0	9	69	21	52	50	9	0	40	1.34
17557848--17558017	66	2.6	65	78	7	175	44	18	25	12	1.84
17557999--17558077	21	3.8	21	84	0	86	39	18	37	3	1.69
17558431--17558606	43	4.1	43	81	5	194	23	17	31	27	1.97
17558451--17558638	43	4.4	41	78	9	153	28	17	30	23	1.97
17559293--17559346	27	2.0	26	82	10	65	51	1	1	44	1.22
17562677--17562719	22	1.9	23	90	4	70	74	6	6	11	1.21
17569156--17569194	18	2.2	17	86	13	53	33	0	20	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17569420--17569489	23	3.0	23	95	0	131	20	21	28	30	1.98
17569420--17569624	46	4.7	46	86	10	320	19	21	28	30	1.97
17569473--17569503	14	2.2	14	100	0	62	16	25	29	29	1.96
17569450--17569572	37	3.1	37	78	18	156	18	22	28	30	1.98
17569487--17569624	23	6.0	23	97	0	258	18	21	28	30	1.97
17569420--17569624	83	2.3	87	91	7	328	19	21	28	30	1.97
17584878--17585053	86	2.1	86	79	4	196	47	1	4	46	1.33
17589430--17589462	2	16.5	2	100	0	66	51	0	0	48	1.00
17589778--17589963	46	4.0	46	95	0	327	31	27	7	33	1.85
17591188--17591235	17	2.9	17	84	3	62	50	18	2	29	1.59
17591314--17591393	42	1.9	42	92	0	133	28	26	17	27	1.98
17599733--17599783	21	2.5	20	84	12	59	35	3	15	45	1.65
17603001--17603048	16	3.0	16	93	0	87	43	2	6	47	1.40
17603094--17603277	93	2.0	93	95	0	332	38	5	7	48	1.55
17606087--17606133	18	2.7	18	80	9	53	23	0	4	72	1.02
17608165--17608281	40	3.0	39	77	8	121	29	24	18	26	1.98
17608416--17608473	17	3.6	16	72	23	50	51	12	0	36	1.39
17609275--17609316	21	2.0	21	85	0	57	38	4	2	54	1.34
17614665--17614727	32	2.0	32	84	3	83	50	4	4	39	1.44
17614792--17614896	54	1.9	54	88	0	156	21	29	20	27	1.98
17615286--17615311	7	3.7	7	100	0	52	46	0	0	53	1.00
17617164--17617335	88	2.0	88	94	0	299	33	28	8	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17622221--17622300	40	2.0	41	95	2	144	62	10	27	0	1.27
17630355--17630389	16	2.1	17	89	5	54	40	22	0	37	1.55
17631162--17631193	16	1.9	17	93	6	57	3	18	3	75	1.08
17632802--17632870	23	2.8	24	77	16	79	24	26	20	28	1.99
17633712--17633740	7	4.3	7	91	8	51	86	0	13	0	0.58
17633712--17633736	13	1.9	13	100	0	50	88	0	12	0	0.53
17647165--17647194	9	3.3	9	100	0	60	36	0	43	20	1.52
17653384--17653432	7	7.1	7	79	4	55	26	30	6	36	1.81
17653384--17653432	14	3.6	14	80	5	64	26	30	6	36	1.81
17653379--17653432	27	2.0	27	92	0	90	25	31	5	37	1.79
17653390--17653427	20	1.9	20	88	0	58	23	34	5	36	1.78
17656732--17656756	2	12.5	2	100	0	50	52	0	0	48	1.00
17657929--17658023	9	10.4	9	75	8	68	67	0	2	30	1.02
17662584--17662622	19	2.1	18	86	13	53	0	20	0	79	0.73
17664270--17664346	29	2.6	29	79	4	82	49	15	12	22	1.78
17668704--17668740	2	18.5	2	100	0	74	0	48	0	51	1.00
17690116--17690158	13	3.4	12	84	15	52	23	0	2	74	0.93
17706401--17706460	31	1.9	31	83	6	77	51	8	0	40	1.32
17715484--17715630	56	2.5	59	84	11	194	30	21	25	22	1.98
17715752--17715877	66	1.9	66	96	0	234	19	18	35	26	1.95
17718435--17718483	7	7.0	7	88	0	62	30	0	28	40	1.57
17718918--17718953	15	2.4	15	90	0	54	55	11	0	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17718929--17719001	31	2.4	31	86	4	94	54	16	6	21	1.65
17718957--17719011	16	3.5	16	72	5	58	54	16	7	21	1.66
17719976--17720027	22	2.3	21	84	15	61	57	0	0	42	0.98
17720003--17720046	19	2.3	20	84	11	65	61	0	0	38	0.96
17719983--17720041	23	2.7	22	74	7	59	62	0	0	37	0.95
17721797--17721851	28	2.0	28	96	0	101	47	9	7	36	1.63
17729453--17729489	9	4.1	9	89	0	56	29	8	13	48	1.71
17729868--17729922	9	5.8	9	75	24	51	43	5	3	47	1.44
17729861--17729925	31	2.1	31	97	0	121	43	4	6	46	1.49
17730248--17730290	11	3.8	12	80	20	56	30	30	0	39	1.57
17730348--17730372	10	2.5	10	100	0	50	44	0	0	56	0.99
17731154--17731179	7	3.7	7	100	0	52	26	0	15	57	1.38
17734720--17735085	46	7.6	49	86	8	431	34	14	22	28	1.93
17734734--17735085	196	1.8	195	92	0	596	34	14	22	28	1.93
17735049--17735194	37	4.0	37	91	1	233	36	15	22	24	1.93
17734720--17735074	150	2.4	149	89	5	458	34	14	21	29	1.93
17736238--17736614	125	3.0	124	92	1	612	33	22	15	28	1.95
17742415--17742487	28	2.9	24	77	15	92	12	24	4	58	1.51
17750665--17750732	33	2.1	33	97	0	127	29	5	17	47	1.71
17752130--17752262	66	2.0	66	100	0	266	25	16	14	43	1.86
17756235--17756265	12	2.5	13	94	5	55	45	9	9	35	1.70
17757995--17758041	20	2.3	20	82	7	51	34	4	2	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17757945--17758250	148	2.1	147	94	1	535	42	1	1	53	1.23
17758143--17758189	20	2.3	20	82	7	51	34	4	2	59	1.29
17764219--17764256	16	2.3	17	86	4	51	39	0	2	57	1.12
17764281--17764316	17	2.2	17	90	5	56	38	2	2	55	1.29
17764520--17764597	18	4.3	18	83	4	95	38	2	1	57	1.20
17764409--17764567	70	2.3	70	90	4	241	41	2	3	52	1.33
17764550--17764599	17	2.9	17	81	3	64	42	0	2	56	1.11
17764660--17764698	19	2.0	20	85	5	53	38	5	0	56	1.22
17767981--17768011	12	2.5	13	94	5	55	45	9	9	35	1.70
17773914--17773952	16	2.3	18	86	8	55	48	0	7	43	1.31
17774158--17774219	22	2.9	21	77	15	56	48	4	0	46	1.23
17773873--17774695	254	3.2	252	82	4	939	38	8	6	46	1.60
17774421--17774453	16	2.0	17	88	5	50	45	0	9	45	1.35
17777773--17777806	16	2.1	16	88	0	50	50	14	17	17	1.79
17780607--17780647	21	2.0	21	90	0	64	29	21	29	19	1.98
17783174--17783238	29	2.3	27	77	15	76	33	4	0	61	1.16
17786566--17787068	251	2.0	249	97	0	943	28	16	14	40	1.88
17790399--17790449	20	2.5	21	79	17	63	54	1	0	43	1.11
17790424--17790486	20	3.2	19	75	18	58	63	3	0	33	1.10
17792606--17792970	102	3.5	104	92	4	598	18	19	30	30	1.96
17800249--17800300	26	2.0	26	96	0	95	13	23	34	28	1.92
17800172--17800538	103	3.6	104	95	1	627	19	20	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17804685--17804715	9	3.4	9	90	0	53	25	12	22	38	1.90
17810719--17810777	26	2.3	25	85	2	82	20	25	18	35	1.95
17810755--17810802	23	2.1	23	88	0	69	18	29	20	31	1.97
17810909--17810973	25	2.6	25	92	0	103	30	30	10	27	1.91
17813087--17813231	9	15.7	9	70	19	77	34	2	4	59	1.28
17813124--17813170	8	5.8	8	88	11	69	34	0	2	63	1.06
17813113--17813179	26	2.5	25	77	20	73	32	0	4	62	1.15
17813277--17813327	19	2.5	20	81	9	59	37	0	3	58	1.16
17813268--17813414	10	15.9	9	65	16	52	34	0	4	60	1.23
17813293--17813352	30	2.0	30	83	6	77	33	0	6	60	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199