genome.fa.s18.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  103  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34849087--34849223	69	2.0	70	79	1	150	43	18	17	20	1.89
34850511--34850545	7	5.3	7	93	6	56	14	71	0	14	1.15
34850511--34850544	6	5.3	6	89	10	50	14	70	0	14	1.17
34850511--34850545	13	2.6	14	86	13	56	14	71	0	14	1.15
34856357--34856429	30	2.5	31	86	6	98	42	9	2	45	1.51
34859291--34859358	35	1.9	36	87	3	102	45	8	5	39	1.60
34859330--34859621	35	8.3	35	78	7	234	46	10	13	29	1.75
34859329--34859620	53	5.5	53	78	10	231	46	10	13	30	1.76
34859330--34859620	18	16.5	17	73	13	198	46	10	13	29	1.76
34859647--34859697	17	2.9	17	73	2	57	41	7	5	45	1.57
34859649--34859729	35	2.3	36	85	6	103	40	8	7	43	1.63
34860162--34860220	26	2.4	24	86	8	82	0	16	0	83	0.66
34860162--34860219	18	3.5	17	72	11	57	0	17	0	82	0.66
34860240--34860336	43	2.2	43	85	1	122	10	20	44	24	1.83
34860456--34860513	18	3.1	18	80	12	64	1	15	0	82	0.74
34860456--34860513	11	5.2	11	81	10	64	1	15	0	82	0.74
34860621--34860658	20	1.9	21	89	10	62	0	34	0	65	0.93
34860611--34860658	21	2.3	20	83	13	62	0	35	0	64	0.94
34860669--34860716	23	2.0	24	88	4	71	6	12	14	66	1.42
34861125--34861227	30	3.4	30	74	12	88	42	3	20	33	1.70
34861201--34861258	30	1.9	30	82	6	73	41	3	20	34	1.69
34861755--34861927	89	1.9	90	89	1	267	31	20	12	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34861847--34864331	79	32.0	75	83	8	2117	35	20	15	27	1.94
34861870--34864359	159	16.0	159	84	6	2761	35	20	15	27	1.94
34861849--34864331	780	3.2	776	88	5	3301	35	20	15	27	1.94
34864154--34864287	66	2.0	66	94	0	232	38	18	13	29	1.89
34864075--34864359	145	2.0	144	89	2	437	37	19	15	27	1.92
34865204--34865276	10	7.6	10	73	13	55	2	5	8	83	0.88
34865204--34865274	29	2.5	28	82	12	92	2	5	7	84	0.85
34865199--34865275	30	2.6	29	81	8	84	3	6	6	83	0.92
34870190--34870214	4	6.2	4	100	0	50	52	0	24	24	1.48
34871939--34872006	35	1.9	36	87	3	102	44	8	7	39	1.64
34871977--34872250	18	15.6	18	77	8	235	45	9	13	31	1.77
34871977--34872250	35	7.8	35	78	9	202	45	9	13	31	1.77
34871977--34872250	53	5.2	53	75	11	235	45	9	13	31	1.77
34872043--34872250	53	3.9	53	80	8	255	44	9	15	30	1.78
34872278--34872358	17	4.7	17	72	6	74	43	8	7	40	1.63
34872278--34872358	34	2.4	34	87	6	110	43	8	7	40	1.63
34872317--34872352	16	2.2	16	90	0	54	44	13	8	33	1.74
34872785--34872845	17	3.6	17	73	6	61	1	19	0	78	0.83
34872861--34872966	42	2.6	41	81	13	123	8	24	45	21	1.80
34872861--34872960	43	2.3	43	88	5	141	9	23	47	21	1.79
34872861--34872977	43	2.8	42	83	7	105	9	23	45	21	1.81
34873096--34873171	22	3.4	21	78	10	71	5	14	1	78	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34873102--34873172	6	12.0	6	71	18	51	4	15	1	78	0.97
34873118--34873168	13	4.2	13	76	16	56	3	15	1	78	0.99
34873277--34873327	16	3.2	16	71	17	52	0	33	0	66	0.92
34873730--34873833	30	3.5	29	81	6	109	42	5	24	27	1.77
34880558--34880583	12	2.2	12	100	0	52	15	34	7	42	1.75
34884645--34885280	106	6.0	106	89	1	986	33	18	17	30	1.94
34887346--34887652	132	2.3	130	87	1	434	27	26	17	28	1.98
34887471--34887740	87	3.1	87	69	8	269	29	25	18	26	1.98
34887584--34887691	44	2.5	44	87	4	139	30	27	15	25	1.96
34887442--34887822	174	2.2	175	92	2	640	27	26	18	27	1.98
34887486--34887778	87	3.4	87	70	5	268	26	26	19	27	1.99
34887346--34887939	305	1.9	307	88	1	906	27	25	17	29	1.97
34887627--34888347	131	5.5	131	88	0	1023	26	24	19	29	1.98
34888125--34888355	44	5.2	44	66	11	105	27	22	18	30	1.97
34888863--34889023	47	3.3	48	67	19	127	45	8	16	28	1.77
34888841--34889031	97	2.0	97	90	0	301	47	8	16	27	1.75
34892350--34892376	3	9.0	3	100	0	54	66	0	0	33	0.92
34894245--34894285	14	2.9	15	85	7	50	53	2	0	43	1.13
34894496--34894537	20	2.0	21	90	4	68	52	2	0	45	1.13
34894866--34894910	16	2.9	16	83	9	58	46	0	2	51	1.13
34895147--34895183	19	1.9	19	88	0	56	40	5	2	51	1.39
34896166--34896213	25	1.9	25	86	0	69	33	18	16	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34901314--34901349	18	2.0	18	88	0	54	44	2	19	33	1.65
34903715--34903831	44	2.7	44	81	2	128	31	22	17	28	1.97
34903767--34903976	96	2.2	95	81	3	233	30	20	16	32	1.94
34903887--34904086	110	1.8	110	86	2	294	30	23	14	32	1.94
34904001--34904902	51	17.9	51	71	14	516	30	20	15	34	1.93
34903997--34904185	96	2.0	96	82	0	234	28	20	16	33	1.95
34903791--34904182	206	1.9	206	86	0	550	29	22	15	32	1.94
34904048--34904871	206	4.0	201	81	4	816	29	20	14	34	1.93
34903887--34904439	255	2.2	257	86	1	761	30	21	15	33	1.94
34904258--34904437	96	1.9	94	88	2	270	31	16	16	35	1.91
34904349--34904565	110	2.0	111	88	0	328	29	22	13	34	1.93
34904457--34904902	95	4.5	96	74	11	324	30	19	15	34	1.93
34903810--34904753	461	2.0	458	81	5	1078	30	20	14	34	1.93
34904726--34904893	45	3.6	45	76	7	174	30	22	16	30	1.95
34904668--34904900	95	2.4	96	89	0	360	31	20	15	32	1.94
34909529--34909646	25	4.8	25	68	16	95	15	22	23	38	1.92
34909606--34909663	24	2.4	24	85	5	73	17	22	24	36	1.95
34914849--34914912	4	16.8	4	76	12	55	67	0	4	28	1.11
34916342--34916383	22	1.9	23	85	9	61	47	7	2	42	1.43
34919929--34920277	175	2.0	174	98	0	680	32	13	9	43	1.76
34920258--34920317	30	2.0	30	93	0	102	38	11	18	31	1.87
34921199--34921225	3	9.0	3	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34927844--34927889	19	2.4	19	85	7	58	76	0	4	19	0.96
34935584--34935619	17	2.1	17	89	0	54	36	13	8	41	1.75
34936656--34937041	208	1.9	206	82	5	492	27	16	13	43	1.85
34940025--34940081	10	5.8	10	75	4	53	35	1	0	63	1.05
34940020--34940080	29	2.1	29	87	0	86	32	3	0	63	1.10
34945517--34945552	12	2.9	12	88	8	54	22	0	0	77	0.76
34948234--34948530	122	2.4	123	82	3	355	28	19	14	37	1.91
34951102--34951200	17	5.5	17	73	14	67	62	3	2	32	1.22
34951164--34951194	9	3.4	9	100	0	62	70	9	0	19	1.14
34951149--34951205	18	3.2	18	81	16	66	66	5	1	26	1.22
34951466--34951613	9	15.7	9	67	17	52	32	2	1	64	1.14
34951467--34951614	10	15.5	10	65	20	52	31	2	1	64	1.13
34951455--34951494	19	2.0	20	90	4	64	27	2	7	62	1.35
34951466--34951538	19	3.8	19	77	10	69	34	2	2	60	1.25
34951466--34951557	38	2.4	37	74	16	89	31	3	2	63	1.23
34951721--34951898	97	1.8	99	83	7	238	38	12	14	34	1.84
34954470--34954505	19	1.9	19	88	5	56	55	0	5	38	1.23
34958746--34958788	12	3.4	12	78	12	50	67	0	32	0	0.91
34958738--34958788	26	2.0	26	88	7	77	66	0	33	0	0.92
34963285--34963399	58	2.0	58	94	0	203	29	17	24	28	1.97
34971114--34971336	119	1.9	120	85	6	310	24	27	23	24	2.00
34971093--34971336	40	6.1	40	85	6	300	24	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34979028--34979246	119	1.8	120	84	6	302	24	28	23	24	2.00
34979003--34979246	40	6.1	40	84	6	291	25	27	22	24	2.00
34983428--34983488	32	1.9	32	86	3	88	24	8	13	54	1.66
34983432--34983505	31	2.3	32	81	2	87	28	9	10	51	1.68
34987950--34987989	21	1.9	21	89	0	62	57	0	12	30	1.36
34987997--34988037	21	2.0	21	85	0	55	43	9	9	36	1.71
34990342--34990407	8	8.4	8	81	8	82	50	13	12	24	1.76
34994431--34994484	15	3.3	15	74	18	54	42	0	3	53	1.18
34994561--34994622	20	3.2	19	75	25	58	53	0	0	46	1.00
34995633--34995676	16	2.7	16	89	10	63	2	31	0	65	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199