genome.fa.s18.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  186  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59259974--59260020	12	4.1	11	86	2	58	0	34	0	65	0.93
59259965--59260013	23	2.1	23	85	7	64	0	40	0	59	0.98
59259992--59260065	27	2.8	27	74	11	64	0	31	2	66	1.06
59259966--59260040	18	4.0	20	72	20	63	0	36	0	64	0.94
59260698--59261722	76	13.3	75	86	4	1232	33	20	17	28	1.95
59260698--59262441	232	7.4	230	79	10	1632	33	21	16	28	1.95
59261614--59261843	122	1.9	121	91	2	381	35	17	15	32	1.91
59261737--59262447	77	9.2	77	86	5	908	34	22	16	27	1.95
59261538--59261919	199	1.9	201	91	1	633	34	18	16	30	1.93
59266098--59266151	25	2.2	25	82	0	63	24	12	12	50	1.76
59271420--59271470	20	2.5	20	77	0	57	35	1	13	49	1.54
59271451--59271499	15	3.3	15	82	8	64	38	2	16	42	1.60
59271879--59271918	14	2.9	14	84	0	53	32	7	17	42	1.77
59271902--59271941	20	2.0	20	90	0	62	27	10	12	50	1.72
59271887--59271953	34	1.9	35	87	3	100	32	8	11	46	1.72
59276970--59277007	20	1.9	20	100	0	76	50	21	7	21	1.74
59280518--59280611	27	3.5	27	88	0	134	38	18	18	25	1.93
59280649--59280695	24	1.9	25	82	4	60	17	8	25	48	1.74
59280892--59281079	32	5.9	32	83	0	214	22	17	19	40	1.91
59280892--59281079	96	2.0	96	83	0	241	22	17	19	40	1.91
59284848--59284903	25	2.3	25	87	6	80	67	3	0	28	1.07
59286384--59286671	128	2.2	130	77	10	295	28	23	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59286601--59286763	44	3.7	44	79	15	142	26	25	21	26	1.99
59286480--59287070	217	2.7	217	90	0	905	29	23	19	27	1.98
59291547--59291593	23	2.0	23	91	0	76	42	4	10	42	1.59
59292841--59292941	45	2.2	45	87	0	139	17	17	21	42	1.89
59294028--59294070	17	2.5	17	92	0	68	44	13	6	34	1.72
59302384--59302426	20	2.2	20	100	0	86	30	18	9	41	1.82
59302983--59303047	14	4.5	14	70	19	53	61	4	1	32	1.26
59303061--59303116	25	2.3	25	87	6	80	67	3	0	28	1.07
59308953--59309002	21	2.5	19	78	9	55	60	2	2	36	1.20
59309203--59309237	18	1.9	18	88	0	52	65	0	0	34	0.93
59309175--59309255	22	4.2	19	72	20	60	59	0	4	35	1.19
59309096--59309252	51	3.1	51	70	9	131	54	2	7	35	1.41
59309480--59309534	3	18.3	3	85	7	76	63	3	1	30	1.22
59320781--59320848	27	2.6	27	81	9	70	25	23	0	51	1.48
59320801--59320849	18	2.6	18	87	6	62	22	24	0	53	1.47
59325942--59326078	27	5.1	27	76	0	85	32	24	6	36	1.81
59325962--59326065	54	1.9	54	86	3	147	32	22	6	38	1.80
59326027--59326085	27	2.2	27	84	0	73	32	27	3	37	1.73
59328841--59328871	11	2.8	11	90	0	53	19	0	6	74	1.03
59335841--59335883	22	2.0	22	95	0	77	51	9	16	23	1.73
59338463--59338489	13	2.1	13	100	0	54	22	22	14	40	1.90
59339431--59339472	21	2.0	21	90	0	66	40	2	7	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59339564--59339622	29	2.1	29	87	9	86	62	1	10	25	1.36
59342407--59342533	25	5.2	24	69	20	84	37	22	24	15	1.93
59353535--59353585	25	2.0	26	96	3	95	43	7	3	45	1.51
59357198--59357243	22	2.1	22	83	0	56	73	6	8	10	1.23
59362091--59362272	72	2.5	74	79	7	185	19	25	21	34	1.96
59362225--59362277	24	2.2	23	83	9	70	15	20	22	41	1.89
59367524--59367548	13	1.9	13	100	0	50	64	4	8	24	1.38
59373475--59373542	27	2.5	28	80	17	90	41	8	1	48	1.43
59373597--59373675	27	2.9	27	88	3	115	29	22	30	17	1.97
59373749--59373818	19	3.7	19	78	3	88	38	8	0	52	1.32
59373754--59373824	37	1.9	37	97	0	133	40	9	0	49	1.36
59374040--59374078	19	2.1	19	85	4	53	35	7	0	56	1.28
59374045--59374087	18	2.3	19	84	4	52	39	11	0	48	1.40
59374100--59374163	18	3.5	18	82	4	92	46	0	12	40	1.42
59374084--59374179	37	2.6	37	100	0	192	48	0	12	38	1.41
59374084--59374179	19	5.2	19	79	5	124	48	0	12	38	1.41
59374362--59374402	19	2.1	19	86	4	55	53	0	9	36	1.34
59374469--59374539	27	2.6	27	88	0	97	16	29	23	29	1.97
59374470--59374556	27	3.2	27	83	3	77	19	27	25	27	1.99
59374596--59374627	13	2.6	12	90	9	55	0	0	9	90	0.45
59374644--59374693	27	2.0	25	88	11	75	52	0	12	36	1.39
59375284--59375323	19	2.0	20	90	4	64	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59376355--59376396	18	2.3	19	84	12	52	28	0	4	66	1.12
59376339--59376437	19	5.3	18	70	17	60	35	0	5	59	1.19
59377751--59377789	15	2.7	15	92	4	62	61	30	7	0	1.24
59378458--59378566	37	2.9	37	83	2	130	43	11	10	35	1.74
59378658--59379016	18	20.1	18	69	15	201	44	9	13	32	1.76
59378653--59378724	31	2.3	31	100	0	144	50	5	9	34	1.59
59378741--59378799	17	3.4	17	72	9	64	49	11	11	27	1.74
59378932--59379025	17	5.4	17	85	2	116	41	10	14	32	1.81
59379180--59379247	19	3.7	18	73	15	59	42	2	14	39	1.61
59379163--59379207	20	2.2	20	84	11	56	42	6	13	37	1.70
59379544--59379586	16	2.6	16	92	3	68	0	16	2	81	0.79
59379544--59379586	8	5.2	8	83	5	59	0	16	2	81	0.79
59379576--59379609	13	2.6	13	95	0	59	0	23	0	76	0.79
59379870--59379949	6	12.8	6	80	11	74	0	23	0	76	0.79
59379872--59379952	7	11.3	7	77	15	53	0	25	0	74	0.83
59379870--59379949	13	6.4	12	76	16	74	0	23	0	76	0.79
59379862--59379952	33	2.7	35	82	11	113	0	24	0	75	0.80
59379864--59379950	42	2.0	44	86	10	126	0	24	0	75	0.80
59379864--59379948	22	4.0	21	83	14	111	0	23	0	76	0.79
59379866--59379944	19	4.3	19	72	18	69	0	24	0	75	0.80
59380450--59380580	59	2.2	60	80	8	151	38	2	22	36	1.67
59380419--59380587	30	5.7	30	80	6	166	38	4	22	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59380630--59380680	25	2.0	25	100	0	102	31	15	15	37	1.89
59383391--59383420	10	3.0	10	100	0	60	70	20	10	0	1.16
59386303--59386494	49	3.9	49	75	8	167	34	16	21	27	1.95
59386302--59386876	98	5.9	98	73	9	376	34	16	22	26	1.95
59386662--59386796	48	2.8	47	72	8	119	37	15	21	25	1.93
59386357--59386955	290	2.1	290	90	2	952	34	17	22	26	1.96
59388459--59388500	3	14.0	3	100	0	84	66	0	0	33	0.92
59394504--59394557	22	2.4	23	75	3	56	51	7	9	31	1.61
59394994--59395040	3	15.7	3	95	0	67	59	0	6	34	1.23
59396089--59396118	15	1.9	16	93	6	53	6	0	46	46	1.29
59396449--59396770	43	7.4	43	74	11	228	27	21	19	31	1.97
59396487--59396995	174	2.9	174	88	2	700	27	21	20	30	1.98
59409165--59409218	22	2.4	23	75	3	56	51	7	9	31	1.61
59409655--59409710	3	18.7	3	96	0	85	60	0	5	33	1.19
59410759--59410788	15	1.9	16	93	6	53	6	0	46	46	1.29
59412810--59412834	13	1.9	13	100	0	50	16	12	48	24	1.79
59414328--59414474	27	5.4	28	75	8	99	20	25	18	36	1.95
59417759--59417792	18	1.9	18	88	5	52	32	8	11	47	1.71
59427509--59427583	5	15.4	5	82	10	70	21	2	2	73	1.08
59427526--59427627	4	23.8	4	78	9	71	20	3	3	71	1.18
59427535--59427627	28	3.4	27	77	11	84	20	4	4	70	1.21
59427770--59428080	106	2.9	106	87	2	408	31	16	18	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59429461--59429504	19	2.3	20	84	7	56	27	20	11	40	1.86
59431144--59431962	274	3.0	274	94	0	1406	29	19	20	30	1.97
59432075--59432108	8	4.4	8	96	3	61	88	11	0	0	0.52
59432124--59432171	12	4.0	12	84	10	55	83	0	10	6	0.81
59432124--59432171	13	3.8	12	83	8	60	83	0	10	6	0.81
59432998--59433033	15	2.5	14	90	4	54	72	0	13	13	1.13
59434357--59434623	50	5.3	50	66	8	184	37	25	16	20	1.93
59434295--59434628	100	3.3	99	95	1	596	37	24	16	21	1.94
59434631--59434680	25	2.0	25	84	0	64	38	20	18	24	1.93
59434623--59435888	125	10.2	125	96	0	2317	34	19	19	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199