genome.fa.s18.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  134  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44724885--44724973	44	2.0	44	95	2	162	25	10	29	34	1.89
44726605--44726635	10	3.2	10	90	9	55	64	0	25	9	1.24
44726708--44726934	101	2.2	101	81	9	284	26	15	27	29	1.96
44726743--44726928	51	3.7	49	82	5	221	23	17	27	30	1.97
44726748--44726938	102	1.9	100	91	3	285	24	17	28	29	1.97
44726934--44727032	46	2.2	43	81	12	110	23	18	25	33	1.97
44727133--44727205	37	1.9	38	88	2	112	43	2	21	31	1.67
44728649--44728779	40	3.3	40	84	0	181	17	27	16	38	1.91
44728696--44728759	20	3.2	20	71	8	67	15	28	17	39	1.90
44728705--44728797	20	4.7	20	73	6	73	16	27	16	39	1.89
44734595--44734619	12	2.1	12	100	0	50	16	0	32	52	1.44
44736133--44736180	25	2.0	25	83	4	62	18	31	18	31	1.95
44736405--44736466	25	2.4	26	81	5	72	25	27	16	30	1.96
44741618--44741657	21	1.9	21	90	10	64	42	0	12	45	1.42
44742111--44742270	25	6.4	26	68	12	86	18	26	17	38	1.92
44745874--44745934	25	2.4	25	88	0	86	24	21	21	32	1.98
44745891--44745988	25	3.9	25	84	0	115	24	21	20	33	1.97
44751385--44751436	25	2.1	24	85	3	68	38	23	21	17	1.93
44761500--44761574	37	2.0	38	97	2	143	25	26	16	32	1.96
44764971--44765022	20	2.6	20	93	0	95	51	0	26	21	1.47
44770754--44770816	28	2.2	28	85	5	90	44	1	6	47	1.38
44770807--44770837	12	2.5	13	89	10	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44772807--44772851	23	2.0	23	90	0	72	40	6	8	44	1.62
44774009--44774109	46	2.2	46	96	3	186	43	29	1	24	1.65
44774008--44774089	26	3.4	25	68	31	72	43	28	2	25	1.67
44783841--44783940	51	2.0	51	86	4	139	45	3	26	26	1.68
44783910--44783951	22	1.9	22	90	9	68	38	7	30	23	1.82
44789718--44789763	24	1.9	24	82	8	58	36	19	19	23	1.95
44793421--44793465	23	1.9	24	86	4	65	26	51	2	20	1.59
44795103--44795132	15	1.9	16	93	6	53	50	6	20	23	1.71
44800690--44800744	25	2.2	25	78	9	60	43	5	20	30	1.74
44800744--44800785	21	2.0	22	85	4	59	57	0	7	35	1.26
44802175--44802313	44	3.2	44	73	9	106	27	22	17	33	1.96
44802331--44803396	44	24.4	44	87	2	1403	31	24	13	30	1.94
44802728--44802801	36	2.1	36	89	5	114	29	27	13	29	1.94
44810696--44810750	25	2.2	25	78	9	60	43	5	20	30	1.74
44810750--44810791	21	2.0	22	90	4	68	59	0	7	33	1.25
44811968--44812011	18	2.4	18	78	10	54	40	15	2	40	1.60
44840598--44840681	42	2.0	42	92	0	141	33	5	9	51	1.59
44846953--44847130	27	6.6	27	83	3	205	26	15	28	29	1.96
44846954--44847109	82	1.9	81	88	3	233	26	15	28	29	1.96
44846950--44847130	82	2.2	81	83	2	229	27	15	27	29	1.96
44861411--44861481	20	3.5	20	84	0	97	40	22	19	16	1.91
44861418--44861503	40	2.2	40	84	0	109	39	22	17	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44861418--44861519	40	2.5	40	82	3	107	39	22	17	20	1.93
44861453--44861529	40	1.9	40	81	5	93	37	22	18	22	1.94
44885788--44885826	20	2.0	19	95	5	69	0	12	0	87	0.55
44885798--44885824	14	1.9	14	100	0	54	0	11	0	88	0.50
44885792--44885826	17	2.1	17	89	10	54	0	11	0	88	0.51
44888400--44888463	17	3.6	17	74	15	67	29	12	10	46	1.76
44888391--44888460	36	1.9	36	97	0	131	30	12	11	45	1.78
44888391--44888443	17	2.9	19	71	21	58	30	13	11	45	1.78
44893511--44893574	17	3.6	17	70	15	58	29	12	10	46	1.76
44893503--44893571	36	1.9	36	93	0	120	28	13	11	46	1.78
44893503--44893556	19	2.9	19	74	15	60	27	12	12	46	1.79
44898563--44898603	19	2.3	19	91	8	68	56	2	17	24	1.53
44900557--44900592	18	2.1	17	89	5	54	22	2	0	75	0.94
44914255--44914293	17	2.4	16	87	8	53	61	2	7	28	1.37
44914322--44914369	20	2.4	19	77	16	53	54	0	0	45	0.99
44914661--44914700	14	2.7	16	77	18	50	37	0	0	62	0.95
44915068--44915117	23	2.2	23	100	0	100	50	4	12	34	1.58
44918329--44918383	23	2.4	23	90	0	83	47	12	1	38	1.52
44918963--44919010	14	3.6	13	78	13	53	33	0	0	66	0.92
44924060--44924087	14	2.0	14	100	0	56	28	21	28	21	1.99
44928136--44928231	31	3.1	31	92	3	165	32	9	12	45	1.74
44928783--44928886	47	2.1	48	83	11	124	75	10	11	2	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44928777--44928872	8	10.4	9	67	19	56	75	10	11	3	1.17
44928841--44928888	13	3.5	13	80	8	51	75	10	12	2	1.14
44928810--44928884	39	1.9	39	81	5	89	72	12	13	2	1.24
44935162--44935226	26	2.5	26	85	5	78	27	20	26	26	1.99
44938899--44939000	25	4.0	25	73	12	75	32	23	24	19	1.98
44938940--44939000	25	2.5	25	81	2	79	32	24	26	16	1.96
44939027--44939101	25	2.9	24	72	18	62	33	22	24	20	1.97
44941677--44941725	25	2.0	25	87	0	71	40	0	14	44	1.45
44942163--44942213	20	2.6	19	79	11	59	50	1	25	21	1.59
44943645--44943718	19	3.8	19	83	1	94	43	21	28	6	1.78
44946804--44946840	18	2.1	18	94	0	65	8	32	13	45	1.73
44950800--44950826	14	1.9	14	100	0	54	51	25	14	7	1.68
44950875--44950904	2	15.0	2	100	0	60	0	50	0	50	1.00
44952202--44952441	83	3.0	75	75	14	205	20	14	19	46	1.84
44952235--44952438	83	2.6	79	80	11	220	20	13	21	44	1.85
44952656--44952682	3	9.0	3	100	0	54	33	33	33	0	1.58
44954369--44954396	13	2.2	13	100	0	56	46	7	25	21	1.76
44959211--44959327	27	4.3	27	78	6	121	28	25	12	33	1.93
44959267--44959347	27	3.0	27	83	3	101	28	25	13	32	1.94
44965488--44965527	20	2.0	20	90	0	62	50	12	10	27	1.72
44965511--44965548	14	2.7	14	87	0	58	39	18	7	34	1.80
44965975--44966015	17	2.3	18	87	4	57	17	14	4	63	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44966037--44966084	18	2.8	17	75	9	53	47	6	0	45	1.27
44970367--44970474	44	2.5	43	82	10	132	25	18	23	33	1.97
44973241--44973386	50	2.9	49	80	6	175	26	16	26	31	1.96
44973603--44973634	16	2.0	16	93	0	55	59	0	15	25	1.36
44977407--44977447	17	2.3	18	83	4	57	14	12	4	68	1.36
44977415--44977458	23	1.9	23	86	9	63	18	6	4	70	1.27
44982575--44983690	371	3.0	369	91	0	1786	37	21	10	30	1.88
44986126--44986193	29	2.3	29	85	9	86	41	13	26	19	1.88
44986098--44986266	87	1.9	87	83	2	214	38	15	23	21	1.92
44992455--44992497	21	2.0	21	86	0	59	23	34	6	34	1.82
44995852--44995923	36	2.0	36	100	0	144	25	11	19	44	1.83
45007250--45007359	35	3.1	35	75	7	116	29	22	16	31	1.96
45007250--45007378	35	3.7	35	75	8	111	27	23	19	30	1.98
45011261--45011445	79	2.3	81	83	7	227	24	22	27	24	2.00
45011262--45011445	40	4.6	40	82	9	207	25	22	27	24	2.00
45011314--45011478	79	2.1	79	83	6	201	26	21	27	24	1.99
45019153--45019337	79	2.3	81	83	7	227	24	22	27	24	2.00
45019154--45019337	40	4.6	40	82	9	207	25	22	27	24	2.00
45019206--45019370	79	2.1	79	83	6	201	26	21	27	24	1.99
45024187--45024224	19	2.0	19	100	0	76	26	21	36	15	1.93
45029630--45029687	24	2.5	23	76	15	66	29	1	6	62	1.31
45029644--45029694	24	2.1	24	82	7	59	39	1	3	54	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45032775--45032838	26	2.5	26	81	0	74	39	20	21	18	1.93
45033021--45033325	81	3.8	81	82	3	355	23	16	18	41	1.89
45033021--45033325	27	11.3	27	81	3	292	23	16	18	41	1.89
45033036--45033325	54	5.4	54	85	1	359	24	15	18	42	1.89
45033603--45033640	15	2.4	17	86	13	62	60	2	10	26	1.43
45033617--45033673	3	18.7	3	75	10	53	64	3	3	28	1.26
45033907--45033934	4	7.0	4	100	0	56	75	0	0	25	0.81
45034549--45034591	14	3.2	13	83	6	50	16	4	0	79	0.90
45036816--45036896	25	3.2	25	85	0	108	29	18	24	27	1.98
45036816--45036912	50	1.9	50	82	0	122	29	17	25	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199