genome.fa.s18.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  95  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32485699--32485822	54	2.3	53	84	4	160	43	19	17	19	1.88
32496126--32496351	41	5.5	41	88	2	312	15	18	28	37	1.91
32496130--32496391	82	3.2	82	84	3	314	17	18	25	37	1.93
32496130--32496391	123	2.1	123	83	4	314	17	18	25	37	1.93
32497927--32498062	66	2.1	66	91	0	218	42	18	25	13	1.87
32498414--32498544	43	3.0	43	86	2	192	28	18	26	26	1.98
32510220--32510573	125	2.8	125	89	4	570	30	14	21	33	1.94
32513633--32513657	10	2.5	10	100	0	50	48	0	8	44	1.32
32513649--32513977	56	5.9	55	86	6	486	46	5	11	35	1.65
32513640--32513976	110	3.0	110	96	1	611	47	5	11	35	1.64
32513975--32514294	29	10.9	29	89	3	453	22	0	32	45	1.53
32514126--32514176	11	4.5	11	74	13	50	17	0	41	41	1.50
32513977--32514309	121	2.8	119	89	4	501	22	0	31	45	1.53
32514274--32514399	46	2.8	45	87	4	175	26	0	31	41	1.61
32514322--32514386	5	13.2	5	84	9	64	21	0	36	41	1.53
32514452--32514500	25	1.9	26	83	4	64	36	12	6	44	1.67
32514598--32514638	21	2.0	21	85	0	55	4	26	31	36	1.78
32515584--32515608	7	3.6	7	100	0	50	60	12	0	28	1.32
32516220--32516257	17	2.2	17	90	0	58	18	23	42	15	1.89
32519142--32519177	11	3.1	11	85	14	54	38	2	0	58	1.13
32519142--32519180	13	3.2	12	86	13	53	41	2	0	56	1.13
32529389--32529424	15	2.5	14	86	8	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32530575--32530605	13	2.4	13	94	0	53	25	0	9	64	1.24
32532246--32532412	2	85.0	2	83	3	214	42	0	57	0	0.98
32538787--32538957	27	6.3	27	85	4	227	20	19	21	39	1.93
32538789--32538960	54	3.2	54	87	1	254	20	18	20	40	1.92
32538787--32538957	82	2.1	81	87	1	243	20	19	21	39	1.93
32539612--32539658	24	1.9	25	83	12	62	23	36	2	38	1.67
32542496--32542637	50	2.8	50	86	0	203	28	22	28	20	1.98
32558525--32558572	21	2.4	21	86	10	66	56	4	0	39	1.19
32562319--32562368	25	2.0	24	84	3	64	36	24	26	14	1.93
32562348--32562410	25	2.5	25	86	0	81	28	22	25	23	1.99
32562365--32562412	25	1.9	25	95	0	87	27	20	25	27	1.99
32567238--32567311	34	2.2	34	97	0	139	47	14	8	29	1.73
32568401--32568443	18	2.4	18	88	0	59	41	44	2	11	1.53
32568543--32568591	17	2.8	17	87	3	53	28	12	18	40	1.86
32568530--32568583	27	2.0	27	89	7	83	25	14	20	38	1.91
32568552--32568591	17	2.3	18	91	4	64	30	10	17	42	1.82
32568932--32568967	16	2.2	16	90	9	56	19	5	0	75	1.00
32570795--32570901	10	10.6	10	69	24	57	67	0	31	0	0.97
32570795--32570882	4	23.0	4	74	21	57	69	1	29	0	0.96
32570795--32570881	14	6.5	14	67	19	60	68	1	29	0	0.96
32570794--32570951	44	3.6	45	81	12	168	67	1	31	0	1.04
32570810--32570883	14	5.1	14	73	12	69	70	1	28	0	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32570780--32570908	49	2.7	48	79	12	142	65	0	33	0	0.98
32571336--32572833	285	5.3	284	87	6	2241	50	6	12	30	1.64
32575064--32575090	11	2.5	11	100	0	54	37	7	14	40	1.74
32578121--32578209	27	3.3	27	95	0	160	17	33	32	15	1.92
32585759--32585813	19	2.9	19	81	7	51	34	9	25	30	1.87
32596140--32596235	45	2.1	45	82	3	113	31	26	14	28	1.95
32597691--32597844	28	5.5	28	90	0	227	31	10	26	31	1.90
32598565--32598918	47	7.6	48	72	6	282	27	13	18	40	1.88
32598618--32598915	23	12.8	23	68	12	117	26	13	18	40	1.88
32598583--32598915	93	3.6	93	92	0	535	27	13	18	41	1.87
32599431--32599610	50	3.7	49	83	5	215	20	32	20	26	1.97
32603096--32603658	114	4.9	114	75	10	443	31	18	22	27	1.97
32603093--32603524	229	1.9	227	84	6	586	31	18	22	27	1.97
32603150--32603658	229	2.2	228	80	5	569	31	18	22	27	1.97
32604000--32604054	22	2.5	22	91	2	85	16	0	38	45	1.47
32605219--32605312	44	2.1	44	90	3	145	23	32	8	35	1.85
32606936--32607028	35	2.7	35	90	3	145	33	4	3	59	1.33
32607036--32607091	16	3.3	17	80	9	78	37	16	3	42	1.65
32607041--32607113	34	2.3	33	86	11	100	41	16	2	39	1.63
32607057--32607145	47	1.9	45	84	4	115	44	13	1	40	1.51
32607190--32607274	24	4.0	21	75	14	68	52	18	1	27	1.52
32607204--32607258	12	4.8	12	88	4	78	52	16	1	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32607197--32607265	24	3.0	24	87	8	92	53	17	1	27	1.52
32607215--32607274	12	5.7	10	90	5	68	55	16	0	28	1.42
32607214--32607367	25	6.5	24	69	21	76	55	15	1	27	1.49
32607235--32607399	71	2.3	71	95	3	296	56	15	1	26	1.47
32607233--32607629	95	4.7	83	80	14	401	52	16	2	27	1.58
32607480--32607507	12	2.3	12	100	0	56	53	14	0	32	1.41
32607581--32607645	19	3.6	19	78	19	84	50	18	1	29	1.56
32607614--32607717	9	12.2	9	81	11	112	46	22	1	29	1.63
32607610--32607717	16	6.9	16	75	17	86	47	21	1	29	1.61
32607614--32607717	25	4.1	25	81	4	136	46	22	1	29	1.63
32613154--32613222	21	3.3	21	85	0	75	37	20	39	2	1.68
32613208--32613234	12	2.2	12	100	0	54	40	18	40	0	1.51
32613649--32613764	42	2.7	42	82	5	126	30	23	19	26	1.98
32613662--32613782	42	2.8	43	85	6	149	28	23	19	28	1.99
32613648--32613782	43	3.2	42	83	6	148	27	22	21	28	1.99
32613661--32613831	43	4.0	42	82	8	143	25	22	18	33	1.97
32614082--32614182	52	1.9	52	87	0	148	36	10	8	43	1.71
32614381--32614417	19	1.9	19	89	10	58	59	18	2	18	1.50
32614649--32614700	20	2.7	19	85	5	61	30	0	7	61	1.24
32614656--32614700	18	2.3	20	85	7	58	35	0	6	57	1.25
32617442--32617516	29	2.6	30	79	10	93	60	0	5	34	1.20
32618576--32618638	28	2.2	30	82	5	76	47	12	0	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32625259--32625292	15	2.2	16	89	5	52	26	2	5	64	1.30
32629167--32629210	21	2.1	21	83	8	54	63	4	4	27	1.33
32633163--32633213	21	2.5	20	80	3	57	41	25	17	15	1.89
32633163--32633280	42	2.7	42	77	11	114	38	25	20	16	1.92
32633163--32633293	23	6.0	22	78	15	130	38	24	20	16	1.93
32634696--32634770	5	15.0	5	100	0	150	60	0	0	40	0.97
32636907--32637475	291	2.0	291	97	0	1084	33	24	12	30	1.92
32638325--32638377	18	2.9	18	80	2	61	41	45	1	11	1.51
32638419--32638453	6	5.8	6	100	0	70	65	17	0	17	1.27
32638493--32638577	9	9.4	9	82	7	50	29	11	17	41	1.85
32638493--32638577	18	4.7	18	82	0	89	29	11	17	41	1.85
32638509--32638577	27	2.5	28	83	4	88	28	11	17	42	1.84
32641646--32641712	23	2.9	23	90	0	89	38	23	19	17	1.93
32641604--32641716	46	2.6	42	75	19	117	40	23	17	17	1.91
32643056--32643121	5	13.6	5	93	6	118	60	0	0	39	0.97
32645788--32645856	25	2.7	26	80	6	79	20	23	20	36	1.95
32653883--32653928	2	23.0	2	95	0	83	47	0	50	2	1.13
32655577--32655640	17	3.6	17	74	15	67	26	12	14	46	1.79
32655569--32655639	36	2.0	36	97	0	133	25	12	15	46	1.81
32655568--32655624	19	3.1	19	71	19	66	26	12	15	45	1.82
32660688--32660751	17	3.6	17	74	15	67	26	12	14	46	1.79
32660680--32660750	36	2.0	36	97	0	133	25	12	15	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32660679--32660735	19	3.1	19	71	19	66	26	12	15	45	1.82
32660945--32661041	49	2.0	48	93	2	167	19	13	23	43	1.86
32662328--32662372	22	2.0	22	87	8	65	37	0	6	55	1.26
32662495--32662548	23	2.3	23	87	0	81	57	11	0	31	1.34
32665401--32665538	20	6.9	20	77	6	100	20	20	21	38	1.94
32665421--32665547	40	3.2	40	83	5	168	18	19	22	40	1.92
32671621--32671686	31	2.1	31	85	0	87	46	10	9	33	1.70
32674226--32674293	26	2.7	26	86	6	95	36	19	25	19	1.94
32675981--32676011	6	5.3	6	96	3	55	48	0	12	38	1.42
32677965--32678020	15	3.7	15	80	0	58	33	16	1	48	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199