genome.fa.s18.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  153  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50691364--50691406	22	2.0	21	86	4	59	46	6	20	25	1.76
50692246--50692287	11	3.9	11	90	6	68	69	7	0	23	1.13
50692242--50692286	21	2.1	21	95	4	81	66	8	0	24	1.20
50692326--50692374	15	3.3	15	97	0	89	61	6	12	20	1.52
50696832--50696925	36	2.6	37	81	5	120	26	26	21	25	1.99
50698295--50698516	40	5.6	40	78	11	156	25	21	27	25	1.99
50706983--50707207	40	5.7	40	82	6	224	25	28	20	25	1.99
50707139--50707216	40	1.9	41	82	10	97	26	28	20	24	1.99
50708376--50708564	40	4.7	40	81	7	172	23	23	28	24	2.00
50708494--50708650	40	3.9	40	86	0	197	22	21	29	25	1.99
50712002--50712069	31	2.2	31	100	0	136	29	11	32	26	1.92
50711953--50712120	82	2.1	81	97	2	320	31	9	29	29	1.89
50711910--50712293	129	3.0	129	97	2	715	31	9	29	29	1.88
50712033--50712167	47	2.8	48	95	4	236	31	8	29	29	1.88
50712131--50712198	31	2.2	31	100	0	136	29	11	32	26	1.92
50712084--50712249	78	2.1	79	95	4	298	31	9	30	28	1.89
50712162--50712407	91	2.6	93	89	5	361	32	8	30	28	1.88
50712162--50712407	47	5.2	47	89	4	363	32	8	30	28	1.88
50712526--50712604	37	2.1	37	88	0	113	24	17	31	26	1.97
50722734--50722798	20	3.3	19	73	16	51	38	16	21	23	1.93
50724573--50724635	33	1.9	33	84	12	85	14	25	4	55	1.58
50724650--50724693	18	2.4	18	84	0	61	13	18	0	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50724653--50724719	30	2.4	27	87	7	89	11	17	0	70	1.17
50724653--50724752	12	8.6	12	68	18	59	12	20	1	67	1.28
50724676--50724762	24	3.5	24	71	12	68	10	24	1	64	1.32
50726171--50726227	30	1.9	30	82	7	71	42	15	10	31	1.81
50726928--50726987	27	2.2	28	85	5	79	11	11	8	68	1.40
50735702--50735754	23	2.4	22	76	20	56	9	18	1	69	1.25
50743315--50743383	29	2.4	29	92	4	113	31	10	11	46	1.74
50744493--50744550	10	5.7	10	76	11	64	29	27	13	29	1.94
50744493--50744553	20	3.0	20	83	9	79	27	26	13	32	1.93
50745891--50745927	12	3.1	12	92	0	56	75	5	5	13	1.15
50746861--50746894	18	1.9	18	88	5	52	55	0	20	23	1.43
50746836--50746907	29	2.6	28	77	12	76	65	0	19	15	1.28
50748965--50749022	10	5.7	10	76	11	64	29	27	13	29	1.94
50748965--50749025	20	3.0	20	83	9	79	27	26	13	32	1.93
50754911--50754941	16	1.9	16	93	0	53	35	12	32	19	1.90
50754992--50755022	16	1.9	16	93	0	53	35	12	32	19	1.90
50754862--50755022	81	2.0	80	98	1	313	28	13	21	36	1.91
50756233--50756272	11	3.6	11	96	0	71	80	7	0	12	0.91
50763441--50763625	79	2.3	82	84	7	238	25	27	22	24	2.00
50763441--50763625	40	4.7	40	83	7	234	25	27	22	24	2.00
50774207--50774244	13	2.9	13	81	14	51	73	0	7	18	1.06
50775013--50775046	15	2.3	15	89	0	50	35	29	32	2	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50776477--50776519	20	2.2	20	86	0	59	53	2	30	13	1.53
50782734--50782769	13	2.8	13	91	0	54	77	2	5	13	1.05
50795846--50795879	11	3.1	11	91	0	50	17	5	11	64	1.45
50801982--50802205	40	5.7	40	81	9	239	24	22	26	26	2.00
50801982--50802205	78	2.8	79	82	9	258	24	22	26	26	2.00
50801982--50802205	118	1.9	119	82	9	287	24	22	26	26	2.00
50806852--50806944	37	2.5	37	96	0	168	26	19	17	36	1.94
50806950--50806983	7	4.7	7	88	3	50	26	26	2	44	1.69
50806957--50807175	46	4.7	46	87	7	305	30	22	13	34	1.92
50806957--50807175	98	2.3	92	89	5	314	30	22	13	34	1.92
50806907--50807175	144	1.9	144	92	0	448	29	22	13	34	1.92
50813014--50813237	40	5.7	40	82	7	230	25	22	26	26	2.00
50813014--50813237	79	2.8	79	82	8	258	25	22	26	26	2.00
50813014--50813237	119	1.9	119	82	7	285	25	22	26	26	2.00
50813087--50813260	79	2.2	79	82	8	203	27	21	25	26	1.99
50815367--50815419	23	2.4	22	76	20	56	9	18	1	69	1.25
50827652--50827690	19	2.1	19	90	0	60	48	12	10	28	1.74
50827671--50827744	35	2.1	35	94	0	130	40	14	10	33	1.81
50827780--50827818	20	1.9	20	84	5	51	28	12	30	28	1.93
50828255--50828302	25	1.9	25	86	0	69	18	27	20	33	1.96
50831614--50831813	37	5.4	37	75	5	170	30	16	15	37	1.90
50831610--50831848	37	6.5	37	74	6	144	29	16	15	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50831614--50831848	111	2.1	112	87	0	337	29	16	15	38	1.90
50834071--50834100	6	5.0	6	100	0	60	50	0	33	16	1.46
50834249--50834305	26	2.2	26	87	0	78	45	12	14	28	1.80
50841440--50841492	23	2.4	22	76	20	56	9	18	1	69	1.25
50846127--50846209	42	2.0	42	90	0	130	34	6	6	53	1.50
50847149--50847173	12	2.1	12	100	0	50	84	0	16	0	0.63
50848967--50849012	16	2.6	18	76	16	51	28	6	8	56	1.54
50850520--50850582	33	1.9	33	83	6	83	20	4	47	26	1.70
50850755--50850830	30	2.5	30	89	0	107	10	9	40	39	1.72
50860525--50860600	33	2.3	33	90	4	118	25	22	17	35	1.95
50862042--50862085	14	3.1	14	76	0	52	27	13	25	34	1.93
50862030--50862125	28	3.5	28	84	1	113	32	18	16	32	1.94
50873061--50873091	15	2.0	16	93	6	55	45	3	0	51	1.17
50883408--50883462	3	18.3	3	77	7	58	32	1	1	63	1.15
50883419--50883459	17	2.5	17	84	4	57	34	2	0	63	1.08
50888207--50888448	50	4.8	50	87	3	335	25	23	30	21	1.99
50892725--50892949	40	5.7	40	82	6	242	25	28	21	25	1.99
50892881--50892958	40	1.9	41	82	10	97	26	28	20	24	1.99
50900660--50900882	39	5.7	40	82	8	242	25	27	21	25	1.99
50900814--50900891	40	1.9	41	82	10	97	26	28	20	24	1.99
50902805--50902953	74	2.0	74	98	0	289	28	14	25	31	1.94
50905196--50905237	20	2.4	17	84	15	50	50	0	26	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50910302--50910544	50	4.8	50	83	4	301	20	29	21	28	1.98
50915171--50915329	71	2.2	75	82	10	188	40	3	15	40	1.62
50915776--50915879	41	2.5	41	85	3	147	27	21	29	21	1.98
50922850--50923005	76	2.1	70	81	11	172	41	3	14	41	1.62
50923453--50923556	41	2.5	41	82	3	129	28	20	28	22	1.98
50928373--50928439	31	2.3	30	90	10	104	31	7	19	41	1.79
50940324--50940361	19	2.0	19	94	0	67	42	13	15	28	1.85
50942900--50942932	17	2.0	17	88	5	50	57	0	0	42	0.98
50943661--50943697	13	2.9	13	88	4	58	29	0	0	70	0.88
50944055--50944087	3	11.0	3	100	0	66	33	0	0	66	0.92
50949980--50950009	16	1.9	16	93	6	53	50	20	0	30	1.49
50951150--50951264	50	2.3	50	80	5	126	33	20	20	26	1.97
50951150--50951264	25	4.6	25	72	7	81	33	20	20	26	1.97
50953087--50953111	11	2.3	11	100	0	50	44	0	24	32	1.54
50956546--50956655	34	3.3	33	82	5	139	39	0	14	45	1.51
50956716--50956984	126	2.1	126	86	2	380	36	15	16	30	1.90
50960047--50960103	25	2.3	23	78	18	62	52	5	0	42	1.24
50960541--50960576	18	2.0	18	94	0	63	38	8	27	25	1.84
50962326--50962390	30	2.2	30	94	0	112	40	3	29	27	1.71
50969649--50969784	50	2.7	51	80	4	168	25	13	27	33	1.94
50979007--50979037	16	1.9	16	93	0	53	16	25	25	32	1.96
50989157--50989200	17	2.5	17	85	7	52	63	4	4	27	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50991769--50991827	28	2.1	28	87	0	82	55	3	23	16	1.56
50991739--50991891	83	1.8	83	83	5	202	41	1	30	26	1.66
50993571--50993621	20	2.5	21	81	6	61	11	27	21	39	1.88
51000845--51000941	30	3.2	30	77	2	115	28	25	15	29	1.96
51002658--51002697	12	3.1	14	86	13	59	75	7	5	12	1.18
51003636--51003706	37	1.9	37	86	11	101	76	2	18	2	1.04
51003646--51003695	6	8.2	6	83	14	50	76	2	20	2	0.99
51003756--51003786	12	2.6	12	100	0	62	45	12	16	25	1.83
51004780--51005107	165	2.0	165	99	0	647	27	13	17	41	1.86
51006132--51006228	30	3.2	30	75	2	106	28	26	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199