genome.fa.s18.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  178  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56914647--56914702	21	2.6	21	78	13	60	39	1	0	58	1.08
56915076--56915101	7	3.7	7	100	0	52	0	11	0	88	0.52
56922434--56922527	40	2.3	40	87	3	136	24	15	22	37	1.93
56923676--56923712	19	2.0	18	89	5	56	62	2	2	32	1.23
56924063--56924096	9	3.8	9	92	0	50	58	2	5	32	1.37
56924798--56924834	20	1.9	18	89	10	56	67	8	18	5	1.36
56925417--56925470	7	7.6	7	77	4	54	22	0	29	48	1.51
56925417--56925459	22	2.0	22	90	0	68	20	0	32	46	1.51
56925531--56925563	16	2.1	16	88	11	50	42	0	0	57	0.98
56926443--56926489	21	2.1	23	88	7	71	29	2	0	68	1.02
56926449--56926504	21	2.6	21	78	13	60	39	1	0	58	1.08
56926878--56926904	7	3.9	7	100	0	54	0	11	0	88	0.50
56932920--56933013	40	2.3	40	87	3	136	24	15	22	37	1.93
56934162--56934198	19	2.0	18	89	5	56	62	2	2	32	1.23
56934549--56934582	9	3.8	9	92	0	50	58	2	5	32	1.37
56935278--56935314	20	1.9	18	89	10	56	67	8	18	5	1.36
56935896--56935949	7	7.6	7	77	4	54	22	0	29	48	1.51
56935896--56935938	22	2.0	22	90	0	68	20	0	32	46	1.51
56936010--56936042	16	2.1	16	88	11	50	42	0	0	57	0.98
56936923--56936969	21	2.1	23	88	7	71	29	2	0	68	1.02
56936929--56936984	21	2.6	21	78	13	60	39	1	0	58	1.08
56945156--56945204	17	2.8	17	81	3	62	61	0	4	34	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56952159--56952280	43	2.8	43	81	2	136	31	27	18	22	1.97
56957529--56957600	7	10.3	7	77	5	56	37	38	0	23	1.55
56957549--56957600	14	3.7	14	86	0	68	32	40	0	26	1.57
56957581--56957664	14	5.9	14	73	5	62	42	28	3	25	1.71
56957604--56957679	21	3.6	21	70	10	64	47	23	3	25	1.69
56957640--56957679	14	2.8	14	84	3	53	52	20	2	25	1.59
56957699--56957741	14	3.1	14	75	0	50	46	34	0	18	1.50
56958006--56958257	113	2.2	112	89	2	380	30	25	18	25	1.98
56959516--56959567	17	3.1	17	77	5	52	25	5	3	65	1.32
56959522--56959563	16	2.6	16	78	14	50	26	4	4	64	1.33
56963657--56963723	30	2.2	30	94	2	116	20	7	10	61	1.53
56965966--56966008	18	2.6	16	80	20	52	62	0	0	37	0.95
56965972--56966003	9	3.4	10	87	12	50	56	0	0	43	0.99
56968045--56968087	19	2.2	20	95	4	79	32	23	25	18	1.97
56968949--56968981	11	2.8	12	90	4	50	60	3	12	24	1.46
56975342--56975371	15	2.1	14	93	6	51	50	0	0	50	1.00
56980810--56980852	22	2.0	22	100	0	86	32	4	13	48	1.63
56990709--56990746	18	2.1	19	90	5	60	52	5	21	21	1.66
56992401--56992516	61	1.9	60	94	1	205	25	9	23	41	1.84
56997678--56997712	3	11.7	3	87	0	52	60	0	2	37	1.12
56997677--56997712	15	2.4	15	95	0	63	58	0	2	38	1.13
57002694--57002723	15	2.1	14	93	6	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57004944--57005026	38	2.2	38	84	0	112	25	13	19	42	1.87
57005529--57005608	38	2.1	39	83	9	101	45	1	2	51	1.22
57010356--57010381	3	8.7	3	100	0	52	30	0	34	34	1.58
57010569--57010595	7	3.9	7	100	0	54	55	14	14	14	1.70
57015655--57015710	25	2.2	25	84	6	69	35	10	5	48	1.61
57020438--57020471	9	3.8	9	96	0	59	44	17	11	26	1.83
57020620--57020679	30	2.0	31	86	3	86	20	40	1	38	1.62
57023923--57023952	3	10.0	3	100	0	60	33	0	0	66	0.92
57028709--57028746	18	2.1	19	90	5	60	21	21	5	52	1.66
57033611--57033640	15	2.1	14	93	6	51	50	0	3	46	1.18
57040894--57040935	21	2.0	21	90	4	68	52	4	0	42	1.22
57045493--57045527	15	2.4	15	90	4	54	48	0	8	42	1.33
57046292--57046339	21	2.3	20	80	16	53	25	6	2	66	1.26
57051426--57051487	22	2.9	22	73	19	60	17	6	0	75	1.00
57052360--57052393	14	2.5	13	90	9	59	91	8	0	0	0.43
57056033--57056064	11	2.8	12	86	13	50	34	0	0	65	0.93
57056033--57056065	10	3.0	11	91	8	50	36	0	0	63	0.95
57056187--57056249	30	2.1	30	94	5	110	57	11	3	28	1.49
57056916--57056959	19	2.3	19	88	0	61	56	27	2	13	1.49
57058065--57058126	31	2.0	31	100	0	124	32	9	29	29	1.89
57067160--57067209	20	2.4	20	83	6	55	30	12	18	40	1.86
57067230--57067265	17	2.1	17	94	0	63	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57067230--57067277	17	2.7	17	84	9	51	45	2	0	52	1.12
57071253--57071307	18	3.1	18	100	0	110	27	29	16	27	1.97
57078887--57078939	22	2.4	22	87	0	70	45	26	18	9	1.80
57079853--57079917	32	2.0	32	100	0	130	36	29	3	30	1.73
57093574--57093746	86	2.0	86	97	0	328	42	10	8	38	1.71
57093582--57093721	43	3.3	43	67	7	131	40	10	10	39	1.74
57095118--57095201	42	2.0	42	95	0	150	16	21	23	38	1.93
57105859--57105910	5	10.0	5	79	8	50	44	0	21	34	1.52
57105862--57105910	22	2.3	20	79	6	53	44	0	22	32	1.53
57114184--57114226	9	4.8	9	85	0	59	32	30	6	30	1.84
57115015--57115044	14	2.1	14	93	0	51	43	10	6	40	1.64
57115132--57115187	7	7.7	7	76	21	53	30	0	1	67	1.01
57115132--57115186	15	3.8	14	77	17	58	29	0	1	69	0.99
57121146--57121188	21	2.0	21	95	0	77	41	11	27	18	1.85
57122274--57122357	42	2.0	42	97	0	159	30	10	15	42	1.81
57123081--57123148	33	2.1	33	83	10	86	51	2	0	45	1.16
57126892--57126969	34	2.2	34	95	4	138	21	20	28	29	1.98
57128812--57128843	16	2.0	16	93	0	55	34	25	6	34	1.81
57129176--57129207	16	2.0	16	100	0	64	37	31	0	31	1.58
57132835--57132913	39	2.0	39	100	0	158	26	25	10	37	1.87
57138059--57138124	18	3.4	18	71	15	60	31	4	0	63	1.14
57138062--57138243	40	4.4	41	89	4	269	35	3	0	60	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57138062--57138243	82	2.2	81	89	3	267	35	3	0	60	1.15
57138152--57138177	11	2.4	11	100	0	52	38	7	0	53	1.30
57142822--57142855	16	2.1	16	88	0	50	50	14	17	17	1.79
57145646--57145686	21	2.0	21	90	0	64	29	21	29	19	1.98
57147589--57147622	16	2.1	16	88	0	50	50	14	17	17	1.79
57150656--57150680	13	1.9	13	100	0	50	32	0	12	56	1.36
57156404--57156445	9	4.7	9	87	0	66	33	33	2	30	1.71
57157177--57157296	59	2.0	59	98	0	231	26	15	12	45	1.82
57173916--57173955	17	2.3	18	86	4	55	47	7	2	42	1.45
57176313--57176342	14	2.1	14	100	0	60	46	6	6	40	1.56
57176428--57176483	7	7.7	7	76	21	53	30	0	1	67	1.01
57176428--57176482	15	3.8	14	77	17	58	29	0	1	69	0.99
57178359--57178392	17	2.0	17	94	0	59	44	50	0	5	1.26
57182996--57183029	17	2.0	17	94	0	59	44	50	0	5	1.26
57185633--57185661	15	2.0	15	93	6	51	48	0	0	51	1.00
57191782--57191919	50	2.8	50	78	6	136	23	28	22	26	1.99
57191733--57191913	100	1.8	100	81	4	231	24	27	20	27	1.99
57192747--57192774	12	2.3	12	100	0	56	21	7	14	57	1.61
57193211--57193256	18	2.6	18	86	10	67	19	13	17	50	1.78
57197315--57197804	251	2.0	250	98	0	953	45	18	7	28	1.76
57198075--57198198	43	2.9	43	83	9	155	33	28	16	21	1.96
57204093--57204152	30	2.0	31	83	9	79	41	0	38	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57204360--57204396	9	4.1	9	85	0	56	32	8	13	45	1.73
57209401--57209442	21	2.0	21	100	0	84	66	4	4	23	1.30
57222831--57222874	22	2.0	22	95	0	79	22	15	36	25	1.94
57226053--57226105	22	2.4	21	84	6	70	22	0	30	47	1.52
57226147--57226184	13	2.9	13	92	0	58	18	0	31	50	1.47
57226201--57226233	16	2.1	16	88	11	50	42	0	0	57	0.98
57235042--57235132	43	2.1	43	87	2	130	34	10	10	43	1.75
57235533--57235640	42	2.5	43	88	4	157	21	19	25	34	1.96
57236308--57236345	18	2.1	18	100	0	76	31	23	10	34	1.89
57238062--57238095	17	1.9	17	88	5	50	61	2	8	26	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199