genome.fa.s18.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  86  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30339974--30340097	30	4.1	30	93	1	203	43	6	23	26	1.78
30344662--30344769	15	7.2	15	67	12	78	45	7	21	25	1.78
30344656--30344779	30	4.1	30	92	1	194	44	6	23	25	1.77
30349472--30349616	74	2.0	74	92	0	245	42	12	21	24	1.87
30350805--30350843	18	2.2	17	86	13	53	33	0	20	46	1.51
30350962--30350990	8	3.6	8	100	0	58	24	13	27	34	1.93
30351077--30351174	23	4.3	23	93	2	171	20	20	26	32	1.97
30351077--30351174	45	2.2	46	92	3	171	20	20	26	32	1.97
30357671--30357722	19	2.7	19	80	13	54	42	3	1	51	1.31
30370578--30370623	18	2.6	18	82	0	56	32	4	4	58	1.37
30373370--30373445	6	12.7	6	87	0	80	18	64	3	13	1.43
30373370--30373445	18	4.2	18	86	0	89	18	64	3	13	1.43
30373491--30373553	15	4.2	15	79	0	63	14	63	3	19	1.43
30373495--30373554	30	2.0	30	86	0	84	13	63	3	20	1.43
30373495--30373553	9	6.6	9	77	11	50	13	64	3	18	1.42
30373563--30373604	12	3.5	12	83	0	57	28	45	11	14	1.80
30373625--30373665	21	2.0	21	90	0	64	14	63	0	21	1.30
30373704--30373750	24	2.0	24	87	8	69	38	40	6	14	1.72
30374799--30374875	19	3.8	19	77	11	82	38	5	15	40	1.70
30375362--30375431	35	2.0	35	81	15	83	21	5	2	70	1.22
30375496--30375556	22	2.6	22	85	12	70	31	1	3	63	1.20
30377268--30377310	13	3.4	12	84	9	50	30	0	2	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30381404--30381485	19	4.3	19	70	21	55	31	0	4	63	1.15
30381384--30381468	37	2.2	36	81	8	89	28	1	5	64	1.24
30381436--30381476	21	2.0	20	90	9	64	31	0	9	58	1.31
30381451--30381515	29	2.2	30	86	8	89	32	0	6	61	1.21
30385428--30385456	12	2.3	13	94	5	51	75	6	0	17	1.01
30397932--30397974	22	2.0	22	85	0	59	62	2	4	30	1.28
30410502--30410533	16	1.9	17	93	6	57	53	0	0	46	1.00
30410752--30410785	17	1.9	18	88	5	52	70	2	0	26	1.01
30420201--30420243	19	2.2	20	88	8	63	37	0	23	39	1.55
30420660--30420699	19	2.1	19	85	4	53	37	12	17	32	1.87
30420901--30420967	26	2.6	26	95	0	116	10	26	20	41	1.85
30421294--30421370	38	2.0	38	100	0	154	37	10	18	33	1.85
30423435--30423623	95	2.0	95	98	0	369	39	20	15	24	1.92
30424579--30424740	51	3.0	58	88	8	227	46	11	14	27	1.78
30425837--30426368	263	2.0	264	97	0	1012	39	15	10	35	1.81
30429519--30429544	13	2.0	13	100	0	52	46	0	7	46	1.31
30432843--30432881	3	13.3	3	94	5	71	0	0	64	35	0.94
30432911--30432958	24	2.0	24	100	0	96	29	16	12	41	1.85
30435462--30435509	25	1.9	25	100	0	96	56	4	18	20	1.58
30436595--30436661	34	1.9	35	84	3	91	32	8	13	44	1.75
30437594--30437662	11	6.3	11	79	11	70	24	26	1	47	1.60
30443172--30443461	125	2.3	126	90	0	456	26	22	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30443494--30443774	96	2.9	95	82	3	348	40	17	3	38	1.67
30445904--30445940	18	2.0	18	89	5	56	24	13	0	62	1.31
30446338--30446400	28	2.1	31	81	18	73	25	12	7	53	1.65
30449926--30449950	12	2.1	12	100	0	50	16	44	16	24	1.86
30450069--30450213	65	2.2	65	88	0	218	24	23	26	25	2.00
30455118--30455188	24	3.0	24	83	4	81	14	29	23	32	1.94
30462036--30462279	46	5.6	44	88	10	349	33	14	22	29	1.93
30462135--30462262	38	3.2	38	82	16	175	33	14	21	30	1.93
30467446--30468106	86	7.6	87	88	1	945	28	22	24	25	1.99
30467446--30468106	173	3.8	174	89	1	954	28	22	24	25	1.99
30467438--30468106	259	2.6	258	89	1	1016	28	21	23	25	1.99
30469036--30469128	39	2.5	37	80	7	98	27	29	22	20	1.98
30469253--30469301	20	2.4	21	79	3	55	38	20	0	40	1.53
30469302--30469346	22	2.0	24	82	8	58	33	26	0	40	1.57
30469288--30469346	23	2.5	25	76	13	63	32	25	0	42	1.55
30469480--30469524	3	15.0	3	80	0	54	57	6	0	35	1.25
30469480--30469526	18	2.6	18	93	0	76	55	8	0	36	1.31
30469484--30469524	12	3.4	12	93	0	64	56	7	0	36	1.27
30470229--30470268	20	2.0	20	85	9	55	2	15	5	77	1.04
30470399--30470466	31	2.3	28	78	9	73	41	2	1	54	1.24
30470445--30470483	21	1.9	20	84	5	51	46	2	0	51	1.14
30475384--30475426	21	2.0	21	82	8	52	23	20	4	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30476471--30476563	39	2.5	37	80	7	98	27	29	22	20	1.98
30476918--30476962	3	15.0	3	80	0	54	57	6	0	35	1.25
30476918--30476964	18	2.6	18	93	0	76	55	8	0	36	1.31
30476922--30476962	12	3.4	12	93	0	64	56	7	0	36	1.27
30477667--30477706	20	2.0	20	85	9	55	2	15	5	77	1.04
30477837--30477904	31	2.3	28	78	9	73	41	2	1	54	1.24
30477883--30477921	21	1.9	20	84	5	51	46	2	0	51	1.14
30479603--30479711	54	2.0	53	87	5	157	28	25	24	21	1.99
30482494--30482682	95	2.0	95	93	0	324	37	4	21	36	1.73
30483141--30483199	12	5.1	12	75	19	54	49	1	1	47	1.21
30488487--30488726	50	4.7	50	83	5	268	25	20	29	23	1.99
30488481--30488727	100	2.4	103	82	7	295	25	21	29	23	1.99
30494028--30494133	41	2.6	41	92	0	167	22	20	24	32	1.98
30497928--30497983	20	2.8	19	84	13	69	69	1	1	26	1.08
30497931--30498022	19	4.6	19	72	12	69	66	2	3	28	1.19
30497938--30498022	29	2.8	30	76	18	88	65	1	3	29	1.16
30497931--30498022	10	9.3	10	68	14	57	66	2	3	28	1.19
30497946--30498023	30	2.7	27	75	16	77	65	1	2	30	1.14
30498160--30498189	15	1.9	16	93	6	53	46	0	0	53	1.00
30498156--30498191	17	2.1	17	89	5	54	50	0	0	50	1.00
30498443--30498485	12	3.6	11	84	12	50	55	0	44	0	0.99
30498649--30498694	23	2.0	22	91	4	74	23	2	10	63	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30498648--30498855	40	5.0	41	70	18	139	30	0	12	55	1.43
30498630--30498815	101	1.8	99	84	10	252	30	1	12	56	1.43
30498750--30498910	21	7.2	21	81	16	150	30	0	14	54	1.45
30498637--30498842	101	2.0	98	81	10	229	30	0	13	55	1.44
30498749--30498833	19	4.2	19	89	8	116	30	0	12	56	1.37
30499120--30499161	16	2.7	15	85	7	57	38	2	2	57	1.25
30505046--30505127	36	2.3	36	79	8	87	46	1	19	32	1.58
30509617--30509650	18	1.9	17	88	5	50	29	0	5	64	1.17
30512690--30512730	21	2.0	21	90	0	64	29	21	29	19	1.98
30520297--30520346	26	1.9	26	100	0	100	38	28	8	26	1.84
30522101--30522131	14	2.2	14	100	0	62	51	19	0	29	1.47
30525848--30525873	6	4.3	6	100	0	52	84	0	0	15	0.62
30530176--30530211	12	3.0	12	84	15	56	36	0	25	38	1.56
30532208--30532247	17	2.3	17	86	4	62	37	5	0	57	1.21
30535330--30535539	43	4.9	43	83	4	244	32	26	18	23	1.97
30536393--30536700	114	2.7	114	90	0	472	27	21	25	25	1.99
30537049--30537104	24	2.4	24	84	3	69	19	5	42	32	1.74
30537270--30537310	14	2.9	14	88	3	55	29	0	34	36	1.58
30537302--30537342	21	2.0	20	85	4	55	19	0	41	39	1.52
30537310--30537397	29	3.0	30	70	18	87	25	0	39	35	1.56
30537312--30537400	15	6.1	15	73	18	64	25	0	37	37	1.57
30537950--30538237	107	2.7	106	90	5	444	52	10	10	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30538023--30538498	250	1.9	249	87	4	690	48	10	12	28	1.74
30551557--30551584	10	2.8	10	100	0	56	17	0	10	71	1.14
30554392--30554431	15	2.5	17	84	12	57	65	0	0	35	0.93
30557850--30558170	174	1.8	175	82	3	414	42	23	8	26	1.83
30563538--30563664	61	2.1	61	85	2	166	41	14	5	38	1.69
30563835--30563864	7	4.3	7	100	0	60	66	0	33	0	0.92
30564792--30564889	11	8.5	11	71	8	52	63	6	5	25	1.39
30568698--30568834	64	2.1	65	97	1	258	39	10	10	40	1.73
30570611--30570657	24	2.0	24	83	8	60	53	6	6	34	1.52
30573179--30573245	13	4.9	13	76	8	62	2	19	1	76	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199