genome.fa.s18.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  145  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48182172--48182254	27	3.0	27	87	5	96	30	12	25	32	1.92
48185185--48185222	17	2.2	18	85	4	51	78	0	13	7	0.94
48191234--48191265	10	3.2	10	95	0	55	15	0	21	62	1.32
48197793--48197817	10	2.5	10	100	0	50	16	0	20	64	1.30
48213987--48214065	37	2.1	37	90	0	122	25	31	18	24	1.98
48214184--48214692	47	10.7	47	95	1	858	29	30	8	32	1.87
48214184--48214692	239	2.2	237	93	2	875	29	30	8	32	1.87
48218775--48218809	6	5.8	6	100	0	70	85	0	0	14	0.59
48220190--48220223	16	2.1	17	88	5	52	50	0	0	50	1.00
48224071--48224097	13	2.1	13	100	0	54	7	48	29	14	1.71
48237178--48237219	9	4.8	9	77	16	52	42	2	0	54	1.13
48237691--48237736	10	4.8	10	82	17	62	73	2	10	13	1.17
48237784--48237818	13	2.6	14	90	9	63	80	0	20	0	0.72
48238181--48238239	27	2.3	27	83	11	72	42	1	25	30	1.65
48246562--48246627	34	1.9	34	96	0	123	33	7	22	36	1.83
48250402--48250434	11	2.8	12	90	9	50	66	0	6	27	1.15
48267028--48267136	41	2.7	42	78	16	122	71	2	19	6	1.20
48267053--48267120	20	3.4	20	75	17	61	72	2	19	5	1.19
48267103--48267137	15	2.2	16	95	5	63	74	0	20	5	1.02
48267102--48267136	16	2.3	15	86	13	54	71	0	22	5	1.07
48270317--48270389	28	2.6	28	78	4	76	27	9	10	52	1.68
48273264--48273293	15	1.9	16	93	6	53	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48273541--48273578	16	2.4	17	86	8	53	36	5	0	57	1.21
48273850--48273920	23	3.2	23	78	20	71	61	1	0	36	1.05
48279730--48279788	31	1.9	31	86	6	84	49	13	5	32	1.64
48279964--48280019	29	1.9	29	100	0	112	33	17	16	32	1.92
48283654--48283690	18	2.1	18	89	0	56	37	29	8	24	1.84
48283921--48284155	41	5.8	41	77	6	176	22	18	28	31	1.97
48283967--48284151	82	2.3	79	85	6	246	22	18	25	32	1.97
48284520--48284573	7	7.6	7	77	4	54	22	0	27	50	1.50
48284581--48284644	28	2.3	27	79	15	67	18	1	34	45	1.59
48285806--48285880	22	3.1	24	78	14	75	22	32	2	42	1.68
48288461--48288647	86	2.2	86	89	0	275	31	6	18	42	1.77
48290260--48290484	43	5.3	43	84	2	249	26	18	28	26	1.98
48291193--48291245	25	2.1	25	85	0	70	32	20	20	26	1.98
48292472--48292614	26	5.3	26	77	10	108	22	28	9	39	1.84
48292504--48292570	31	2.2	31	94	0	116	23	23	13	38	1.91
48293051--48293101	25	2.0	25	100	0	102	31	31	11	25	1.92
48309503--48309537	12	3.0	11	88	12	52	51	25	0	22	1.48
48318764--48318977	105	2.0	105	98	0	410	35	4	17	42	1.69
48319358--48319492	50	2.7	47	82	13	121	62	0	2	34	1.10
48319372--48319509	50	3.2	40	75	19	143	65	0	2	31	1.08
48319423--48319452	11	2.8	11	95	5	53	63	0	0	36	0.95
48319437--48319468	16	2.0	16	93	0	55	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48320003--48320047	23	2.0	23	100	0	90	26	4	6	62	1.39
48320600--48320661	29	2.1	29	81	0	70	46	9	14	29	1.76
48322818--48322916	50	2.0	51	91	2	164	40	8	18	33	1.80
48333804--48333876	19	3.7	19	89	7	119	36	12	15	35	1.84
48333804--48333887	19	4.1	22	86	10	78	39	10	15	34	1.82
48334105--48334149	23	2.0	23	81	0	54	26	0	13	60	1.34
48334601--48334643	23	1.9	22	90	4	68	34	9	2	53	1.46
48334818--48334862	3	15.0	3	95	0	81	33	2	0	64	1.06
48335639--48335709	35	2.0	35	100	0	142	30	19	19	29	1.97
48338800--48338837	20	1.9	20	88	0	58	68	10	5	15	1.36
48339848--48340291	44	10.8	44	79	15	495	25	19	26	29	1.99
48339892--48339958	34	2.0	34	94	5	118	23	23	25	26	2.00
48339848--48340002	78	2.0	78	93	0	265	24	20	26	29	1.99
48339848--48340290	122	3.6	122	82	10	534	25	19	26	28	1.99
48339923--48340272	166	2.1	166	92	1	585	25	19	25	29	1.98
48340182--48340246	34	1.9	34	96	0	121	23	24	24	27	2.00
48340141--48340290	78	1.9	78	90	5	241	26	19	26	28	1.99
48340089--48340315	122	1.9	122	85	5	316	25	20	24	29	1.99
48339931--48340316	166	2.3	166	88	2	508	26	19	24	29	1.98
48341089--48341173	19	4.5	19	82	8	84	40	9	15	35	1.79
48341099--48341173	19	3.8	19	87	6	114	40	9	14	36	1.78
48341106--48341162	21	2.8	21	92	5	91	40	7	14	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48341112--48341196	19	4.0	22	76	14	81	38	7	16	37	1.76
48341400--48341445	23	2.0	23	82	0	56	23	0	15	60	1.34
48341723--48341799	37	2.1	38	80	7	86	38	7	1	51	1.39
48342098--48342127	3	10.0	3	100	0	60	33	0	0	66	0.92
48346644--48346678	18	2.0	18	94	5	63	11	28	45	14	1.79
48347609--48347658	18	2.7	18	81	3	55	42	2	18	38	1.61
48349403--48349432	6	4.8	6	95	4	51	80	0	0	20	0.72
48350388--48350466	29	2.7	30	78	9	81	50	3	3	41	1.38
48350388--48350463	30	2.6	30	83	6	84	50	3	3	42	1.39
48368112--48368228	40	2.9	40	86	7	166	33	21	23	22	1.97
48368476--48368609	66	2.0	66	95	0	241	46	5	7	40	1.57
48368749--48368782	15	2.3	15	89	0	50	14	2	38	44	1.61
48373212--48373278	35	1.9	35	81	6	82	38	2	2	55	1.31
48373397--48373702	42	7.3	43	86	1	363	22	16	31	28	1.96
48380069--48380101	7	4.9	7	96	3	59	0	27	0	72	0.85
48389607--48389662	28	2.0	28	83	13	71	51	0	3	44	1.18
48389703--48389738	5	7.2	5	93	0	63	41	2	0	55	1.14
48390713--48390851	41	3.5	41	72	8	126	25	17	23	33	1.96
48392048--48392072	7	3.6	7	100	0	50	60	12	0	28	1.32
48393522--48393821	44	6.9	42	85	4	332	35	19	21	24	1.96
48394265--48394312	12	4.2	12	74	15	57	0	41	20	37	1.53
48394277--48394342	21	3.1	21	84	0	87	3	43	19	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48399840--48399885	7	6.0	7	90	9	56	30	0	17	52	1.45
48399984--48400688	27	25.4	27	83	8	801	33	1	15	49	1.55
48399997--48400709	63	11.0	63	84	8	882	33	1	14	50	1.53
48399854--48400702	36	23.9	36	81	9	777	33	1	15	48	1.56
48401283--48401329	18	2.5	19	83	16	62	51	4	0	44	1.21
48404006--48404488	114	4.2	114	81	3	535	25	23	18	32	1.97
48421184--48421318	40	3.5	39	79	7	132	37	20	19	22	1.95
48421356--48421677	41	7.7	40	79	7	313	23	23	25	27	2.00
48421356--48421677	82	3.9	83	82	2	369	23	23	25	27	2.00
48421356--48421677	123	2.6	123	81	6	353	23	23	25	27	2.00
48421684--48421729	20	2.4	19	85	7	58	26	4	4	65	1.30
48422254--48422305	7	7.4	7	80	0	59	15	0	50	34	1.45
48426883--48426942	18	3.4	18	64	13	52	43	6	10	40	1.64
48427142--48427362	43	5.1	43	91	0	352	19	17	32	30	1.95
48428036--48428100	31	2.1	32	97	2	123	67	10	9	12	1.42
48429921--48429958	20	1.9	20	94	0	67	18	21	13	47	1.82
48434944--48434982	20	2.0	20	90	10	62	15	23	5	56	1.59
48434956--48434995	12	3.3	12	92	0	62	20	22	7	50	1.73
48435268--48435393	50	2.5	50	84	5	164	22	30	21	26	1.99
48437134--48437160	14	1.9	14	100	0	54	29	3	22	44	1.70
48437125--48437165	14	2.7	16	78	21	52	31	4	17	46	1.69
48442391--48442902	162	3.1	162	95	1	898	33	16	16	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48444232--48444276	25	2.0	21	83	16	54	24	0	2	73	0.95
48450395--48450458	21	3.0	21	86	0	92	10	25	17	46	1.80
48454086--48454132	20	2.3	21	81	7	60	44	21	21	12	1.85
48456548--48456662	31	3.8	30	72	9	90	40	11	17	30	1.84
48467442--48467475	13	2.5	13	85	4	50	26	0	2	70	1.01
48468137--48468167	16	2.0	16	93	6	55	70	3	6	19	1.22
48468990--48469031	20	2.1	20	86	0	57	45	9	2	42	1.49
48468673--48469118	152	3.0	147	83	5	522	43	10	4	42	1.57
48472489--48472580	40	2.3	39	83	9	114	32	19	25	22	1.97
48472526--48472602	39	2.0	39	84	5	102	37	23	22	16	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199