genome.fa.s18.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  8  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3048173--3048230	30	1.9	30	89	0	89	31	24	3	41	1.71
3068551--3068584	14	2.4	14	100	0	68	50	11	5	32	1.63
3089620--3089685	31	2.1	31	85	0	87	46	4	10	37	1.59
3093442--3093494	26	2.0	26	85	0	70	30	3	9	56	1.49
3096179--3096206	5	5.6	5	100	0	56	57	0	0	42	0.99
3105668--3105708	16	2.4	18	80	15	52	58	12	0	29	1.34
3111080--3111119	18	2.3	18	86	4	55	45	0	2	52	1.14
3111079--3111142	22	3.3	19	73	16	51	45	0	3	51	1.17
3111095--3111145	23	2.2	22	80	13	59	49	0	3	47	1.20
3122671--3122703	14	2.4	14	89	0	57	6	18	0	75	1.00
3125008--3125053	23	2.0	23	83	8	58	52	4	4	39	1.41
3127812--3127849	18	2.1	18	100	0	76	10	10	31	47	1.72
3146954--3147099	60	2.3	60	86	6	193	17	13	43	26	1.85
3147114--3147154	21	2.0	21	90	0	64	17	4	56	21	1.60
3156735--3156779	21	2.1	21	87	0	63	24	0	6	68	1.13
3157166--3157229	25	2.4	25	82	7	74	54	1	1	42	1.19
3157180--3157228	25	1.9	26	91	4	82	51	2	2	44	1.24
3188958--3188986	9	3.2	9	100	0	58	51	0	0	48	1.00
3192086--3192162	12	6.6	12	72	26	51	37	1	2	58	1.20
3192086--3192160	19	3.9	18	70	17	62	37	1	2	58	1.20
3193626--3194052	215	2.0	210	94	2	737	30	15	17	37	1.90
3197405--3197434	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3204181--3204211	2	15.5	2	93	0	53	54	0	45	0	0.99
3206466--3206495	14	2.1	14	100	0	60	40	6	0	53	1.27
3210268--3210338	29	2.3	30	79	15	74	64	8	5	21	1.41
3231966--3232031	30	2.2	31	78	13	75	63	0	4	31	1.14
3231981--3232031	10	5.1	10	74	9	50	64	0	3	31	1.11
3232243--3232306	28	2.2	29	86	8	87	32	1	1	64	1.13
3236564--3236623	30	2.0	31	86	3	86	45	1	6	46	1.39
3236717--3236743	6	4.5	6	100	0	54	62	0	0	37	0.95
3241616--3241650	18	1.9	18	88	0	52	62	5	0	31	1.18
3267733--3267801	33	2.1	34	94	2	122	34	14	13	37	1.85
3267733--3267789	19	3.2	19	65	25	52	36	14	12	36	1.83
3269290--3269346	28	2.0	28	100	0	114	35	21	17	26	1.95
3288125--3288253	67	1.9	67	91	0	213	29	32	16	21	1.95
3292242--3292274	17	1.9	17	93	0	57	51	18	9	21	1.73
3294390--3294498	55	2.0	55	96	0	200	50	19	12	17	1.78
3296167--3296214	14	3.4	14	80	11	62	39	45	0	14	1.45
3296167--3296233	21	3.2	21	80	0	62	37	44	1	16	1.57
3296405--3296461	16	3.6	16	95	0	87	29	0	36	33	1.58
3296707--3296741	18	2.0	17	88	5	52	54	0	0	45	0.99
3296841--3296882	15	2.7	16	82	14	52	52	2	0	45	1.13
3296594--3296891	154	1.9	156	95	2	546	44	3	5	47	1.41
3296850--3296984	15	8.9	15	67	24	70	51	3	2	42	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3296633--3296948	154	2.0	155	83	7	401	46	4	3	45	1.39
3296910--3297000	44	2.1	43	81	6	103	53	3	2	40	1.29
3296890--3297108	120	1.8	119	88	6	336	50	6	3	39	1.46
3297074--3297107	17	2.0	17	94	0	59	50	0	5	44	1.26
3297140--3297334	93	2.1	92	88	4	286	47	4	4	44	1.41
3298896--3298963	34	2.0	34	100	0	136	29	23	17	29	1.97
3299107--3299263	78	2.0	78	86	0	215	26	17	24	31	1.97
3301136--3301173	14	2.7	14	91	0	67	44	28	0	26	1.54
3301629--3301738	40	2.8	40	84	2	134	18	26	20	34	1.96
3324004--3324036	13	2.3	15	90	10	52	60	0	0	39	0.97
3324502--3324573	33	2.2	34	80	9	87	50	16	5	27	1.68
3345387--3345425	17	2.3	17	86	8	53	30	0	17	51	1.46
3345609--3345691	21	4.0	21	83	0	103	15	24	15	44	1.85
3347535--3347665	61	2.1	61	81	2	156	35	7	16	40	1.77
3347772--3347873	41	2.5	41	91	0	159	28	17	22	31	1.97
3347772--3347916	41	3.5	41	79	5	143	27	19	23	29	1.98
3351205--3351291	45	1.9	45	88	0	129	36	24	12	26	1.91
3351293--3351436	50	2.9	50	85	3	191	29	28	18	22	1.98
3351293--3351428	51	2.7	51	87	3	186	30	27	18	23	1.98
3354598--3354652	22	2.4	23	87	3	76	27	7	21	43	1.79
3358257--3358296	20	2.0	20	100	0	80	20	25	5	50	1.68
3373694--3373743	25	2.0	25	84	7	66	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3376384--3376440	29	2.0	28	86	10	80	26	3	1	68	1.15
3378776--3378802	5	5.4	5	100	0	54	22	0	22	55	1.44
3388508--3388736	76	3.0	76	100	0	458	47	10	22	19	1.79
3401085--3401138	2	27.0	2	96	0	99	51	0	48	0	1.00
3414615--3414646	15	2.1	15	100	0	64	31	56	0	12	1.37
3418276--3418423	73	2.0	74	92	2	244	25	18	16	39	1.91
3421989--3422037	23	2.1	24	81	11	57	46	2	40	10	1.49
3426187--3426211	11	2.3	11	100	0	50	0	8	0	92	0.40
3426576--3426624	22	2.3	22	89	3	73	36	2	0	61	1.08
3426591--3426643	25	2.0	26	82	7	63	39	0	0	60	0.97
3429483--3429579	40	2.4	41	79	5	117	38	21	22	17	1.93
3429483--3429579	39	2.4	40	75	5	106	38	21	22	17	1.93
3429619--3429768	41	3.7	41	82	3	194	22	20	25	32	1.97
3430057--3430084	14	2.0	14	100	0	56	21	0	35	42	1.53
3430158--3430203	14	3.3	14	84	0	56	23	0	43	32	1.54
3430158--3430203	21	2.2	21	84	7	58	23	0	43	32	1.54
3430653--3430740	39	2.3	39	84	4	106	38	19	20	21	1.93
3430779--3430854	40	1.9	40	91	0	125	25	18	22	34	1.96
3431584--3431661	38	2.1	38	90	0	120	20	14	8	56	1.65
3437768--3438008	43	5.6	43	90	1	360	24	19	27	28	1.99
3439258--3439313	22	2.5	23	82	2	69	51	1	1	44	1.22
3439289--3439328	16	2.5	16	91	0	62	47	2	7	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3439339--3439508	59	2.9	59	98	0	322	40	5	9	44	1.59
3439575--3439618	22	1.9	24	86	9	65	59	2	2	36	1.23
3445749--3445799	24	2.2	24	77	22	56	33	0	5	60	1.21
3454148--3454180	17	1.9	17	100	0	66	18	18	6	57	1.60
3461412--3461456	23	2.0	23	86	0	63	35	2	15	46	1.58
3461788--3461836	16	3.1	16	78	0	62	30	2	2	65	1.15
3481521--3481566	21	2.2	21	84	7	58	50	0	0	50	1.00
3483485--3483523	18	2.2	18	86	9	53	43	17	0	38	1.50
3488892--3488929	20	1.9	20	84	10	51	26	15	0	57	1.38
3493175--3493891	357	2.0	357	100	0	1434	30	18	17	33	1.94
3498502--3498547	20	2.3	20	85	7	58	28	4	19	47	1.68
3500177--3500210	14	2.5	14	90	4	52	52	17	2	26	1.58
3500448--3500489	21	2.0	21	85	0	57	2	23	45	28	1.66
3505916--3505944	2	14.5	2	100	0	58	51	48	0	0	1.00
3508969--3509014	24	2.0	24	82	4	58	45	2	4	47	1.34
3522704--3522978	125	2.2	124	87	1	399	33	21	15	29	1.94
3524206--3524398	10	20.0	9	67	18	61	61	1	4	32	1.26
3524220--3524258	18	2.1	19	85	4	53	64	2	2	30	1.21
3524239--3524318	30	2.7	30	83	9	94	58	0	1	40	1.06
3525154--3525178	3	8.3	3	100	0	50	32	0	0	68	0.90
3525217--3525261	23	2.0	23	86	8	65	8	11	2	77	1.07
3534474--3534502	14	2.0	15	93	6	51	41	10	0	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3544064--3544114	26	2.0	26	100	0	102	43	15	9	31	1.80
3553206--3553235	15	1.9	16	93	6	53	33	0	0	66	0.92
3553978--3554090	56	2.0	56	100	0	226	28	15	10	45	1.80
3560707--3560775	33	2.1	34	97	2	131	27	21	2	47	1.65
3572337--3572401	24	2.8	24	88	2	96	24	10	21	43	1.84
3573595--3573626	4	7.8	4	96	3	55	21	3	0	75	0.95
3574056--3574129	33	2.2	33	82	0	85	24	20	17	37	1.93
3575677--3575702	13	2.0	13	100	0	52	46	0	30	23	1.53
3576725--3576813	44	2.0	47	84	10	123	31	5	5	57	1.45
3578819--3578848	15	2.0	15	100	0	60	53	6	33	6	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199