genome.fa.s18.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  165  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53844678--53844770	9	10.3	9	70	19	61	44	1	1	53	1.14
53844668--53844776	9	11.9	10	70	20	55	44	0	0	53	1.13
53844796--53844858	17	3.6	16	76	16	63	50	0	1	47	1.10
53844809--53844855	9	5.2	9	77	10	51	57	0	2	40	1.11
53844809--53844848	19	2.1	19	85	0	53	60	0	2	37	1.11
53865528--53865787	54	4.8	54	80	7	206	30	24	29	15	1.96
53865617--53865826	57	3.7	57	85	3	257	27	26	31	14	1.95
53865589--53865787	27	7.3	27	88	3	281	28	25	30	16	1.96
53866537--53866577	21	2.0	20	90	4	64	31	0	7	60	1.24
53866642--53866846	67	3.1	65	63	21	161	37	10	4	47	1.59
53866586--53866851	135	2.0	135	99	0	523	35	9	6	49	1.59
53867469--53867516	22	2.2	22	92	0	78	29	27	0	43	1.55
53871035--53871260	124	1.8	124	94	0	398	32	22	16	28	1.96
53872081--53872111	16	1.9	16	93	0	53	16	3	6	74	1.16
53872330--53872355	9	2.9	9	100	0	52	57	0	0	42	0.98
53873159--53873203	24	1.9	23	82	13	56	48	0	8	42	1.34
53873576--53873618	3	14.3	3	83	9	52	30	0	0	69	0.88
53873610--53873666	24	2.4	24	77	8	62	26	10	7	56	1.59
53874891--53874989	23	4.3	23	90	0	153	31	24	21	23	1.98
53874891--53874988	46	2.1	46	94	0	169	31	24	21	22	1.98
53880217--53880255	16	2.4	16	86	0	60	61	2	0	35	1.10
53880706--53880748	20	2.1	21	91	4	70	51	9	4	34	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53883315--53883341	14	1.9	14	100	0	54	18	7	7	66	1.40
53889779--53889816	20	1.9	20	89	10	60	18	5	15	60	1.53
53891100--53891532	207	2.1	207	82	1	528	32	22	23	22	1.98
53891127--53891555	69	6.2	69	81	0	428	32	23	22	21	1.98
53896031--53896085	20	2.8	20	78	8	60	36	0	9	54	1.32
53899641--53899680	11	3.6	11	79	0	53	55	0	17	27	1.43
53901820--53901874	26	2.1	26	86	6	76	27	16	23	32	1.96
53904456--53904513	23	2.7	21	70	19	57	48	10	15	25	1.77
53907080--53907108	9	3.2	9	100	0	58	55	13	10	20	1.68
53907872--53907938	10	6.8	10	82	3	55	37	7	0	55	1.28
53907870--53907937	20	3.5	20	75	4	75	36	7	0	55	1.28
53907874--53907930	19	2.9	19	76	2	60	36	8	0	54	1.32
53924300--53924369	23	3.1	23	78	10	65	58	4	4	32	1.37
53925576--53925618	18	2.3	19	76	4	52	9	4	39	46	1.57
53928129--53928240	21	5.3	21	82	0	107	3	43	16	35	1.66
53928235--53928381	66	2.2	65	86	4	197	15	25	17	41	1.89
53933725--53933781	25	2.3	25	78	0	60	36	7	14	42	1.72
53933886--53933996	9	12.6	9	73	17	65	37	1	16	44	1.58
53933828--53933987	75	2.2	72	84	5	196	41	1	14	42	1.56
53933959--53933991	16	2.1	16	100	0	66	30	0	24	45	1.53
53933886--53934119	82	2.8	81	83	13	264	38	3	13	44	1.60
53934018--53934069	22	2.4	22	90	0	86	42	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53934788--53934832	21	2.1	21	87	0	63	48	11	26	13	1.75
53936382--53936426	21	2.2	20	88	11	65	13	6	0	80	0.91
53936803--53937057	93	2.8	89	89	5	386	45	25	1	27	1.64
53937039--53937077	21	1.9	21	89	5	62	38	41	0	20	1.53
53937739--53937850	41	2.8	41	86	4	138	33	27	23	15	1.94
53937780--53938036	113	2.3	112	91	4	408	32	24	23	19	1.97
53937639--53937963	154	2.1	153	89	5	494	32	25	23	18	1.97
53937951--53938105	74	2.1	74	89	1	231	30	24	21	23	1.99
53938218--53938242	12	2.1	12	100	0	50	32	36	24	8	1.84
53943285--53943383	39	2.6	38	80	12	96	55	2	6	36	1.36
53946208--53946415	91	2.3	91	89	2	310	44	3	4	47	1.39
53946240--53946383	47	3.1	46	64	25	106	43	2	4	50	1.33
53946248--53946390	44	3.2	43	66	21	105	45	2	3	48	1.31
53946556--53946597	15	2.7	16	82	14	52	45	0	2	52	1.13
53946547--53946588	15	2.9	15	82	10	52	47	0	0	52	1.00
53948992--53949036	23	2.0	23	86	8	65	20	4	6	68	1.29
53970752--53970783	15	2.0	17	88	11	50	56	3	0	40	1.15
53972995--53973097	13	7.6	13	73	8	80	30	24	16	29	1.96
53973758--53973794	19	1.9	19	94	0	65	35	0	13	51	1.41
53975571--53975654	42	2.0	42	95	0	150	30	21	15	32	1.94
53978109--53978138	15	2.0	15	93	0	51	43	33	0	23	1.54
53978152--53978328	89	2.0	89	86	2	248	43	28	0	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53978171--53978351	89	2.0	89	82	4	222	43	25	1	28	1.64
53978413--53978450	7	5.4	7	96	0	67	31	36	0	31	1.58
53978866--53979016	41	3.7	41	88	0	230	31	21	19	27	1.98
53981113--53981393	18	15.9	17	78	11	239	49	10	9	30	1.70
53981113--53981390	35	7.9	35	78	12	266	49	9	10	30	1.69
53981067--53981415	87	4.0	86	77	11	291	47	10	10	31	1.72
53981543--53981578	17	2.1	17	89	5	54	30	8	13	47	1.73
53981944--53981989	14	3.0	15	84	12	58	0	23	0	76	0.79
53982121--53982155	18	1.9	18	88	0	52	0	17	2	80	0.84
53982239--53982310	32	2.2	32	82	4	92	0	26	0	73	0.83
53982669--53982867	30	6.7	29	79	11	183	39	5	21	34	1.75
53982669--53982867	59	3.4	57	84	7	231	39	5	21	34	1.75
53982669--53982868	89	2.3	89	81	4	226	39	5	21	34	1.75
53983076--53984045	75	12.6	76	83	6	1011	35	20	16	27	1.94
53983076--53984040	151	6.3	150	85	7	1024	35	20	16	27	1.94
53988924--53988956	4	8.2	4	100	0	66	51	0	24	24	1.48
53991080--53991223	18	8.0	18	71	16	93	43	9	13	33	1.76
53991080--53991215	73	1.9	73	81	6	168	45	10	13	30	1.76
53991322--53991426	17	5.6	18	70	20	72	36	7	14	41	1.74
53991744--53991785	17	2.5	17	88	11	61	0	19	0	80	0.70
53991743--53991785	16	2.7	15	86	13	59	0	18	0	81	0.69
53991912--53991951	14	2.9	14	85	10	55	0	15	5	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53992068--53992135	22	3.5	18	78	18	66	0	25	0	75	0.81
53992521--53992703	30	6.2	28	81	7	179	40	3	20	35	1.71
53992532--53992702	88	1.9	88	84	4	229	41	4	19	34	1.71
53995074--53995119	19	2.3	19	88	7	65	60	2	0	36	1.09
53997503--53997552	3	16.7	3	82	0	55	56	0	6	38	1.24
53997500--53997550	12	4.3	12	85	2	68	56	0	5	37	1.23
53997503--53997552	15	3.3	15	85	0	73	56	0	6	38	1.24
53999379--53999411	2	17.0	2	93	6	59	51	0	0	48	1.00
53999595--53999632	8	4.8	8	96	0	67	63	2	0	34	1.09
54007471--54007510	3	13.3	3	89	0	62	5	0	30	65	1.14
54014726--54014795	23	3.1	23	78	10	65	58	4	4	32	1.37
54017093--54017128	19	1.9	19	88	5	56	41	5	5	47	1.50
54017115--54017171	20	2.9	20	81	2	71	35	0	7	57	1.26
54029300--54029349	17	3.1	16	83	11	59	42	6	2	50	1.38
54040066--54040110	23	2.0	23	86	8	65	20	4	6	68	1.29
54049738--54049805	32	2.1	34	86	5	95	38	2	1	57	1.23
54053309--54053409	43	2.3	43	94	0	175	17	16	26	38	1.92
54053309--54053458	43	3.5	43	83	5	151	20	17	25	36	1.94
54055703--54055742	22	2.0	21	85	14	57	27	12	20	40	1.88
54055802--54055861	22	2.7	22	73	2	66	35	15	20	30	1.93
54065518--54065613	46	2.1	45	83	9	115	36	20	17	25	1.94
54068602--54068651	12	4.2	12	73	12	50	34	14	0	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54068677--54068721	23	2.0	22	83	12	56	40	6	2	51	1.41
54068939--54068978	17	2.4	16	87	4	53	42	10	5	42	1.60
54073993--54074027	18	1.9	18	100	0	70	82	5	11	0	0.82
54073994--54074026	6	5.5	6	86	13	50	84	3	12	0	0.72
54075392--54076436	132	7.9	132	93	0	1700	29	18	23	28	1.98
54076391--54076503	44	2.6	44	89	0	172	29	15	26	29	1.96
54078056--54078100	23	2.0	22	83	12	56	40	6	2	51	1.41
54078320--54078359	17	2.4	16	87	4	53	42	10	5	42	1.60
54082675--54082719	23	2.0	23	86	8	65	20	4	6	68	1.29
54086316--54086340	11	2.3	11	100	0	50	80	0	20	0	0.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199