genome.fa.s18.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  198  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62697075--62698312	99	12.5	99	87	1	1618	32	22	20	24	1.98
62699475--62699499	5	5.0	5	100	0	50	20	0	0	80	0.72
62700726--62701047	110	3.0	108	87	5	429	30	17	17	34	1.93
62710839--62710883	15	3.1	15	81	15	58	48	4	2	44	1.35
62716017--62716078	29	2.1	29	85	11	81	54	9	9	25	1.63
62721810--62721849	21	1.9	21	89	0	62	40	7	20	32	1.80
62725882--62725954	31	2.4	30	86	2	101	49	0	5	45	1.25
62726013--62726084	31	2.3	31	85	0	90	48	2	16	31	1.61
62726876--62726901	10	2.6	10	100	0	52	46	0	19	34	1.50
62728227--62728269	20	2.3	19	88	8	61	32	2	0	65	1.06
62729139--62729183	6	7.8	6	80	14	51	28	0	2	68	1.01
62729139--62729185	23	2.1	22	84	11	60	27	0	2	70	0.99
62729139--62729183	11	3.9	12	78	18	51	28	0	2	68	1.01
62731978--62732321	182	1.9	184	84	2	469	46	9	13	30	1.74
62734831--62734921	44	2.1	42	83	4	110	34	17	24	24	1.96
62735768--62735827	30	2.0	31	86	3	86	38	0	41	20	1.52
62736311--62736464	38	4.1	38	87	0	191	36	18	9	35	1.84
62757035--62757070	17	2.2	16	90	5	54	58	13	0	27	1.36
62757015--62757064	26	2.0	25	84	11	66	52	14	2	32	1.53
62760762--62760805	14	2.9	14	81	18	52	63	0	0	36	0.95
62763542--62763581	17	2.5	16	84	8	55	55	20	0	25	1.44
62763770--62763884	51	2.2	52	83	6	137	31	14	10	43	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62768273--62768315	15	2.6	17	82	17	56	37	4	2	55	1.33
62775440--62775596	78	2.0	78	97	0	296	36	11	10	42	1.75
62785592--62785639	24	2.0	24	100	0	96	41	8	12	37	1.73
62792499--62792647	78	1.9	79	79	6	169	34	7	24	33	1.83
62793392--62793436	16	2.9	16	83	6	58	35	2	0	62	1.08
62793369--62793459	40	2.2	44	88	11	147	37	2	0	60	1.09
62805239--62805309	25	2.9	25	80	2	81	29	15	23	30	1.95
62805318--62805366	25	2.0	25	87	0	71	36	14	16	32	1.89
62807144--62807264	58	2.1	58	87	3	172	42	4	3	50	1.38
62807696--62807836	23	6.1	23	81	0	147	34	17	20	28	1.95
62807697--62807833	46	3.0	46	83	0	166	35	17	18	29	1.94
62808269--62808346	35	2.2	35	79	4	86	29	29	23	17	1.97
62808440--62808529	27	3.3	27	82	0	108	41	16	25	16	1.89
62810859--62810898	20	2.0	20	95	0	71	55	22	0	22	1.44
62812220--62812252	16	2.0	17	88	5	50	6	0	84	9	0.76
62820837--62820886	2	25.0	2	100	0	100	50	0	0	50	1.00
62821153--62821205	20	2.8	19	80	5	63	50	9	0	39	1.35
62849203--62849236	10	3.4	10	100	0	68	64	0	17	17	1.29
62850338--62850400	32	2.0	32	90	6	101	28	19	39	12	1.88
62853093--62853206	58	2.0	58	100	0	228	44	10	3	41	1.56
62859857--62859919	32	2.0	32	90	6	101	28	19	39	12	1.88
62862612--62862725	58	2.0	58	100	0	228	44	10	3	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62869020--62869328	153	2.0	155	90	3	487	42	14	10	32	1.80
62870326--62870367	18	2.2	20	83	8	52	66	7	0	26	1.17
62872670--62872698	14	2.1	14	100	0	58	62	6	0	31	1.22
62875252--62875316	9	7.1	9	72	20	55	53	3	1	41	1.25
62875253--62875322	37	1.9	36	88	8	106	57	2	1	38	1.23
62878076--62878137	30	2.1	29	84	3	79	37	12	11	38	1.80
62878205--62878340	72	1.9	71	86	4	193	30	4	8	56	1.48
62878277--62878325	20	2.4	21	83	13	66	34	4	0	61	1.15
62881263--62881296	15	2.3	15	94	0	59	32	20	0	47	1.51
62923450--62923548	50	2.0	50	90	7	157	34	15	12	38	1.84
62930347--62930404	30	2.0	28	83	12	73	41	18	3	36	1.68
62935984--62936011	9	3.1	9	100	0	56	32	10	10	46	1.73
62940164--62940211	23	2.1	23	84	7	62	8	12	2	77	1.08
62940759--62940816	27	2.1	27	80	0	62	36	10	1	51	1.46
62942578--62942608	16	1.9	16	93	0	53	25	19	22	32	1.97
62944962--62945003	19	2.2	19	83	8	50	16	19	4	59	1.54
62947246--62947491	92	2.7	90	90	3	370	30	18	23	26	1.98
62947478--62948523	89	11.7	89	89	2	1529	30	19	23	26	1.98
62947478--62948532	270	3.9	267	89	2	1574	30	19	23	26	1.98
62947478--62948523	181	5.8	181	92	1	1574	30	19	23	26	1.98
62949841--62949906	3	21.3	3	73	17	55	33	0	1	65	1.02
62949864--62949906	10	4.5	10	80	11	54	30	0	2	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62949841--62949896	14	3.9	15	72	13	55	33	0	0	66	0.92
62949842--62949903	18	3.0	20	77	15	65	33	0	1	64	1.03
62963703--62963736	17	2.0	17	94	0	59	44	50	0	5	1.26
62968342--62968375	17	2.0	17	94	0	59	44	50	0	5	1.26
62970924--62970962	19	2.1	18	85	4	51	46	2	2	48	1.29
62971069--62971103	17	2.0	18	94	5	63	57	0	5	37	1.23
62972522--62972571	17	2.7	20	78	18	70	10	0	44	46	1.37
62977161--62977210	17	2.7	20	78	18	70	10	0	44	46	1.37
62980119--62980328	109	1.9	110	84	0	278	38	17	12	31	1.87
62985654--62985687	16	2.2	16	89	5	52	35	5	11	47	1.65
62986578--62986617	6	6.8	6	85	5	55	85	5	0	10	0.75
62986585--62986617	17	1.9	17	93	0	57	84	6	0	9	0.76
62986888--62986924	20	2.0	20	89	10	60	5	13	21	59	1.54
62987479--62987904	132	3.2	132	91	0	699	28	24	17	28	1.98
62987571--62987907	44	7.7	43	67	17	183	29	24	16	29	1.97
62987918--62988041	62	2.0	62	84	3	160	23	20	22	33	1.98
62988023--62989078	89	11.9	89	87	2	1264	22	22	25	29	1.99
62991257--62991322	25	2.5	24	83	11	69	50	7	13	28	1.69
62992721--62992760	19	2.1	19	100	0	80	60	10	10	20	1.57
63002769--63003038	41	6.6	41	89	5	329	27	19	24	28	1.98
63008654--63008703	17	2.7	20	78	18	70	10	0	44	46	1.37
63013293--63013342	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63014731--63014809	30	2.7	30	84	2	97	8	22	27	40	1.84
63021981--63022029	14	3.5	14	80	0	62	48	0	12	38	1.41
63022139--63022198	21	3.0	20	80	7	59	33	6	5	55	1.48
63023082--63023164	36	2.3	36	81	4	96	34	25	9	30	1.88
63030928--63030965	18	2.1	19	90	5	60	52	5	21	21	1.66
63033445--63033737	72	4.1	72	89	1	437	26	20	20	31	1.98
63035573--63035703	56	2.3	57	94	1	228	39	20	9	29	1.85
63044854--63045074	72	3.1	72	91	1	327	27	20	21	30	1.98
63047252--63047418	81	2.1	81	98	0	325	40	22	8	28	1.84
63047519--63047564	23	2.0	23	100	0	92	13	39	4	43	1.63
63048996--63049115	50	2.4	50	88	6	190	38	20	10	31	1.85
63052147--63052266	23	5.3	23	67	10	68	30	4	24	40	1.74
63052533--63052580	21	2.3	20	83	13	62	33	0	8	58	1.28
63052545--63052644	37	2.7	37	77	13	98	42	1	6	51	1.33
63055455--63055548	23	4.1	23	85	0	134	47	4	25	22	1.69
63059959--63060052	23	4.1	23	85	0	134	47	4	25	22	1.69
63063349--63063454	49	2.1	50	89	1	160	42	19	11	26	1.85
63086786--63086850	28	2.3	28	84	5	78	38	6	0	55	1.25
63090445--63090948	72	7.0	72	94	0	839	27	21	20	30	1.98
63090900--63090994	46	2.1	46	97	0	181	29	24	22	24	1.99
63090828--63091066	118	2.0	118	91	3	392	29	22	19	28	1.98
63090951--63091142	72	2.7	72	90	0	294	29	19	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63090756--63091138	190	2.0	190	90	2	599	28	22	20	28	1.98
63092690--63092745	29	1.9	29	92	0	94	33	19	5	41	1.74
63094002--63094030	3	9.7	3	100	0	58	34	0	0	65	0.93
63098253--63098286	16	2.1	16	88	0	50	50	14	17	17	1.79
63103561--63103590	13	2.3	13	94	0	51	63	10	0	26	1.26
63111489--63111517	3	9.7	3	100	0	58	31	0	0	68	0.89
63113005--63113051	21	2.2	22	92	3	78	21	38	19	21	1.94
63123845--63123884	20	2.0	20	90	0	62	12	5	5	77	1.09
63134891--63135182	72	4.1	72	91	3	498	27	18	23	30	1.98
63136734--63136775	19	2.2	19	95	0	75	4	28	19	47	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199