genome.fa.s18.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  148  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49005696--49005746	25	2.0	25	100	0	102	27	7	19	45	1.78
49012287--49012652	47	7.7	47	92	1	581	32	9	29	28	1.88
49012774--49012886	37	3.1	37	93	0	181	22	18	32	26	1.97
49014751--49014853	43	2.4	43	100	0	206	22	15	35	26	1.94
49014835--49014908	29	2.6	29	89	4	105	25	16	32	25	1.96
49015221--49015443	40	5.6	40	88	4	272	24	22	27	25	2.00
49018806--49019122	47	6.7	47	93	0	510	32	8	30	28	1.87
49018853--49018931	25	3.3	25	61	10	65	32	5	29	32	1.79
49019244--49019390	36	4.1	36	94	2	242	21	19	31	27	1.97
49020673--49020721	23	2.1	23	100	0	98	28	14	26	30	1.95
49022760--49022866	40	2.7	40	78	8	110	29	22	24	23	1.99
49023264--49023314	25	2.0	26	92	3	86	29	13	25	31	1.94
49023358--49023606	41	6.1	41	85	4	290	20	16	30	32	1.95
49023364--49023622	82	3.2	81	84	3	333	23	17	29	30	1.97
49023358--49023622	123	2.2	122	81	6	322	22	17	28	31	1.97
49023986--49024028	21	2.1	20	91	4	68	20	0	37	41	1.53
49024315--49024348	14	2.4	14	90	9	52	23	0	47	29	1.52
49029957--49030166	43	4.9	43	84	2	242	24	16	25	32	1.96
49031827--49031943	62	1.9	59	83	11	148	40	5	5	49	1.47
49039117--49039162	16	2.8	16	79	20	58	47	2	4	45	1.34
49042475--49042519	22	2.0	22	87	8	65	51	20	2	26	1.59
49048655--49048886	50	4.5	50	80	5	216	28	21	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49059150--49059232	41	2.0	41	100	0	166	42	16	4	36	1.70
49060175--49060232	25	2.3	25	84	0	71	25	24	24	25	2.00
49065408--49065475	29	2.3	29	80	5	84	27	29	13	29	1.94
49065298--49065623	173	1.9	173	92	1	546	30	24	14	30	1.94
49065576--49065654	29	2.7	30	82	13	110	29	30	15	25	1.96
49077224--49077287	30	2.2	29	88	8	94	32	1	0	65	1.02
49077892--49077926	15	2.3	15	100	0	70	37	8	0	54	1.31
49086811--49087351	47	11.5	47	94	0	920	32	8	29	29	1.87
49087470--49087548	37	2.1	37	88	4	115	25	18	30	25	1.98
49094489--49094544	27	2.1	27	89	0	85	42	14	10	32	1.80
49095756--49095832	38	2.0	38	94	0	136	28	0	40	31	1.57
49099620--49099710	48	1.9	47	88	2	137	40	25	14	19	1.89
49107512--49107583	37	1.9	37	97	0	135	23	11	16	48	1.78
49107522--49107580	18	3.2	18	65	21	50	20	11	16	50	1.76
49111771--49111880	30	3.7	29	78	3	96	36	23	18	21	1.95
49114400--49114431	16	1.9	17	93	6	57	53	0	6	40	1.26
49117354--49117410	27	2.1	27	100	0	114	36	28	7	28	1.83
49119693--49119774	42	2.0	42	85	4	112	31	24	13	30	1.93
49119734--49119826	47	2.0	48	86	2	134	34	27	13	23	1.93
49122416--49122496	26	3.2	26	61	22	62	34	29	12	23	1.91
49122420--49122606	51	3.7	50	81	4	232	31	28	15	24	1.95
49122418--49122602	101	1.8	101	91	3	309	31	28	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49125982--49126027	21	2.2	21	96	0	83	23	13	17	45	1.83
49128187--49128229	22	2.0	22	86	9	61	23	6	25	44	1.78
49130575--49130646	26	2.8	26	85	2	101	15	26	23	34	1.94
49131271--49131303	14	2.4	14	94	0	57	18	9	0	72	1.10
49138978--49139029	27	1.9	27	92	0	86	5	26	7	59	1.48
49141021--49141065	19	2.4	19	85	7	56	42	2	0	55	1.12
49141295--49141353	13	4.5	13	89	0	82	37	28	8	25	1.85
49143787--49143823	12	3.1	12	88	0	56	21	35	27	16	1.94
49152147--49152190	22	1.9	24	86	9	65	40	9	0	50	1.34
49154243--49154295	20	2.7	20	84	0	79	33	7	9	49	1.64
49155329--49155382	3	18.0	3	100	0	108	33	33	0	33	1.58
49159310--49159353	22	1.9	24	86	9	65	40	9	2	47	1.48
49162357--49162535	77	2.3	75	86	6	236	49	7	8	34	1.62
49166031--49166224	51	3.8	50	76	6	203	30	27	16	24	1.96
49166038--49166222	101	1.8	101	89	3	291	31	27	16	24	1.96
49167586--49168140	136	4.1	135	87	3	806	40	7	6	45	1.59
49167586--49168140	273	2.0	274	91	1	898	40	7	6	45	1.59
49169974--49170055	28	3.0	27	79	12	78	47	9	13	29	1.75
49174811--49174892	28	3.0	27	77	12	69	47	9	12	30	1.73
49179187--49179277	28	3.2	28	86	7	130	27	24	25	23	2.00
49179194--49179277	30	2.9	30	91	3	136	26	23	26	23	2.00
49179388--49179464	26	3.0	26	84	0	100	37	24	22	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49179638--49179861	54	4.1	54	84	2	263	18	18	18	44	1.87
49179639--49179861	27	8.3	26	79	6	203	17	18	18	44	1.87
49180543--49180602	20	3.3	19	75	11	63	56	0	38	5	1.21
49186372--49186614	50	4.8	50	87	2	326	19	30	23	26	1.98
49189182--49189234	27	1.9	28	84	3	72	47	1	7	43	1.42
49193153--49193230	25	3.1	25	71	10	70	28	24	17	29	1.98
49195237--49195296	24	2.5	24	91	2	95	33	28	13	25	1.93
49195334--49195389	24	2.3	24	90	0	85	33	25	14	26	1.94
49195238--49195454	92	2.3	93	93	0	373	33	24	11	29	1.91
49196625--49196735	30	3.7	29	79	5	132	35	13	25	26	1.93
49196574--49196763	60	3.2	58	75	8	168	35	12	26	26	1.91
49196714--49196793	30	2.7	30	82	0	97	40	11	26	22	1.87
49196574--49196790	119	1.8	118	79	6	251	35	12	26	25	1.91
49204976--49205037	31	2.1	30	82	17	76	30	16	8	45	1.76
49205196--49205266	25	2.8	25	74	19	67	28	22	25	23	2.00
49211128--49211173	23	2.0	23	100	0	92	34	21	4	39	1.73
49215460--49215507	21	2.4	19	72	24	53	35	4	6	54	1.45
49219969--49220232	130	2.0	130	94	0	465	45	10	16	27	1.79
49227001--49227084	43	2.0	43	92	0	141	26	27	17	28	1.98
49228017--49228041	13	1.9	13	100	0	50	32	20	16	32	1.94
49229716--49230124	47	8.6	47	89	2	566	32	9	29	27	1.89
49229716--49230124	190	2.1	190	89	0	620	32	9	29	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49229716--49230124	143	2.9	143	90	1	624	32	9	29	27	1.89
49230243--49230321	37	2.1	37	83	4	97	25	16	30	27	1.97
49231699--49231860	43	3.8	44	79	8	147	29	27	13	29	1.94
49232115--49232205	43	2.1	43	87	2	130	43	8	10	36	1.71
49235724--49235869	40	3.7	40	84	7	181	23	22	27	26	2.00
49235724--49235902	80	2.2	80	81	6	195	25	21	26	25	2.00
49243640--49243826	40	4.7	40	83	9	211	25	20	26	27	1.99
49243640--49243820	81	2.2	81	81	10	210	25	21	27	25	1.99
49247388--49247438	21	2.4	22	86	6	77	31	39	0	29	1.57
49249204--49249287	41	2.0	40	82	13	100	30	26	17	25	1.97
49249222--49249375	82	1.9	82	85	5	213	32	28	18	20	1.96
49249220--49249398	41	4.4	40	82	6	191	34	28	17	19	1.94
49257621--49257650	15	2.0	15	100	0	60	40	0	13	46	1.43
49260896--49260988	18	5.2	18	86	0	114	27	21	16	34	1.95
49260896--49260988	36	2.6	36	87	0	141	27	21	16	34	1.95
49267621--49267668	22	2.3	22	85	7	64	60	8	4	27	1.44
49277783--49277837	26	2.1	26	93	0	92	36	23	20	20	1.95
49278009--49278227	81	2.7	81	87	2	316	19	17	19	44	1.87
49277976--49278227	27	9.4	27	84	6	273	19	17	19	44	1.88
49283015--49283070	21	3.0	17	74	20	58	42	21	0	35	1.53
49294609--49294638	7	4.3	7	100	0	60	40	0	16	43	1.48
49295292--49295331	18	2.2	18	90	0	62	25	30	5	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49299001--49299420	125	3.4	125	85	4	605	29	21	19	29	1.97
49300440--49300502	29	2.2	29	82	0	72	46	0	7	46	1.32
49303911--49304033	28	4.4	28	90	2	176	33	28	12	26	1.92
49312116--49312238	28	4.4	28	92	2	185	33	27	12	26	1.92
49315862--49315899	18	2.1	18	100	0	76	15	21	31	31	1.94
49317356--49317441	29	2.9	28	70	17	66	43	13	8	34	1.74
49321499--49321532	16	2.1	17	94	5	61	41	11	0	47	1.40
49325378--49325761	27	14.2	27	79	6	359	39	17	16	27	1.91
49325955--49326057	26	4.0	26	79	5	127	15	22	22	39	1.91
49326163--49326241	30	2.6	30	79	0	95	24	26	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199